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Main build is failing with Pandas 2.1.0 #1121

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tomwhite opened this issue Sep 4, 2023 · 0 comments · Fixed by #1122
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Main build is failing with Pandas 2.1.0 #1121

tomwhite opened this issue Sep 4, 2023 · 0 comments · Fixed by #1122
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process + tools upstream Used when our build breaks due to upstream changes

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tomwhite commented Sep 4, 2023

From @timothymillar at https://github.com/pystatgen/sgkit/pull/1119#issuecomment-1704879496

looks like some new test failures due to upstream changes. regenie, gwas_linear_regression and bgen tests are failing with FutureWarning: unique with argument that is not not a Series, Index, ExtensionArray, or np.ndarray is deprecated and will raise in a future version. At first glance it looks like this is caused by a change in pandas 2.1.0: pandas-dev/pandas#52986
@tomwhite tomwhite added process + tools upstream Used when our build breaks due to upstream changes labels Sep 4, 2023
@tomwhite tomwhite mentioned this issue Sep 4, 2023
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Fix main build and windows build tomwhite/sgkit
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