chore(transform-io): add generated python

Author: thewtex

packages/transform-io/.gitignore

@@ -1,6 +1,5 @@
 test/
 emscripten-build/
-python/
 wasi-build/
 typescript/dist
 typescript/src/version.ts

packages/transform-io/python/itkwasm-transform-io-emscripten/README.md

@@ -0,0 +1,23 @@
+# itkwasm-transform-io-emscripten
+
+[![PyPI version](https://badge.fury.io/py/itkwasm-transform-io-emscripten.svg)](https://badge.fury.io/py/itkwasm-transform-io-emscripten)
+
+Input and output for scientific and medical coordinate transform file formats. Emscripten implementation.
+
+This package provides the Emscripten WebAssembly implementation. It is usually not called directly. Please use the [`itkwasm-transform-io`](https://pypi.org/project/itkwasm-transform-io/) instead.
+
+
+## Installation
+
+```sh
+import micropip
+await micropip.install('itkwasm-transform-io-emscripten')
+```
+
+## Development
+
+```sh
+pip install hatch
+hatch run download-pyodide
+hatch run test
+```

packages/transform-io/python/itkwasm-transform-io-emscripten/itkwasm_transform_io_emscripten/__init__.py

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+# Generated file. To retain edits, remove this comment.
+
+"""itkwasm-transform-io-emscripten: Input and output for scientific and medical coordinate transform file formats. Emscripten implementation."""
+
+from .hdf5_read_transform_async import hdf5_read_transform_async
+from .hdf5_write_transform_async import hdf5_write_transform_async
+from .mat_read_transform_async import mat_read_transform_async
+from .mat_write_transform_async import mat_write_transform_async
+from .mnc_read_transform_async import mnc_read_transform_async
+from .mnc_write_transform_async import mnc_write_transform_async
+from .txt_read_transform_async import txt_read_transform_async
+from .txt_write_transform_async import txt_write_transform_async
+from .wasm_read_transform_async import wasm_read_transform_async
+from .wasm_write_transform_async import wasm_write_transform_async
+from .wasm_zstd_read_transform_async import wasm_zstd_read_transform_async
+from .wasm_zstd_write_transform_async import wasm_zstd_write_transform_async
+
+from ._version import __version__

packages/transform-io/python/itkwasm-transform-io-emscripten/itkwasm_transform_io_emscripten/_version.py

@@ -0,0 +1 @@
+__version__ = "0.1.0"

packages/transform-io/python/itkwasm-transform-io-emscripten/itkwasm_transform_io_emscripten/hdf5_read_transform_async.py

@@ -0,0 +1,60 @@
+# Generated file. To retain edits, remove this comment.
+
+from pathlib import Path
+import os
+from typing import Dict, Tuple, Optional, List, Any
+
+from .js_package import js_package
+
+from itkwasm.pyodide import (
+    to_js,
+    to_py,
+    js_resources
+)
+from itkwasm import (
+    InterfaceTypes,
+    BinaryFile,
+    Transform,
+)
+
+async def hdf5_read_transform_async(
+    serialized_transform: os.PathLike,
+    float_parameters: bool = False,
+) -> Tuple[Any, Transform]:
+    """Read an transform file format and convert it to the ITK-Wasm transform file format
+
+    :param serialized_transform: Input transform serialized in the file format
+    :type  serialized_transform: os.PathLike
+
+    :param float_parameters: Use float for the parameter value type. The default is double.
+    :type  float_parameters: bool
+
+    :return: Whether the input could be read. If false, the output transform is not valid.
+    :rtype:  Any
+
+    :return: Output transform
+    :rtype:  Transform
+    """
+    js_module = await js_package.js_module
+    web_worker = js_resources.web_worker
+
+    kwargs = {}
+    if float_parameters:
+        kwargs["floatParameters"] = to_js(float_parameters)
+
+    outputs = await js_module.hdf5ReadTransform(to_js(BinaryFile(serialized_transform)), webWorker=web_worker, noCopy=True, **kwargs)
+
+    output_web_worker = None
+    output_list = []
+    outputs_object_map = outputs.as_object_map()
+    for output_name in outputs.object_keys():
+        if output_name == 'webWorker':
+            output_web_worker = outputs_object_map[output_name]
+        else:
+            output_list.append(to_py(outputs_object_map[output_name]))
+
+    js_resources.web_worker = output_web_worker
+
+    if len(output_list) == 1:
+        return output_list[0]
+    return tuple(output_list)

packages/transform-io/python/itkwasm-transform-io-emscripten/itkwasm_transform_io_emscripten/hdf5_write_transform_async.py

