initial description of cwl-runner interface

Author: mr-c

doc/cwl-runner.cwl

@@ -0,0 +1,49 @@
+#!/usr/bin/env cwl-runner
+class: CommandLineTool
+cwlVersion: "cwl:draft-3"
+
+inputs:
+ - id: outdir
+   type: string
+   default: outdir
+   inputBinding:
+    - prefix: "--outdir"
+
+ - id: quiet
+   type: bool
+   inputBinding:
+    - prefix: "--quiet"
+
+ - id: toolfile
+   type: File
+
+ - id: jobfile
+   type: File
+
+ - id: conformance-test
+   type: bool
+   inputBinding:
+    - prefix: "--conformance-test"
+
+ - id: basedir
+   type: string
+   inputBinding:
+    - prefix: "--basedir"
+
+ - id: no-container
+   type: bool
+   inputBinding:
+    - prefix: "--no-container"
+
+ - id: tmp-outdir-prefix
+   type: string
+   inputBinding:
+    - prefix: "--tmp-outdir-prefix"
+
+ - id: tmpdir-prefix
+   type: string
+   inputBinding:
+    - prefix: "--tmpdir-prefix"
+
+baseCommand: cwl-runner
+