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Peter Amstutz
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Add test executing compound document with absolute identifiers.
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2 files changed

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‎v1.0/conformance_test_v1.0.yaml

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location: output.txt
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size: 1111
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tool: v1.0/revsort.cwl
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doc: Test sample workflows from the specification
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doc: Test simple workflow
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- job: v1.0/cat-job.json
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output:
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job: v1.0/cat-job.json
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tool: v1.0/null-defined.cwl
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doc: Test that provided parameter is not null in expression
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- job: v1.0/revsort-job.json
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output:
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output:
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class: File
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checksum: sha1$b9214658cc453331b62c2282b772a5c063dbd284
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location: output.txt
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size: 1111
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tool: v1.0/revsort-packed.cwl#main
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doc: Test compound workflow document

‎v1.0/v1.0/revsort-packed.cwl

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{
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"cwlVersion": "v1.0",
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"$graph": [
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{
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"class": "Workflow",
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"doc": "Reverse the lines in a document, then sort those lines.",
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"hints": [
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{
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"class": "DockerRequirement",
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"dockerPull": "debian:8"
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}
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],
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"inputs": [
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{
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"type": "File",
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"doc": "The input file to be processed.",
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"id": "#main/input"
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},
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{
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"type": "boolean",
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"default": true,
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"doc": "If true, reverse (decending) sort",
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"id": "#main/reverse_sort"
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}
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],
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"outputs": [
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{
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"type": "File",
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"outputSource": "#main/sorted/output",
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"doc": "The output with the lines reversed and sorted.",
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"id": "#main/output"
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}
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],
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"steps": [
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{
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"in": [
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{
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"source": "#main/input",
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"id": "#main/rev/input"
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}
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],
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"out": [
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"#main/rev/output"
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],
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"run": "#revtool.cwl",
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"id": "#main/rev"
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},
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{
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"in": [
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{
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"source": "#main/rev/output",
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"id": "#main/sorted/input"
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},
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{
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"source": "#main/reverse_sort",
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"id": "#main/sorted/reverse"
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}
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],
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"out": [
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"#main/sorted/output"
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],
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"run": "#sorttool.cwl",
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"id": "#main/sorted"
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}
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],
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"id": "#main"
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},
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{
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"class": "CommandLineTool",
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"doc": "Reverse each line using the `rev` command",
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"inputs": [
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{
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"type": "File",
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"inputBinding": {},
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"id": "#revtool.cwl/input"
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}
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],
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"outputs": [
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{
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"type": "File",
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"outputBinding": {
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"glob": "output.txt"
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},
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"id": "#revtool.cwl/output"
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}
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],
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"baseCommand": "rev",
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"stdout": "output.txt",
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"id": "#revtool.cwl"
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},
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{
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"class": "CommandLineTool",
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"doc": "Sort lines using the `sort` command",
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"inputs": [
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{
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"id": "#sorttool.cwl/reverse",
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"type": "boolean",
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"inputBinding": {
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"position": 1,
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"prefix": "--reverse"
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}
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},
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{
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"id": "#sorttool.cwl/input",
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"type": "File",
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"inputBinding": {
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"position": 2
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}
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}
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],
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"outputs": [
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{
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"id": "#sorttool.cwl/output",
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"type": "File",
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"outputBinding": {
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"glob": "output.txt"
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}
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}
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],
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"baseCommand": "sort",
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"stdout": "output.txt",
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"id": "#sorttool.cwl"
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}
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]
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}

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