New structure (#226)

Author: kinow

.github/workflows/documentation-links.yaml

@@ -0,0 +1,20 @@
+# https://github.com/readthedocs/actions/tree/v1/preview#how-to-use-it
+name: Read the Docs Pull Request Preview
+on:
+  pull_request_target:
+    types:
+      - opened
+
+permissions:
+  pull-requests: write
+
+jobs:
+  documentation-links:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: readthedocs/actions/preview@v1
+        with:
+          project-slug: "common-workflow-languageuser-guide"
+          project-language: "en"
+          # message-template: ?
+          platform: "community"

.github/workflows/gh-pages.yaml

@@ -34,7 +34,7 @@ jobs:
           restore-keys: |
             ${{ runner.os }}-pip-
       - name: Install dependencies
-        run: python3 -m pip install -U -r ./requirements.txt
+        run: python3 -m pip install -U -e .[all]
 
       - name: Build documentation
         run: make html

.gitignore

@@ -11,3 +11,4 @@ _site
 .RData
 
 _build/
+*.egg-info/

.readthedocs.yaml

@@ -0,0 +1,20 @@
+version: 2
+
+build:
+  os: ubuntu-20.04
+  tools:
+    python: "3.9"
+  apt_packages:
+    - graphviz
+
+sphinx:
+  configuration: src/conf.py
+  builder: html
+
+python:
+  install:
+    - method: pip
+      path: .
+      extra_requirements:
+        - all
+

.travis.yml

@@ -13,9 +13,9 @@ branches:
     - main
     - /.*/
 
-before_script:
+install:
   - pip install -U pip setuptools wheel typing
-  - pip install cwltool cwltest html5lib
+  - pip install -e .[all]
 
 script:
   - make RUNNER=cwltool unittest-examples