diff --git a/revdep/README.md b/revdep/README.md index 02da59bd09..e8d4dadebf 100644 --- a/revdep/README.md +++ b/revdep/README.md @@ -1,77 +1,165 @@ # Platform -|field |value | -|:--------|:--------------------------------------------------| -|version |R Under development (unstable) (2019-03-18 r76245) | -|os |macOS High Sierra 10.13.6 | -|system |x86_64, darwin15.6.0 | -|ui |X11 | -|language |(EN) | -|collate |en_US.UTF-8 | -|ctype |en_US.UTF-8 | -|tz |America/New_York | -|date |2019-03-27 | +|field |value | +|:--------|:----------------------------| +|version |R version 3.5.3 (2019-03-11) | +|os |macOS High Sierra 10.13.6 | +|system |x86_64, darwin15.6.0 | +|ui |X11 | +|language |(EN) | +|collate |en_US.UTF-8 | +|ctype |en_US.UTF-8 | +|tz |America/New_York | +|date |2019-05-03 | # Dependencies |package |old |new |Δ | |:-------|:-----|:----------|:--| -|ggplot2 |3.1.0 |3.1.0.9000 |* | +|ggplot2 |3.1.1 |3.1.1.9000 |* | # Revdeps -## Couldn't check (9) +## Failed to check (99) -|package |version |error |warning |note |source | -|:---------------|:-------|:-----|:-------|:----|:---------------------------------------------------------------| -|annotatr |? | | | |[cran/annotatr](https://github.com/cran/annotatr) | -|ChIPseeker |? | | | |[cran/ChIPseeker](https://github.com/cran/ChIPseeker) | -|clusterProfiler |? | | | |[cran/clusterProfiler](https://github.com/cran/clusterProfiler) | -|fgsea |? | | | |[cran/fgsea](https://github.com/cran/fgsea) | -|LINC |? | | | |[cran/LINC](https://github.com/cran/LINC) | -|MEAL |? | | | |[cran/MEAL](https://github.com/cran/MEAL) | -|methylGSA |? | | | |[cran/methylGSA](https://github.com/cran/methylGSA) | -|ReactomePA |? | | | |[cran/ReactomePA](https://github.com/cran/ReactomePA) | -|SMITE |? | | | |[cran/SMITE](https://github.com/cran/SMITE) | +|package |version |error |warning |note | +|:--------------------------------|:---------|:------|:-------|:----| +|affycoretools |1.54.0 |1 | | | +|aslib |0.1 |1 | | | +|BaalChIP |1.8.0 |1 | |2 | +|BACA |1.3 |1 | | | +|BACCT |1.0 |1 | | | +|bamdit |3.2.1 |1 | | | +|BayesRS |0.1.3 |1 | | | +|BNSP |2.0.8 |1 | | | +|BPEC |1.3.0 |1 | | | +|bsam |1.1.2 |1 | | | +|BTSPAS |2014.0901 |1 | |1 | +|CaliCo |0.1.1 |1 | | | +|ChIPseeker |? | | | | +|chromstaR |1.8.1 |1 | | | +|clusterProfiler |? | | | | +|CNVrd2 |1.20.0 |1 | | | +|CollapsABEL |0.10.11 |1 | | | +|colorednoise |1.0.4 |1 | | | +|crmPack |0.2.9 |1 | | | +|Crossover |0.1-17 |1 | | | +|DaMiRseq |1.6.2 |1 | | | +|Deducer |0.7-9 |1 | | | +|DeLorean |1.5.0 |1 | | | +|DiffBind |2.10.0 |1 | |2 | +|DiversityOccupancy |1.0.6 |1 | | | +|dynfrail |0.5.2 |1 | | | +|dynr |0.1.14-9 |1 | | | +|eegc |1.8.1 |1 |1 |2 | +|ELMER |2.6.3 |1 | | | +|esATAC |1.4.5 |1 | |2 | +|evoper |0.5.0 |1 | | | +|ewoc |0.2.0 |1 | | | +|fgsea |? | | | | +|fingerPro |1.1 |1 | | | +|fsdaR |0.4-6 |1 | | | +|G2Sd |2.1.5 |1 | | | +|GARS |1.2.0 |1 | | | +|[gastempt](failures.md#gastempt) |0.4.4 |__+1__ | |-3 | +|HPAanalyze |1.0.0 |1 | | | +|iBMQ |1.22.0 |1 | |1 | +|iCNV |1.2.1 |1 | | | +|imageData |0.1-50 |1 | | | +|imbalance |1.0.0 |1 | | | +|Imetagene |1.12.0 |1 | | | +|InSilicoVA |1.2.5 |1 | | | +|jarbes |1.7.2 |1 | | | +|joineRML |0.4.2 |1 | | | +|JointAI |0.5.0 |1 | | | +|likeLTD |6.3.0 |1 | | | +|lilikoi |0.1.0 |1 | | | +|LINC |? | | | | +|llama |0.9.2 |1 | | | +|LLSR |0.0.2.19 |1 | | | +|matchingMarkets |1.0-1 |1 | | | +|mbgraphic |1.0.1 |1 | | | +|mcmcabn |0.1 |1 | | | +|MEAL |? | | | | +|methylGSA |? | | | | +|mleap |0.1.3 |1 | | | +|morse |3.2.2 |1 | | | +|MSnbase |2.8.3 |1 | |3 | +|mwaved |1.1.6 |1 | | | +|NPflow |0.13.1 |1 | | | +|OpenStreetMap |0.3.3 |1 | | | +|openVA |1.0.8 |1 | | | +|petro.One |0.2.3 |1 | | | +|phase1PRMD |1.0.1 |1 | | | +|phase1RMD |1.0.8 |1 | | | +|pimeta |1.1.2 |1 | | | +|poppr |2.8.2 |1 | | | +|PortfolioEffectHFT |1.8 |1 | | | +|psygenet2r |1.14.0 |1 |1 |3 | +|qdap |2.3.2 |1 | | | +|rcellminer |2.4.0 |1 | |1 | +|RcmdrPlugin.FuzzyClust |1.1 |1 | | | +|RDAVIDWebService |1.20.0 |1 | | | +|Rdrools |1.1.1 |1 | | | +|ReactomePA |? | | | | +|rmcfs |1.2.15 |1 | | | +|RnBeads |2.0.1 |1 | |2 | +|robustHD |0.5.1 |1 | | | +|rpanel |1.1-4 |1 | | | +|rpf |0.62 |1 | | | +|rrepast |0.7.0 |1 | | | +|RSCAT |1.0.0 |1 | | | +|rstanarm |2.18.2 |1 | |3 | +|rsvg |1.3 |1 | | | +|RtutoR |1.2 |1 | | | +|SeqFeatR |0.3.1 |1 | | | +|simmr |0.3 |1 | | | +|sitmo |2.0.1 |1 | | | +|SMITE |? | | | | +|spcosa |0.3-8 |1 | | | +|StarBioTrek |1.8.5 |1 | | | +|TCGAbiolinks |2.10.5 |1 | | | +|TeachingDemos |2.10 |1 | |1 | +|vortexR |1.1.6 |1 | | | +|XLConnect |0.2-15 |1 | | | +|zooaRchGUI |1.0.2 |1 | | | -## Broken (36) +## New problems (34) -|package |version |error |warning |note |source | -|:--------------------------|:-------|:-----|:-------|:----|:-------------------------------------------------------------------------------------| -|AneuFinder |1.10.2 | | | |[cran/AneuFinder](https://github.com/cran/AneuFinder) | -|BaalChIP |1.8.0 | | | |[cran/BaalChIP](https://github.com/cran/BaalChIP) | -|Bclim |3.1.2 | | | |[cran/Bclim](https://github.com/cran/Bclim) | -|CATALYST |1.6.7 | | | |[cran/CATALYST](https://github.com/cran/CATALYST) | -|cellHTS2 |2.46.1 | | | |[cran/cellHTS2](https://github.com/cran/cellHTS2) | -|ChIPexoQual |1.6.0 | | | |[cran/ChIPexoQual](https://github.com/cran/ChIPexoQual) | -|chromstaR |1.8.1 | | | |[cran/chromstaR](https://github.com/cran/chromstaR) | -|ClassifyR |2.2.6 | | | |[cran/ClassifyR](https://github.com/cran/ClassifyR) | -|clusternomics |0.1.1 | | | |[cran/clusternomics](https://github.com/cran/clusternomics) | -|CNPBayes |1.12.0 | | | |[cran/CNPBayes](https://github.com/cran/CNPBayes) | -|DeepBlueR |1.8.0 | | | |[cran/DeepBlueR](https://github.com/cran/DeepBlueR) | -|DiffBind |2.10.0 | | | |[cran/DiffBind](https://github.com/cran/DiffBind) | -|dmrseq |1.2.5 | | | |[cran/dmrseq](https://github.com/cran/dmrseq) | -|FindMyFriends |1.12.0 | | | |[cran/FindMyFriends](https://github.com/cran/FindMyFriends) | -|GOTHiC |1.18.1 | | | |[cran/GOTHiC](https://github.com/cran/GOTHiC) | -|HTSSIP |1.4.0 | | | |[cran/HTSSIP](https://github.com/cran/HTSSIP) | -|IHWpaper |1.10.0 | | | |[cran/IHWpaper](https://github.com/cran/IHWpaper) | -|lime |0.4.1 | | | |[cran/lime](https://github.com/cran/lime) | -|MSnbase |2.8.3 | | | |[cran/MSnbase](https://github.com/cran/MSnbase) | -|msPurity |1.8.1 | | | |[cran/msPurity](https://github.com/cran/msPurity) | -|onemap |2.1.1 | | | |[cran/onemap](https://github.com/cran/onemap) | -|phylosim |3.0.2 | | | |[cran/phylosim](https://github.com/cran/phylosim) | -|pmc |1.0.3 | | | |[cran/pmc](https://github.com/cran/pmc) | -|pRoloc |1.22.2 | | | |[cran/pRoloc](https://github.com/cran/pRoloc) | -|PureCN |1.12.2 | | | |[cran/PureCN](https://github.com/cran/PureCN) | -|RcmdrPlugin.FuzzyClust |1.1 | | | |[cran/RcmdrPlugin.FuzzyClust](https://github.com/cran/RcmdrPlugin.FuzzyClust) | -|scruff |1.0.2 | | | |[cran/scruff](https://github.com/cran/scruff) | -|sdmpredictors |0.2.8 | | | |[cran/sdmpredictors](https://github.com/cran/sdmpredictors) | -|simulator |0.2.0 | | | |[cran/simulator](https://github.com/cran/simulator) | -|Single.mTEC.Transcriptomes |1.10.0 | | | |[cran/Single.mTEC.Transcriptomes](https://github.com/cran/Single.mTEC.Transcriptomes) | -|SNPhood |1.12.0 | | | |[cran/SNPhood](https://github.com/cran/SNPhood) | -|TeachingDemos |2.10 | | | |[cran/TeachingDemos](https://github.com/cran/TeachingDemos) | -|TPP |3.10.1 | | | |[cran/TPP](https://github.com/cran/TPP) | -|transcriptogramer |1.4.1 | | | |[cran/transcriptogramer](https://github.com/cran/transcriptogramer) | -|variancePartition |1.12.3 | | | |[cran/variancePartition](https://github.com/cran/variancePartition) | -|XBSeq |1.14.1 | | | |[cran/XBSeq](https://github.com/cran/XBSeq) | +|package |version |error |warning |note | +|:------------------------------------------------|:-------|:--------|:-------|:--------| +|[bayesAB](problems.md#bayesab) |1.1.1 |__+1__ | | | +|[breathteststan](problems.md#breathteststan) |0.4.7 |__+1__ | |1 | +|[CSTools](problems.md#cstools) |1.0.0 |__+1__ | | | +|[esmisc](problems.md#esmisc) |0.0.3 |__+1__ | | | +|[fergm](problems.md#fergm) |1.1.4 |__+1__ | | | +|[fingertipscharts](problems.md#fingertipscharts) |0.0.5 |__+2__ | |1 | +|[ggalt](problems.md#ggalt) |0.4.0 | |__+1__ |1 | +|[ggforce](problems.md#ggforce) |0.2.2 | |__+1__ | | +|[ggpol](problems.md#ggpol) |0.0.5 | |__+1__ |1 | +|[ggpolypath](problems.md#ggpolypath) |0.1.0 | |__+1__ | | +|[ggsolvencyii](problems.md#ggsolvencyii) |0.1.2 | |__+1__ | | +|[ggspatial](problems.md#ggspatial) |1.0.3 | |__+1__ |1 | +|[ggstance](problems.md#ggstance) |0.3.1 |__+1__ | | | +|[ggstatsplot](problems.md#ggstatsplot) |0.0.10 |__+1__ | | | +|[ggtern](problems.md#ggtern) |3.1.0 | |__+1__ |1 | +|[heatmaply](problems.md#heatmaply) |0.15.2 | | |1 __+1__ | +|[HistDAWass](problems.md#histdawass) |1.0.1 |__+1__ | | | +|[incR](problems.md#incr) |1.1.0 |__+1__ | |1 | +|[interflex](problems.md#interflex) |1.0.4 |__+1__ | | | +|[jcolors](problems.md#jcolors) |0.0.3 |__+1__ | | | +|[lime](problems.md#lime) |0.4.1 |__+1__ | | | +|[mlr](problems.md#mlr) |2.14.0 |__+1__ | |1 | +|[MTLR](problems.md#mtlr) |0.2.0 |__+1__ | | | +|[OUTRIDER](problems.md#outrider) |1.0.4 |1 __+1__ | |2 | +|[PathoStat](problems.md#pathostat) |1.8.4 |__+1__ | |1 | +|[PepsNMR](problems.md#pepsnmr) |1.0.2 |__+1__ | | | +|[SCORPIUS](problems.md#scorpius) |1.0.2 |__+1__ | | | +|[shiny](problems.md#shiny) |1.3.2 |__+1__ | |1 | +|[ssMousetrack](problems.md#ssmousetrack) |1.1.5 |-1 | |__+2__ | +|[stats19](problems.md#stats19) |0.2.1 |__+1__ | | | +|[trialr](problems.md#trialr) |0.1.0 |-1 | |__+3__ | +|[vdiffr](problems.md#vdiffr) |0.3.0 |__+1__ | |1 | +|[vidger](problems.md#vidger) |1.2.1 |__+1__ | |1 | +|[xpose](problems.md#xpose) |0.4.4 |__+2__ | | | diff --git a/revdep/failures.md b/revdep/failures.md new file mode 100644 index 0000000000..f51eb4678b --- /dev/null +++ b/revdep/failures.md @@ -0,0 +1,9186 @@ +# affycoretools + +
+ +* Version: 1.54.0 +* Source code: https://github.com/cran/affycoretools +* Date/Publication: 2018-10-30 +* Number of recursive dependencies: 174 + +Run `revdep_details(,"affycoretools")` for more info + +
+ +## In both + +* checking whether package ‘affycoretools’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/affycoretools/new/affycoretools.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘affycoretools’ ... +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : + there is no package called 'PFAM.db' +ERROR: lazy loading failed for package 'affycoretools' +* removing '/Users/max/github/forks/ggplot2/revdep/checks.noindex/affycoretools/new/affycoretools.Rcheck/affycoretools' + +``` +### CRAN + +``` +* installing *source* package ‘affycoretools’ ... +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : + there is no package called 'PFAM.db' +ERROR: lazy loading failed for package 'affycoretools' +* removing '/Users/max/github/forks/ggplot2/revdep/checks.noindex/affycoretools/old/affycoretools.Rcheck/affycoretools' + +``` +# aslib + +
+ +* Version: 0.1 +* Source code: https://github.com/cran/aslib +* URL: https://github.com/coseal/aslib-r/ +* BugReports: https://github.com/coseal/aslib-r/issues +* Date/Publication: 2016-11-25 08:42:53 +* Number of recursive dependencies: 66 + +Run `revdep_details(,"aslib")` for more info + +
+ +## In both + +* checking whether package ‘aslib’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/aslib/new/aslib.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘aslib’ ... +** package ‘aslib’ successfully unpacked and MD5 sums checked +** R +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/aslib/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/aslib/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/aslib/rJava/libs/rJava.so + Reason: image not found +ERROR: lazy loading failed for package ‘aslib’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/aslib/new/aslib.Rcheck/aslib’ + +``` +### CRAN + +``` +* installing *source* package ‘aslib’ ... +** package ‘aslib’ successfully unpacked and MD5 sums checked +** R +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/aslib/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/aslib/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/aslib/rJava/libs/rJava.so + Reason: image not found +ERROR: lazy loading failed for package ‘aslib’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/aslib/old/aslib.Rcheck/aslib’ + +``` +# BaalChIP + +
+ +* Version: 1.8.0 +* Source code: https://github.com/cran/BaalChIP +* Date/Publication: 2018-10-30 +* Number of recursive dependencies: 83 + +Run `revdep_details(,"BaalChIP")` for more info + +
