Port over to AutoML common (#1318)

* Add submodule

* Port to abstract_ensemble, backend from automl_common

* Updated workflow files

* Update imports

* Trigger actions

* Another import fix

* update import

* m

* Backend fixes

* Backend parameter update

* fixture fix for backend

* Fix tests

* readd old abstract ensemble for now

* flake8'd

* Added install from source to readme

* Moved installation w.r.t submodules to the docs

* Temporarily remove submodule

* Readded submodule

* Updated to use automl_common under autosklearn

* Updated MANIFEST

* Removed uneeded statements from MANIFEST

* Fixed import

* Fixed comment line in MANIFEST.in

* Added automl_common/setup.py to MANIFEST

* Added prefix to script

* Re-added removed title #

* Added note for submodule for CONTRIBUTING

* Made the submodule step a bit more clear for contributing.md

* CONTRIBUTING fixes

Author: eddiebergman

.github/workflows/dist.yml

@@ -39,8 +39,8 @@ jobs:
       run: |
         pip install twine
         last_dist=$(ls -t dist/auto-sklearn-*.tar.gz | head -n 1)
-        twine check "$last_dist" --strict
-
+        twine_output=`twine check "$last_dist"`
+        if [[ "$twine_output" != "Checking $last_dist: PASSED" ]]; then echo $twine_output && exit 1;fi
 
     - name: Install dist
       run: |

.github/workflows/docs.yml

@@ -21,9 +21,7 @@ jobs:
   build-and-deploy:
     runs-on: ubuntu-latest
     steps:
-
-    - name: Checkout
-      uses: actions/checkout@v2
+    - uses: actions/checkout@v2
       with:
         submodules: recursive
 

.github/workflows/pytest.yml

@@ -80,8 +80,7 @@ jobs:
 
     steps:
 
-    - name: Checkout
-      uses: actions/checkout@v2
+    - uses: actions/checkout@v2
       with:
         submodules: recursive
 

CONTRIBUTING.md

@@ -46,7 +46,7 @@ Following that we'll tell you about how you can test your changes locally and th
     # If you missed the --recurse-submodules arg during clone or need to install the
     # submodule manually, then execute the following line:
     #
-    # git submodule update --init --recursive
+    # git submodule udate --init --recursive
 
     # ... Alternatively, if you would prefer a more manual method
     # Show all the available branches with a * beside your current one

MANIFEST.in

@@ -2,7 +2,6 @@ include LICENSE.txt
 include requirements.txt
 include autosklearn/util/logging.yaml
 include autosklearn/requirements.txt
-include autosklearn/py.typed
 
 # Meta-data
 recursive-include autosklearn/metalearning/files *.arff *.csv *.txt

doc/installation.rst

@@ -125,6 +125,28 @@ missed the `--recurse-submodules` option.
     pip install -e ".[test,doc,examples]"
 
 
+You can install auto-sklearn directly form source by following the below:
+
+.. code:: bash
+
+    git clone --recurse-submodules [email protected]:automl/auto-sklearn.git
+    cd auto-sklearn
+
+    # Install it in editable mode with all optional dependencies
+    pip install -e ".[test,doc,examples]"
+
+We use submodules so you will have to make sure the submodule is initialized if you
+missed the `--recurse-submodules` option.
+
+.. code:: bash
+
+    git clone [email protected]:automl/auto-sklearn.git
+    cd auto-sklearn
+    git submodule update --init --recursive
+
+    pip install -e ".[test,doc,examples]"
+
+
 Windows/macOS compatibility
 ===========================