@@ -0,0 +1,67 @@
+# Generated file. To retain edits, remove this comment.
+
+from pathlib import Path
+import os
+from typing import Dict, Tuple, Optional, List, Any
+
+from .js_package import js_package
+
+from itkwasm.pyodide import (
+    to_js,
+    to_py,
+    js_resources
+)
+from itkwasm import (
+    InterfaceTypes,
+    Transform,
+    BinaryFile,
+)
+
+async def hdf5_write_transform_async(
+    transform: Transform,
+    serialized_transform: str,
+    float_parameters: bool = False,
+    use_compression: bool = False,
+) -> Tuple[Any]:
+    """Write an ITK-Wasm transform file format converted to a transform file format
+
+    :param transform: Input transform
+    :type  transform: Transform
+
+    :param serialized_transform: Output transform serialized in the file format.
+    :type  serialized_transform: str
+
+    :param float_parameters: Use float for the parameter value type. The default is double.
+    :type  float_parameters: bool
+
+    :param use_compression: Use compression in the written file
+    :type  use_compression: bool
+
+    :return: Whether the input could be written. If false, the output transform is not valid.
+    :rtype:  Any
+    """
+    js_module = await js_package.js_module
+    web_worker = js_resources.web_worker
+
+    kwargs = {}
+    if float_parameters:
+        kwargs["floatParameters"] = to_js(float_parameters)
+    if use_compression:
+        kwargs["useCompression"] = to_js(use_compression)
+
+    outputs = await js_module.hdf5WriteTransform(to_js(transform), to_js(serialized_transform), webWorker=web_worker, noCopy=True, **kwargs)
+
+    output_web_worker = None
+    output_list = []
+    outputs_object_map = outputs.as_object_map()
+    for output_name in outputs.object_keys():
+        if output_name == 'webWorker':
+            output_web_worker = outputs_object_map[output_name]
+        else:
+            output_list.append(to_py(outputs_object_map[output_name]))
+
+    js_resources.web_worker = output_web_worker
+
+    if len(output_list) == 1:
+        return output_list[0]
+    return tuple(output_list)

packages/transform-io/python/itkwasm-transform-io-emscripten/itkwasm_transform_io_emscripten/js_package.py

@@ -0,0 +1,60 @@
+# Generated file. To retain edits, remove this comment.
+
+from pathlib import Path
+import os
+from typing import Dict, Tuple, Optional, List, Any
+
+from .js_package import js_package
+
+from itkwasm.pyodide import (
+    to_js,
+    to_py,
+    js_resources
+)
+from itkwasm import (
+    InterfaceTypes,
+    BinaryFile,
+    Transform,
+)
+
+async def mat_read_transform_async(
+    serialized_transform: os.PathLike,
+    float_parameters: bool = False,
+) -> Tuple[Any, Transform]:
+    """Read an transform file format and convert it to the ITK-Wasm transform file format
+
+    :param serialized_transform: Input transform serialized in the file format
+    :type  serialized_transform: os.PathLike
+
+    :param float_parameters: Use float for the parameter value type. The default is double.
+    :type  float_parameters: bool
+
+    :return: Whether the input could be read. If false, the output transform is not valid.
+    :rtype:  Any
+
+    :return: Output transform
+    :rtype:  Transform
+    """
+    js_module = await js_package.js_module
+    web_worker = js_resources.web_worker
+
+    kwargs = {}
+    if float_parameters:
+        kwargs["floatParameters"] = to_js(float_parameters)
+
+    outputs = await js_module.matReadTransform(to_js(BinaryFile(serialized_transform)), webWorker=web_worker, noCopy=True, **kwargs)
+
+    output_web_worker = None
+    output_list = []
+    outputs_object_map = outputs.as_object_map()
+    for output_name in outputs.object_keys():
+        if output_name == 'webWorker':
+            output_web_worker = outputs_object_map[output_name]
+        else:
+            output_list.append(to_py(outputs_object_map[output_name]))
+
+    js_resources.web_worker = output_web_worker
+
+    if len(output_list) == 1:
+        return output_list[0]
+    return tuple(output_list)

packages/transform-io/python/itkwasm-transform-io-emscripten/itkwasm_transform_io_emscripten/mat_read_transform_async.py