+ +## In both + +* R CMD check timed out + + +* checking installed package size ... NOTE + ``` + installed size is 200.0Mb + sub-directories of 1Mb or more: + data 96.1Mb + doc 1.6Mb + test 101.9Mb + ``` + +* checking R code for possible problems ... NOTE + ``` + applyBayes: no visible binding for global variable ‘SNP_id’ + plot.filt.barplot: no visible binding for global variable ‘cellname’ + plot.filt.barplot: no visible binding for global variable ‘value’ + plot.filt.barplot: no visible binding for global variable ‘variable’ + plot.filt.boxplot: no visible binding for global variable ‘variable’ + plot.filt.boxplot: no visible binding for global variable ‘value’ + plot.filt.boxplot: no visible binding for global variable ‘coltype’ + plot.filt.pie: no visible binding for global variable ‘variable’ + plot.filt.pie: no visible binding for global variable ‘value.mean’ + plot.simul: no visible binding for global variable ‘readslen’ + plot.simul: no visible binding for global variable ‘perc_right’ + plotadjustment: no visible binding for global variable ‘value’ + plotadjustment: no visible binding for global variable ‘variable’ + Undefined global functions or variables: + SNP_id cellname coltype perc_right readslen value value.mean variable + ``` + +# BACA + +
+ +* Version: 1.3 +* Source code: https://github.com/cran/BACA +* Date/Publication: 2015-05-27 08:55:17 +* Number of recursive dependencies: 71 + +Run `revdep_details(,"BACA")` for more info + +
+ +## In both + +* checking whether package ‘BACA’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/BACA/new/BACA.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘BACA’ ... +** package ‘BACA’ successfully unpacked and MD5 sums checked +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/BACA/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/BACA/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/BACA/rJava/libs/rJava.so + Reason: image not found +ERROR: lazy loading failed for package ‘BACA’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/BACA/new/BACA.Rcheck/BACA’ + +``` +### CRAN + +``` +* installing *source* package ‘BACA’ ... +** package ‘BACA’ successfully unpacked and MD5 sums checked +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/BACA/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/BACA/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/BACA/rJava/libs/rJava.so + Reason: image not found +ERROR: lazy loading failed for package ‘BACA’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/BACA/old/BACA.Rcheck/BACA’ + +``` +# BACCT + +
+ +* Version: 1.0 +* Source code: https://github.com/cran/BACCT +* Date/Publication: 2016-06-25 19:07:22 +* Number of recursive dependencies: 35 + +Run `revdep_details(,"BACCT")` for more info + +
+ +## In both + +* checking whether package ‘BACCT’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/BACCT/new/BACCT.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘BACCT’ ... +** package ‘BACCT’ successfully unpacked and MD5 sums checked +** R +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rjags', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/BACCT/rjags/libs/rjags.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/BACCT/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/BACCT/rjags/libs/rjags.so + Reason: image not found +ERROR: lazy loading failed for package ‘BACCT’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/BACCT/new/BACCT.Rcheck/BACCT’ + +``` +### CRAN + +``` +* installing *source* package ‘BACCT’ ... +** package ‘BACCT’ successfully unpacked and MD5 sums checked +** R +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rjags', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/BACCT/rjags/libs/rjags.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/BACCT/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/BACCT/rjags/libs/rjags.so + Reason: image not found +ERROR: lazy loading failed for package ‘BACCT’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/BACCT/old/BACCT.Rcheck/BACCT’ + +``` +# bamdit + +
