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Here's an example dataset of a large dataset from @alimanfoo: https://nbviewer.jupyter.org/gist/alimanfoo/b74b08465727894538d5b161b3ced764
<xarray.Dataset> Dimensions: (__variants/BaseCounts_dim1: 4, __variants/MLEAC_dim1: 3, __variants/MLEAF_dim1: 3, alt_alleles: 3, ploidy: 2, samples: 1142, variants: 21442865) Coordinates: samples/ID (samples) object dask.array<chunksize=(1142,), meta=np.ndarray> variants/CHROM (variants) object dask.array<chunksize=(21442865,), meta=np.ndarray> variants/POS (variants) int32 dask.array<chunksize=(4194304,), meta=np.ndarray> Dimensions without coordinates: __variants/BaseCounts_dim1, __variants/MLEAC_dim1, __variants/MLEAF_dim1, alt_alleles, ploidy, samples, variants Data variables: variants/ABHet (variants) float32 dask.array<chunksize=(4194304,), meta=np.ndarray> variants/ABHom (variants) float32 dask.array<chunksize=(4194304,), meta=np.ndarray> variants/AC (variants, alt_alleles) int32 dask.array<chunksize=(4194304, 3), meta=np.ndarray> variants/AF (variants, alt_alleles) float32 dask.array<chunksize=(4194304, 3), meta=np.ndarray> ...
I know similarly large datasets with lots of dimensions come up in other contexts as well, e.g., with geophysical model output.
That's a very long first line! This would be easier to read as:
or maybe:
<xarray.Dataset> Dimensions: __variants/BaseCounts_dim1: 4 __variants/MLEAC_dim1: 3 __variants/MLEAF_dim1: 3 alt_alleles: 3 ploidy: 2 samples: 1142 variants: 21442865 Coordinates: samples/ID (samples) object dask.array<chunksize=(1142,), meta=np.ndarray> variants/CHROM (variants) object dask.array<chunksize=(21442865,), meta=np.ndarray> variants/POS (variants) int32 dask.array<chunksize=(4194304,), meta=np.ndarray> Dimensions without coordinates: __variants/BaseCounts_dim1, __variants/MLEAC_dim1, __variants/MLEAF_dim1, alt_alleles, ploidy, samples, variants Data variables: variants/ABHet (variants) float32 dask.array<chunksize=(4194304,), meta=np.ndarray> variants/ABHom (variants) float32 dask.array<chunksize=(4194304,), meta=np.ndarray> variants/AC (variants, alt_alleles) int32 dask.array<chunksize=(4194304, 3), meta=np.ndarray> variants/AF (variants, alt_alleles) float32 dask.array<chunksize=(4194304, 3), meta=np.ndarray> ...
Dimensions without coordinates could probably use some wrapping, too.
Dimensions without coordinates
The text was updated successfully, but these errors were encountered:
Thanks @shoyer for raising this, would be nice to wrap the dimensions, I'd vote for one per line.
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Agree with @alimanfoo !
Maybe (eventually, second priority) with the dim lengths aligned. Or do we end up with a table-within-a-table then?
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stale
Done in #5662.
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Here's an example dataset of a large dataset from @alimanfoo:
https://nbviewer.jupyter.org/gist/alimanfoo/b74b08465727894538d5b161b3ced764
I know similarly large datasets with lots of dimensions come up in other contexts as well, e.g., with geophysical model output.
That's a very long first line! This would be easier to read as:
or maybe:
Dimensions without coordinates
could probably use some wrapping, too.The text was updated successfully, but these errors were encountered: