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8 files changed +24
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lines changed Original file line number Diff line number Diff line change 78
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doc : Test command execution in Docker with stdout redirection
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- job : v1.0/empty.json
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- tool : v1.0/egrep- stderr.cwl
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+ tool : v1.0/stderr.cwl
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doc : Test command line with stderr redirection
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output :
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output_file :
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class : File
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- checksum : sha1$cec7b8746a78c42060c96505887449bca0142976
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- size : 84
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+ checksum : sha1$f1d2d2f924e986ac86fdf7b36c94bcdf32beec15
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+ size : 4
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location : error.txt
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- job : v1.0/empty.json
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- tool : v1.0/egrep- stderr-shortcut.cwl
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+ tool : v1.0/stderr-shortcut.cwl
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doc : Test command line with stderr redirection, brief syntax
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output :
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output_file :
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class : File
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- checksum : sha1$cec7b8746a78c42060c96505887449bca0142976
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- size : 84
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+ checksum : sha1$f1d2d2f924e986ac86fdf7b36c94bcdf32beec15
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+ size : 4
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location : Any
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- output :
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output_file :
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class : File
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- size : 84
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- checksum : sha1$cec7b8746a78c42060c96505887449bca0142976
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+ size : 4
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+ checksum : sha1$f1d2d2f924e986ac86fdf7b36c94bcdf32beec15
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location : std.err
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job : v1.0/empty.json
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- tool : v1.0/egrep- stderr-mediumcut.cwl
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+ tool : v1.0/stderr-mediumcut.cwl
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doc : Test command line with stderr redirection, named brief syntax
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- job : v1.0/cat-job.json
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class: CommandLineTool
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cwlVersion: v1.0
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doc : "Test of capturing stderr output in a docker container. "
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- hints :
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- DockerRequirement:
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- dockerPull: debian:wheezy
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-
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inputs : []
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-
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outputs :
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output_file:
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type : stderr
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-
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- baseCommand : egrep
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- successCodes : [2]
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-
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+ baseCommand : [sh, -c, "echo foo 1>&2" ]
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stderr : std.err
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class: CommandLineTool
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cwlVersion: v1.0
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doc : "Test of capturing stderr output in a docker container. "
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- hints :
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- DockerRequirement:
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- dockerPull: debian:wheezy
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-
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inputs : []
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-
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outputs :
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output_file:
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type : stderr
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-
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- baseCommand : egrep
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- successCodes : [2]
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+ baseCommand : [sh, -c, "echo foo 1>&2" ]
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class: CommandLineTool
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cwlVersion: v1.0
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doc : "Test of capturing stderr output in a docker container. "
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- hints :
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- DockerRequirement:
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- dockerPull: debian:wheezy
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inputs : []
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outputs :
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output_file:
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type : File
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outputBinding : {glob : error.txt}
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- baseCommand : egrep
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- successCodes : [2]
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+ baseCommand : [sh, -c, "echo foo 1>&2" ]
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stderr : error.txt
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doc : Test command execution in Docker with stdout redirection
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- job : v1.1.0-dev1/empty.json
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- tool : v1.1.0-dev1/egrep- stderr.cwl
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+ tool : v1.1.0-dev1/stderr.cwl
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doc : Test command line with stderr redirection
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output :
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output_file :
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class : File
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- checksum : sha1$cec7b8746a78c42060c96505887449bca0142976
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- size : 84
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+ checksum : sha1$f1d2d2f924e986ac86fdf7b36c94bcdf32beec15
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+ size : 4
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location : error.txt
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- job : v1.1.0-dev1/empty.json
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- tool : v1.1.0-dev1/egrep- stderr-shortcut.cwl
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+ tool : v1.1.0-dev1/stderr-shortcut.cwl
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doc : Test command line with stderr redirection, brief syntax
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output :
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output_file :
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class : File
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- checksum : sha1$cec7b8746a78c42060c96505887449bca0142976
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- size : 84
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+ checksum : sha1$f1d2d2f924e986ac86fdf7b36c94bcdf32beec15
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+ size : 4
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location : Any
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- output :
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output_file :
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class : File
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- size : 84
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- checksum : sha1$cec7b8746a78c42060c96505887449bca0142976
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+ size : 4
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+ checksum : sha1$f1d2d2f924e986ac86fdf7b36c94bcdf32beec15
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location : std.err
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job : v1.1.0-dev1/empty.json
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- tool : v1.1.0-dev1/egrep- stderr-mediumcut.cwl
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+ tool : v1.1.0-dev1/stderr-mediumcut.cwl
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doc : Test command line with stderr redirection, named brief syntax
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- job : v1.1.0-dev1/cat-job.json
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class: CommandLineTool
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cwlVersion: v1.1.0-dev1
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doc : "Test of capturing stderr output in a docker container. "
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- hints :
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- DockerRequirement:
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- dockerPull: debian:wheezy
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-
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inputs : []
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-
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outputs :
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output_file:
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type : stderr
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-
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- baseCommand : egrep
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- successCodes : [2]
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-
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+ baseCommand : [sh, -c, "echo foo 1>&2" ]
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stderr : std.err
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class: CommandLineTool
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cwlVersion: v1.1.0-dev1
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doc : "Test of capturing stderr output in a docker container. "
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- hints :
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- DockerRequirement:
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- dockerPull: debian:wheezy
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-
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inputs : []
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-
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outputs :
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output_file:
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type : stderr
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-
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- baseCommand : egrep
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- successCodes : [2]
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+ baseCommand : [sh, -c, "echo foo 1>&2" ]
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class: CommandLineTool
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cwlVersion: v1.1.0-dev1
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doc : "Test of capturing stderr output in a docker container. "
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- hints :
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- DockerRequirement:
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- dockerPull: debian:wheezy
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inputs : []
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outputs :
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output_file:
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type : File
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outputBinding : {glob : error.txt}
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- baseCommand : egrep
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- successCodes : [2]
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+ baseCommand : [sh, -c, "echo foo 1>&2" ]
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stderr : error.txt
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