+ +* Version: 3.2.1 +* Source code: https://github.com/cran/bamdit +* Date/Publication: 2018-09-17 15:00:03 UTC +* Number of recursive dependencies: 56 + +Run `revdep_details(,"bamdit")` for more info + +
+ +## In both + +* checking whether package ‘bamdit’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/bamdit/new/bamdit.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘bamdit’ ... +** package ‘bamdit’ successfully unpacked and MD5 sums checked +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rjags', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/bamdit/rjags/libs/rjags.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/bamdit/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/bamdit/rjags/libs/rjags.so + Reason: image not found +ERROR: lazy loading failed for package ‘bamdit’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/bamdit/new/bamdit.Rcheck/bamdit’ + +``` +### CRAN + +``` +* installing *source* package ‘bamdit’ ... +** package ‘bamdit’ successfully unpacked and MD5 sums checked +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rjags', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/bamdit/rjags/libs/rjags.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/bamdit/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/bamdit/rjags/libs/rjags.so + Reason: image not found +ERROR: lazy loading failed for package ‘bamdit’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/bamdit/old/bamdit.Rcheck/bamdit’ + +``` +# BayesRS + +
+ +* Version: 0.1.3 +* Source code: https://github.com/cran/BayesRS +* Date/Publication: 2018-04-06 06:39:35 UTC +* Number of recursive dependencies: 47 + +Run `revdep_details(,"BayesRS")` for more info + +
+ +## In both + +* checking whether package ‘BayesRS’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/BayesRS/new/BayesRS.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘BayesRS’ ... +** package ‘BayesRS’ successfully unpacked and MD5 sums checked +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rjags', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/BayesRS/rjags/libs/rjags.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/BayesRS/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/BayesRS/rjags/libs/rjags.so + Reason: image not found +ERROR: lazy loading failed for package ‘BayesRS’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/BayesRS/new/BayesRS.Rcheck/BayesRS’ + +``` +### CRAN + +``` +* installing *source* package ‘BayesRS’ ... +** package ‘BayesRS’ successfully unpacked and MD5 sums checked +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rjags', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/BayesRS/rjags/libs/rjags.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/BayesRS/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/BayesRS/rjags/libs/rjags.so + Reason: image not found +ERROR: lazy loading failed for package ‘BayesRS’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/BayesRS/old/BayesRS.Rcheck/BayesRS’ + +``` +# BNSP + +
+ +* Version: 2.0.8 +* Source code: https://github.com/cran/BNSP +* URL: http://www.bbk.ac.uk/ems/faculty/papageorgiou/BNSP +* Date/Publication: 2018-09-27 09:10:03 UTC +* Number of recursive dependencies: 62 + +Run `revdep_details(,"BNSP")` for more info + +
+ +## In both + +* checking whether package ‘BNSP’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/BNSP/new/BNSP.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘BNSP’ ... +** package ‘BNSP’ successfully unpacked and MD5 sums checked +** libs +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/BNSP/cubature/include" -I/usr/local/include -fPIC -Wall -g -O2 -c BNSP_init.c -o BNSP_init.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/BNSP/cubature/include" -I/usr/local/include -fPIC -Wall -g -O2 -c OneResLtnt.c -o OneResLtnt.