Merge branch 'develop' into conda-update

Author: tobiasdiez

.github/workflows/ci-macos.yml

@@ -34,6 +34,7 @@ jobs:
     uses: ./.github/workflows/macos.yml
     with:
       stage: "1"
+      timeout: 14400
 
   stage-2:
     uses: ./.github/workflows/macos.yml
@@ -90,7 +91,7 @@ jobs:
         run: |
           git config --global user.email "[email protected]"
           git config --global user.name "Sage GitHub CI"
-          SAGE_ROOT=. SAGE_SRC=./src src/bin/sage-update-version $(git describe --tags) || echo "(ignoring error)"
+          SAGE_ROOT=. SAGE_SRC=./src src/bin/sage-update-version $(cat src/VERSION.txt).dev0 || echo "(ignoring error)"
       - name: make dist
         run: |
           ./configure --enable-download-from-upstream-url && make dist
@@ -108,7 +109,7 @@ jobs:
       fail-fast: false
       max-parallel: 4
       matrix:
-        os: [ macos-11, macos-12 ]
+        os: [ macos-11, macos-12, macos-14 ]
         tox_system_factor: [macos-nobootstrap]
         tox_packages_factor: [minimal]
         xcode_version_factor: [default]
@@ -129,7 +130,7 @@ jobs:
         if: contains(matrix.tox_system_factor, 'nobootstrap')
       - name: Move homebrew away
         run: |
-          (cd /usr/local && for a in bin etc include lib opt sbin share; do sudo mv $a $a-moved; done)
+          (cd $(brew --prefix) && for a in bin etc include lib opt sbin share; do sudo mv $a $a-moved; done)
       - name: Select Xcode version
         run: |
           if [ ${{ matrix.xcode_version_factor }} != default ]; then sudo xcode-select -s /Applications/Xcode_${{ matrix.xcode_version_factor }}.app; fi
@@ -140,7 +141,8 @@ jobs:
         # We use a high parallelization on purpose in order to catch possible parallelization bugs in the build scripts.
         # For doctesting, we use a lower parallelization to avoid timeouts.
         run: |
-          MAKE="make -j12" tox -e $TOX_ENV -- SAGE_NUM_THREADS=4 $TARGETS
+          (sleep 20000; pkill make) &
+          MAKE="make -j12" tox -e $TOX_ENV -- SAGE_NUM_THREADS=6 $TARGETS
       - name: Prepare logs artifact
         run: |
           mkdir -p "artifacts/$LOGS_ARTIFACT_NAME"; cp -r .tox/*/log "artifacts/$LOGS_ARTIFACT_NAME"

.github/workflows/macos.yml

@@ -19,17 +19,21 @@ on:
         type: string
       # System configuration
       osversion_xcodeversion_toxenv_tuples:
+        # As of 2024-02, "runs-on: macos-latest" is macos-12.
+        # and "runs-on: macos-14" selects the new M1 runners.
+        # https://docs.github.com/en/actions/using-github-hosted-runners/about-github-hosted-runners/about-github-hosted-runners#standard-github-hosted-runners-for-public-repositories
         description: 'Stringified JSON object'
         default: >-
-          [["latest", "",             "homebrew-macos-usrlocal-minimal"],
-           ["latest", "",             "homebrew-macos-usrlocal-standard"],
-           ["11",     "xcode_13.2.1", "homebrew-macos-usrlocal-minimal"],
+          [["11",     "xcode_13.2.1", "homebrew-macos-usrlocal-minimal"],
+           ["12",     "",             "homebrew-macos-usrlocal-minimal"],
            ["12",     "",             "homebrew-macos-usrlocal-standard"],
+           ["12",     "",             "homebrew-macos-usrlocal-python3_xcode-standard"],
+           ["12",     "",             "homebrew-macos-usrlocal-maximal"],
            ["13",     "xcode_15.0",   "homebrew-macos-usrlocal-standard"],
-           ["latest", "",             "homebrew-macos-usrlocal-maximal"],
-           ["latest", "",             "homebrew-macos-usrlocal-python3_xcode-standard"],
+           ["14",     "",             "homebrew-macos-opthomebrew-standard"],
            ["latest", "",             "conda-forge-macos-minimal"],
-           ["latest", "",             "conda-forge-macos-standard"]]
+           ["latest", "",             "conda-forge-macos-standard"],
+           ["14",     "",             "conda-forge-macos-standard"]]
         type: string
       extra_sage_packages:
         description: 'Extra Sage packages to install as system packages'
@@ -41,6 +45,10 @@ on:
       free_disk_space:
         default: false
         type: boolean
+      timeout:
+        description: 'Elapsed time (seconds) at which to kill the build'
+        default: 20000
+        type: number
       #
       # For use in upstream CIs.
       #
@@ -74,10 +82,16 @@ jobs:
           repository: ${{ inputs.sage_repo }}
           ref: ${{ inputs.sage_ref }}
           fetch-depth: 10000
-
+      - uses: actions/setup-python@v5
+        # As of 2024-02-03, the macOS M1 runners do not have preinstalled python or pipx.
+        # Installing pipx follows the approach of https://github.com/pypa/cibuildwheel/pull/1743
+        id: python
+        with:
+          python-version: "3.8 - 3.12"
+          update-environment: false
       - name: Install test prerequisites
         run: |
-          brew install tox
+          "${{ steps.python.outputs.python-path }}" -m pip install pipx
       - name: Download upstream artifact
         uses: actions/download-artifact@v3
         with:
@@ -129,7 +143,8 @@ jobs:
             *)               export TARGETS_PRE="${{ inputs.targets_pre }}" TARGETS="${{ inputs.targets }} TARGETS_OPTIONAL="${{ inputs.targets_optional }}
                              ;;
           esac
-          MAKE="make -j12" tox -e $TOX_ENV -- SAGE_NUM_THREADS=4 $TARGETS
+          (sleep ${{ inputs.timeout }}; pkill make) &
+          MAKE="make -j12" EXTRA_SAGE_PACKAGES="${{ inputs.extra_sage_packages }}" "${{ steps.python.outputs.python-path }}" -m pipx run tox -e $TOX_ENV -- SAGE_NUM_THREADS=6 $TARGETS
       - name: Prepare logs artifact
         run: |
           mkdir -p "artifacts/$LOGS_ARTIFACT_NAME"; cp -r .tox/*/log "artifacts/$LOGS_ARTIFACT_NAME"

CITATION.cff

@@ -4,8 +4,8 @@ title: SageMath
 abstract: SageMath is a free open-source mathematics software system.
 authors:
 - name: "The SageMath Developers"
-version: 10.3.rc0
+version: 10.3.rc2
 doi: 10.5281/zenodo.593563
-date-released: 2024-02-25
+date-released: 2024-03-04
 repository-code: "https://github.com/sagemath/sage"
 url: "https://www.sagemath.org/"

README.md

@@ -420,16 +420,47 @@ in the Installation Guide.
 Alternative Installation using PyPI
 ---------------
 
-For installation of `sage` in python using `pip` you need to install `sagemath-standard`. First, activate your python virtual environment and follow these steps:
+For installing Sage in a Python environment from PyPI, Sage provides the
+`pip`-installable package [sagemath-standard](https://pypi.org/project/sagemath-standard/).
 
-            $ python3 -m pip install sage_conf
-            $ ls $(sage-config SAGE_SPKG_WHEELS)
-            $ python3 -m pip install $(sage-config SAGE_SPKG_WHEELS)/*.whl sage_setup
-            $ python3 -m pip install --no-build-isolation sagemath-standard
+Unless you need to install Sage into a specific existing environment, we recommend
+to create and activate a fresh virtual environment, for example `~/sage-venv/`:
 
-You need to install `sage_conf`, a wheelhouse of various python packages. You can list the wheels using `ls $(sage-config SAGE_SPKG_WHEELS)`. After manual installation of these wheels, you can install the sage library, `sagemath-standard`.
+            $ python3 -m venv ~/sage-venv
+            $ source ~/sage-venv/bin/activate
 
-**NOTE:** You can find `sage` and `sagemath` pip packages but with these packages, you will encounter `ModuleNotFoundError`.
+As the first installation step, install [sage_conf](https://pypi.org/project/sage-conf/),
+which builds various prerequisite packages in a subdirectory of `~/.sage/`:
+
+            (sage-venv) $ python3 -m pip install -v sage_conf
+
+After a successful installation, a wheelhouse provides various Python packages.
+You can list the wheels using the command:
+
+            (sage-venv) $ ls $(sage-config SAGE_SPKG_WHEELS)
+
+If this gives an error saying that `sage-config` is not found, check any messages
+that the `pip install` command may have printed. You may need to adjust your `PATH`,
+for example by:
+
+            $ export PATH="$(python3 -c 'import sysconfig; print(sysconfig.get_path("scripts", "posix_user"))'):$PATH"
+
+Now install the packages from the wheelhouse and the [sage_setup](https://pypi.org/project/sage-conf/)
+package, and finally install the Sage library:
+
+            (sage-venv) $ python3 -m pip install $(sage-config SAGE_SPKG_WHEELS)/*.whl sage_setup
+            (sage-venv) $ python3 -m pip install --no-build-isolation -v sagemath-standard
+
+The above instructions install the latest stable release of Sage.
+To install the latest development version instead, add the switch `--pre` to all invocations of
+`python3 -m pip install`.
+
+**NOTE:** PyPI has various other `pip`-installable packages with the word "sage" in their names.
+Some of them are maintained by the SageMath project, some are provided by SageMath users for
+various purposes, and others are entirely unrelated to SageMath. Do not use the packages
+`sage` and `sagemath`. For a curated list of packages, see the chapter
+[Packages and Features](https://doc.sagemath.org/html/en/reference/spkg/index.html) of the
+Sage Reference Manual.
 
