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mamba -> conda
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.github/workflows/qiita-ci.yml

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@@ -64,11 +64,11 @@ jobs:
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# Setting up main qiita conda environment
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conda config --add channels conda-forge
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conda deactivate
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conda update conda
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echo "INSTALLING MAMBA"
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conda install --quiet mamba
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echo "INSTALLING QIITA VIA MAMBA"
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mamba create --quiet --yes -n qiita python=3.9 pip libgfortran numpy nginx cython redis
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# conda update conda
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# echo "INSTALLING MAMBA"
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# conda install --quiet mamba
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# echo "INSTALLING QIITA VIA MAMBA"
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conda create --quiet --yes -n qiita python=3.9 pip libgfortran numpy nginx cython redis
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conda env list
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conda activate qiita
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pip install -U pip
@@ -109,7 +109,7 @@ jobs:
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shell: bash -l {0}
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run: |
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wget https://data.qiime2.org/distro/core/qiime2-2019.4-py36-linux-conda.yml
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mamba env create --quiet -n qtp-biom --file qiime2-2019.4-py36-linux-conda.yml
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conda env create --quiet -n qtp-biom --file qiime2-2019.4-py36-linux-conda.yml
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rm qiime2-2019.4-py36-linux-conda.yml
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export QIITA_SERVER_CERT=`pwd`/qiita_core/support_files/server.crt
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export QIITA_CONFIG_FP=`pwd`/qiita_core/support_files/config_test.cfg

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