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/BNSP/cubature/include" -I/usr/local/include -fPIC -Wall -g -O2 -c mvrmGAM.c -o mvrmGAM.o +mvrmGAM.c:26:10: fatal error: 'gsl/gsl_matrix.h' file not found +#include + ^~~~~~~~~~~~~~~~~~ +OneResLtnt.c:29:10: fatal error: 'gsl/gsl_matrix.h' file not found +#include + ^~~~~~~~~~~~~~~~~~ +1 error generated. +make: *** [mvrmGAM.o] Error 1 +make: *** Waiting for unfinished jobs.... +1 error generated. +make: *** [OneResLtnt.o] Error 1 +ERROR: compilation failed for package ‘BNSP’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/BNSP/new/BNSP.Rcheck/BNSP’ + +``` +### CRAN + +``` +* installing *source* package ‘BNSP’ ... +** package ‘BNSP’ successfully unpacked and MD5 sums checked +** libs +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/BNSP/cubature/include" -I/usr/local/include -fPIC -Wall -g -O2 -c BNSP_init.c -o BNSP_init.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/BNSP/cubature/include" -I/usr/local/include -fPIC -Wall -g -O2 -c OneResLtnt.c -o OneResLtnt.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/BNSP/cubature/include" -I/usr/local/include -fPIC -Wall -g -O2 -c mvrmGAM.c -o mvrmGAM.o +mvrmGAM.c:26:10: fatal error: 'gsl/gsl_matrix.h' file not found +#include + ^~~~~~~~~~~~~~~~~~ +OneResLtnt.c:29:10: fatal error: 'gsl/gsl_matrix.h' file not found +#include + ^~~~~~~~~~~~~~~~~~ +1 error generated. +make: *** [mvrmGAM.o] Error 1 +make: *** Waiting for unfinished jobs.... +1 error generated. +make: *** [OneResLtnt.o] Error 1 +ERROR: compilation failed for package ‘BNSP’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/BNSP/old/BNSP.Rcheck/BNSP’ + +``` +# BPEC + +
+ +* Version: 1.3.0 +* Source code: https://github.com/cran/BPEC +* Date/Publication: 2018-08-29 20:56:48 UTC +* Number of recursive dependencies: 80 + +Run `revdep_details(,"BPEC")` for more info + +
+ +## In both + +* checking whether package ‘BPEC’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/BPEC/new/BPEC.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘BPEC’ ... +** package ‘BPEC’ successfully unpacked and MD5 sums checked +** libs +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c bpecfunction.c -o bpecfunction.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c hashingfunctions.c -o hashingfunctions.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c loopfunctions.c -o loopfunctions.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c matrices.c -o matrices.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c randomnumbers.c -o randomnumbers.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c registerDynamicSymbol.c -o registerDynamicSymbol.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c treelikelifunctions.c -o treelikelifunctions.o +clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o BPEC.so bpecfunction.o hashingfunctions.o loopfunctions.o matrices.o randomnumbers.o registerDynamicSymbol.o treelikelifunctions.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation +ld: warning: text-based stub file /System/Library/Frameworks//CoreFoundation.framework/CoreFoundation.tbd and library file /System/Library/Frameworks//CoreFoundation.framework/CoreFoundation are out of sync. Falling back to library file for linking. +installing to /Users/max/github/forks/ggplot2/revdep/checks.noindex/BPEC/new/BPEC.Rcheck/BPEC/libs +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/BPEC/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/BPEC/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/BPEC/rJava/libs/rJava.so + Reason: image not found +ERROR: lazy loading failed for package ‘BPEC’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/BPEC/new/BPEC.Rcheck/BPEC’ + +``` +### CRAN + +``` +* installing *source* package ‘BPEC’ ... +** package ‘BPEC’ successfully unpacked and MD5 sums checked +** libs +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c bpecfunction.c -o bpecfunction.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c hashingfunctions.c -o hashingfunctions.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c loopfunctions.c -o loopfunctions.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c matrices.c -o matrices.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c randomnumbers.c -o randomnumbers.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c registerDynamicSymbol.c -o registerDynamicSymbol.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c treelikelifunctions.c -o treelikelifunctions.o +clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o BPEC.so bpecfunction.o hashingfunctions.o loopfunctions.o matrices.o randomnumbers.o registerDynamicSymbol.o treelikelifunctions.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation +ld: warning: text-based stub file /System/Library/Frameworks//CoreFoundation.framework/CoreFoundation.tbd and library file /System/Library/Frameworks//CoreFoundation.framework/CoreFoundation are out of sync. Falling back to library file for linking. +installing to /Users/max/github/forks/ggplot2/revdep/checks.noindex/BPEC/old/BPEC.Rcheck/BPEC/libs +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/BPEC/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/BPEC/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/BPEC/rJava/libs/rJava.so + Reason: image not found +ERROR: lazy loading failed for package ‘BPEC’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/BPEC/old/BPEC.Rcheck/BPEC’ + +``` +# bsam + +
+ +* Version: 1.1.2 +* Source code: https://github.com/cran/bsam +* URL: https://github.com/ianjonsen/bsam +* BugReports: https://github.com/ianjonsen/bsam/issues +* Date/Publication: 2017-07-01 02:50:50 UTC +* Number of recursive dependencies: 48 + +Run `revdep_details(,"bsam")` for more info + +
+ +## In both + +* checking whether package ‘bsam’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/bsam/new/bsam.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘bsam’ ... +** package ‘bsam’ successfully unpacked and MD5 sums checked +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘rjags’: + .onLoad failed in loadNamespace() for 'rjags', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/bsam/rjags/libs/rjags.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/bsam/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/bsam/rjags/libs/rjags.so + Reason: image not found +Error : package ‘rjags’ could not be loaded +ERROR: lazy loading failed for package ‘bsam’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/bsam/new/bsam.Rcheck/bsam’ + +``` +### CRAN + +``` +* installing *source* package ‘bsam’ ... +** package ‘bsam’ successfully unpacked and MD5 sums checked +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘rjags’: + .onLoad failed in loadNamespace() for 'rjags', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/bsam/rjags/libs/rjags.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/bsam/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/bsam/rjags/libs/rjags.so + Reason: image not found +Error : package ‘rjags’ could not be loaded +ERROR: lazy loading failed for package ‘bsam’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/bsam/old/bsam.Rcheck/bsam’ + +``` +# BTSPAS + +
+ +* Version: 2014.0901 +* Source code: https://github.com/cran/BTSPAS +* URL: http://www.stat.sfu.ca/~cschwarz/Consulting/Trinity/Phase2 +* Date/Publication: 2014-08-26 07:51:36 +* Number of recursive dependencies: 40 + +Run `revdep_details(,"BTSPAS")` for more info + +
+ +## In both + +* checking whether package ‘BTSPAS’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/BTSPAS/new/BTSPAS.Rcheck/00install.out’ for details. + ``` + +* checking package dependencies ... NOTE + ``` + Package suggested but not available for checking: ‘BRugs’ + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘BTSPAS’ ... +** package ‘BTSPAS’ successfully unpacked and MD5 sums checked +** R +** demo +** inst +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rjags', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/BTSPAS/rjags/libs/rjags.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/BTSPAS/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/BTSPAS/rjags/libs/rjags.so + Reason: image not found +ERROR: lazy loading failed for package ‘BTSPAS’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/BTSPAS/new/BTSPAS.Rcheck/BTSPAS’ + +``` +### CRAN + +``` +* installing *source* package ‘BTSPAS’ ... +** package ‘BTSPAS’ successfully unpacked and MD5 sums checked +** R +** demo +** inst +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rjags', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/BTSPAS/rjags/libs/rjags.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/BTSPAS/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/BTSPAS/rjags/libs/rjags.so + Reason: image not found +ERROR: lazy loading failed for package ‘BTSPAS’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/BTSPAS/old/BTSPAS.Rcheck/BTSPAS’ + +``` +# CaliCo + +