 SageMath Docker images
 ----------------------

VERSION.txt

@@ -1 +1 @@
-SageMath version 10.3.rc0, Release Date: 2024-02-25
+SageMath version 10.3.rc2, Release Date: 2024-03-04

build/pkgs/cmake/spkg-configure.m4

@@ -1,13 +1,17 @@
-SAGE_SPKG_CONFIGURE(
-    [cmake], [
-        AC_CACHE_CHECK([for cmake >= 3.11], [ac_cv_path_CMAKE], [
-        AC_PATH_PROGS_FEATURE_CHECK([CMAKE], [cmake], [
-            cmake_version=`$ac_path_CMAKE --version 2>&1 \
-                | $SED -n -e 's/cmake version *\([[0-9]]*\.[[0-9]]*\.[[0-9]]*\)/\1/p'`
-            AS_IF([test -n "$cmake_version"], [
-                AX_COMPARE_VERSION([$cmake_version], [ge], [3.11], [
-                    ac_cv_path_CMAKE="$ac_path_CMAKE"
-                    ac_path_CMAKE_found=:
+SAGE_SPKG_CONFIGURE([cmake], [dnl
+        AC_CACHE_CHECK([for cmake >= 3.11], [ac_cv_path_CMAKE], [dnl
+        dnl Do not accept cmake installed via https://pypi.org/project/cmake/
+        dnl in the default user scheme; it will not work in our venv because
+        dnl we set PYTHONUSERBASE in sage-env.
+        WITH_SAGE_PYTHONUSERBASE([dnl
+            AC_PATH_PROGS_FEATURE_CHECK([CMAKE], [cmake], [dnl
+                cmake_version=`$ac_path_CMAKE --version 2>&1 \
+                    | $SED -n -e 's/cmake version *\([[0-9]]*\.[[0-9]]*\.[[0-9]]*\)/\1/p'`
+                AS_IF([test -n "$cmake_version"], [dnl
+                    AX_COMPARE_VERSION([$cmake_version], [ge], [3.11], [dnl
+                        ac_cv_path_CMAKE="$ac_path_CMAKE"
+                        ac_path_CMAKE_found=:
+                    ])
                 ])
             ])
         ])

build/pkgs/configure/checksums.ini

@@ -1,4 +1,4 @@
 tarball=configure-VERSION.tar.gz
-sha1=a3fc8c3bf9198d28a8f2d5a08cffdcf519150b77
-md5=32f4f1763765232dc7e7431d5e48e129
-cksum=708121316
+sha1=ff35813eb1168b754ab9470066b39aeaca9d462c
+md5=834bc382880b0cfea48fa00bdff79534
+cksum=4002007446

build/pkgs/configure/package-version.txt

@@ -1 +1 @@
-0fb793fa91a0b46de452036b521cbbaeee878340
+872ca39ec422cacd1005dd6b1ccd9737d5d88712

build/pkgs/dsdp/spkg-install.in

@@ -1,6 +1,7 @@
 cd src
 cp ../patches/CMakeLists.txt .
 sdh_cmake -DCMAKE_BUILD_TYPE=Release \
+          -DCMAKE_VERBOSE_MAKEFILE=ON \
           -DBUILD_SHARED_LIBS=ON \
           -DBLA_VENDOR=OpenBLAS \
           -DBLAS_LIBRARIES="$(pkg-config --libs blas)" \

build/pkgs/flint/spkg-configure.m4

@@ -1,11 +1,26 @@
 SAGE_SPKG_CONFIGURE([flint], [
     SAGE_SPKG_DEPCHECK([mpfr], [
-        AC_CHECK_HEADER(flint/flint.h, [
+        AC_CHECK_HEADER(flint/flint.h, [dnl
           dnl gr_get_fexpr appears in Flint 3.0
-          AC_SEARCH_LIBS([gr_get_fexpr], [flint], [], [sage_spkg_install_flint=yes])
+          AC_SEARCH_LIBS([gr_get_fexpr], [flint], [dnl
+            dnl Flint 3.1 is too new
+            AC_MSG_CHECKING([whether FLINT version is >= 3.1.0])
+            AC_COMPILE_IFELSE([dnl
+              AC_LANG_PROGRAM([[#include <flint/flint.h>
+                                #if __FLINT_RELEASE >= 30100
+                                # error "FLINT 3.1 is too new"
+                                #endif
+                              ]])
+            ], [dnl
+              AC_MSG_RESULT([no])
+            ], [dnl
+              AC_MSG_RESULT([yes; too new])
+              sage_spkg_install_flint=yes
+            ])
+          ], [sage_spkg_install_flint=yes])
         ], [sage_spkg_install_flint=yes])
     ])
-], [], [], [
+], [], [], [dnl
      if test x$sage_spkg_install_flint = xyes; then
         AC_SUBST(SAGE_FLINT_PREFIX, ['$SAGE_LOCAL'])
      else