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ungwudik

DDO-4137 update to read artifacts from GAR (#9198)

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Jun 30, 2025

180a5bc · Jun 30, 2025

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Name		Name	Last commit message	Last commit date
parent directory ..
cnv_cromwell_tests		cnv_cromwell_tests	Updated Python and PyMC, removed TensorFlow, and added PyTorch in con…	Jul 9, 2024
cnv_wdl		cnv_wdl	Updated references to the funcotator datasets bucket to point to the …	Mar 31, 2025
docker		docker	DDO-4137 update to read artifacts from GAR (#9198)	Jun 30, 2025
funcotator		funcotator	Funcotator Update for Datasource Release V1.8 (#8512)	Oct 11, 2023
funcotator_wdl		funcotator_wdl	Updated references to the funcotator datasets bucket to point to the …	Mar 31, 2025
github_actions		github_actions	Replace Travis with GithubActions (#7754)	Apr 21, 2022
m2_cromwell_tests		m2_cromwell_tests	Refactored JointVcfFiltering WDL and expanded tests. (#8074)	Dec 14, 2022
mitochondria_m2_wdl		mitochondria_m2_wdl	Made runtime attrs to args in MT pipeline (#8417)	Jul 14, 2023
mutect2_wdl		mutect2_wdl	Small changes to M2 WDL for Permutect (#9138)	Apr 4, 2025
pathseq/wdl		pathseq/wdl	PathSeq WDL overhaul (#6536)	Jun 1, 2020
spark_eval		spark_eval	Spark script improvements (#5815)	Mar 25, 2019
spark_wdl		spark_wdl	WDL to run ReadsPipelineSpark on a multicore machine (#6213)	Oct 28, 2019
sv		sv	update SV Spark pipeline example shell scripts saving results to GCS (#…	Aug 28, 2019
unsupported		unsupported	More tooling of combine_tracks.wdl (#5384)	Nov 1, 2018
vcf_site_level_filtering_cromwell_tests		vcf_site_level_filtering_cromwell_tests	Performed a round of ablation on new annotation-based filtering tools. (	Sep 22, 2023
vcf_site_level_filtering_wdl		vcf_site_level_filtering_wdl	Performed a round of ablation on new annotation-based filtering tools. (	Sep 22, 2023
anonymizeSampleNames.py		anonymizeSampleNames.py	Changes to public to support genotype gvcfs	Jun 20, 2016
binary_search.sh		binary_search.sh	finally remove dataflow from gatk (#3990)	Jan 5, 2018
dataproc-cluster-ui		dataproc-cluster-ui	adding a script to easily open the dataproc cluster ui(#5188)	Sep 20, 2018
gatkcondaenv.yml.template		gatkcondaenv.yml.template	Port of nvscorevariants into GATK, with a basic tool frontend (#8004)	Oct 17, 2024
get_gatk_stats_app_script.gs		get_gatk_stats_app_script.gs	Fixed bug in download metrics script. (#8418)	Jul 14, 2023
prepareJitpackEnvironment.sh		prepareJitpackEnvironment.sh	Add jitpack support for SNAPSHOTS (#5056)	Aug 16, 2018
publish_gatk_tool_wdls.sh		publish_gatk_tool_wdls.sh	Added a script to publish GATK tool WDLs for each release (#6980)	Nov 25, 2020
publish_jbwa.gradle		publish_jbwa.gradle	Add dependency on jbwa snapshot, script to release future jbwa snapsh…	May 21, 2016
test_from_jar.txt		test_from_jar.txt	ApplyBQSR works on cloud	Jun 25, 2015
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