@@ -0,0 +1,67 @@
+# Generated file. To retain edits, remove this comment.
+
+from pathlib import Path
+import os
+from typing import Dict, Tuple, Optional, List, Any
+
+from .js_package import js_package
+
+from itkwasm.pyodide import (
+    to_js,
+    to_py,
+    js_resources
+)
+from itkwasm import (
+    InterfaceTypes,
+    Transform,
+    BinaryFile,
+)
+
+async def mat_write_transform_async(
+    transform: Transform,
+    serialized_transform: str,
+    float_parameters: bool = False,
+    use_compression: bool = False,
+) -> Tuple[Any]:
+    """Write an ITK-Wasm transform file format converted to a transform file format
+
+    :param transform: Input transform
+    :type  transform: Transform
+
+    :param serialized_transform: Output transform serialized in the file format.
+    :type  serialized_transform: str
+
+    :param float_parameters: Use float for the parameter value type. The default is double.
+    :type  float_parameters: bool
+
+    :param use_compression: Use compression in the written file
+    :type  use_compression: bool
+
+    :return: Whether the input could be written. If false, the output transform is not valid.
+    :rtype:  Any
+    """
+    js_module = await js_package.js_module
+    web_worker = js_resources.web_worker
+
+    kwargs = {}
+    if float_parameters:
+        kwargs["floatParameters"] = to_js(float_parameters)
+    if use_compression:
+        kwargs["useCompression"] = to_js(use_compression)
+
+    outputs = await js_module.matWriteTransform(to_js(transform), to_js(serialized_transform), webWorker=web_worker, noCopy=True, **kwargs)
+
+    output_web_worker = None
+    output_list = []
+    outputs_object_map = outputs.as_object_map()
+    for output_name in outputs.object_keys():
+        if output_name == 'webWorker':
+            output_web_worker = outputs_object_map[output_name]
+        else:
+            output_list.append(to_py(outputs_object_map[output_name]))
+
+    js_resources.web_worker = output_web_worker
+
+    if len(output_list) == 1:
+        return output_list[0]
+    return tuple(output_list)

packages/transform-io/python/itkwasm-transform-io-emscripten/itkwasm_transform_io_emscripten/mat_write_transform_async.py

@@ -0,0 +1,60 @@
+# Generated file. To retain edits, remove this comment.
+
+from pathlib import Path
+import os
+from typing import Dict, Tuple, Optional, List, Any
+
+from .js_package import js_package
+
+from itkwasm.pyodide import (
+    to_js,
+    to_py,
+    js_resources
+)
+from itkwasm import (
+    InterfaceTypes,
+    BinaryFile,
+    Transform,
+)
+
+async def mnc_read_transform_async(
+    serialized_transform: os.PathLike,
+    float_parameters: bool = False,
+) -> Tuple[Any, Transform]:
+    """Read an transform file format and convert it to the ITK-Wasm transform file format
+
+    :param serialized_transform: Input transform serialized in the file format
+    :type  serialized_transform: os.PathLike
+
+    :param float_parameters: Use float for the parameter value type. The default is double.
+    :type  float_parameters: bool
+
+    :return: Whether the input could be read. If false, the output transform is not valid.
+    :rtype:  Any
+
+    :return: Output transform
+    :rtype:  Transform
+    """
+    js_module = await js_package.js_module
+    web_worker = js_resources.web_worker
+
+    kwargs = {}
+    if float_parameters:
+        kwargs["floatParameters"] = to_js(float_parameters)
+
+    outputs = await js_module.mncReadTransform(to_js(BinaryFile(serialized_transform)), webWorker=web_worker, noCopy=True, **kwargs)
+
+    output_web_worker = None
+    output_list = []
+    outputs_object_map = outputs.as_object_map()
+    for output_name in outputs.object_keys():
+        if output_name == 'webWorker':
+            output_web_worker = outputs_object_map[output_name]
+        else:
+            output_list.append(to_py(outputs_object_map[output_name]))
+
+    js_resources.web_worker = output_web_worker
+
+    if len(output_list) == 1:
+        return output_list[0]
+    return tuple(output_list)