+ +* Version: 0.1.1 +* Source code: https://github.com/cran/CaliCo +* Date/Publication: 2018-07-24 09:00:20 UTC +* Number of recursive dependencies: 51 + +Run `revdep_details(,"CaliCo")` for more info + +
+ +## In both + +* checking whether package ‘CaliCo’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/CaliCo/new/CaliCo.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘CaliCo’ ... +** package ‘CaliCo’ successfully unpacked and MD5 sums checked +** libs +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/CaliCo/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/CaliCo/RcppArmadillo/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/CaliCo/Matrix/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c MCMC.cpp -o MCMC.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/CaliCo/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/CaliCo/RcppArmadillo/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/CaliCo/Matrix/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o +clang: error: unsupported option '-fopenmp' +clang: error: unsupported option '-fopenmp' +make: *** [RcppExports.o] Error 1 +make: *** Waiting for unfinished jobs.... +make: *** [MCMC.o] Error 1 +ERROR: compilation failed for package ‘CaliCo’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/CaliCo/new/CaliCo.Rcheck/CaliCo’ + +``` +### CRAN + +``` +* installing *source* package ‘CaliCo’ ... +** package ‘CaliCo’ successfully unpacked and MD5 sums checked +** libs +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/CaliCo/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/CaliCo/RcppArmadillo/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/CaliCo/Matrix/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c MCMC.cpp -o MCMC.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/CaliCo/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/CaliCo/RcppArmadillo/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/CaliCo/Matrix/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o +clang: error: unsupported option '-fopenmp'clang +: error: unsupported option '-fopenmp' +make: *** [RcppExports.o] Error 1 +make: *** Waiting for unfinished jobs.... +make: *** [MCMC.o] Error 1 +ERROR: compilation failed for package ‘CaliCo’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/CaliCo/old/CaliCo.Rcheck/CaliCo’ + +``` +# ChIPseeker + +
+ +* Version: +* Source code: ??? +* URL: http://ggplot2.tidyverse.org, https://github.com/tidyverse/ggplot2 +* BugReports: https://github.com/tidyverse/ggplot2/issues +* Number of recursive dependencies: 0 + +Run `revdep_details(,"")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + +installing the source packages ‘GO.db’, ‘org.Hs.eg.db’, ‘reactome.db’, ‘TxDb.Hsapiens.UCSC.hg19.knownGene’ + + + +``` +### CRAN + +``` + + + +installing the source packages ‘GO.db’, ‘org.Hs.eg.db’, ‘reactome.db’, ‘TxDb.Hsapiens.UCSC.hg19.knownGene’ + + + +``` +# chromstaR + +
+ +* Version: 1.8.1 +* Source code: https://github.com/cran/chromstaR +* URL: https://github.com/ataudt/chromstaR +* BugReports: https://github.com/ataudt/chromstaR/issues +* Date/Publication: 2019-01-04 +* Number of recursive dependencies: 100 + +Run `revdep_details(,"chromstaR")` for more info + +
+ +## In both + +* checking whether package ‘chromstaR’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/chromstaR/new/chromstaR.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘chromstaR’ ... +** libs +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c R_interface.cpp -o R_interface.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c densities.cpp -o densities.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c init.cpp -o init.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c scalehmm.cpp -o scalehmm.o +clang: error: unsupported option '-fopenmp'clang: error: unsupported option '-fopenmp' +clang: error: unsupported option '-fopenmp'clang: error: unsupported option '-fopenmp' + + +make: *** [R_interface.o] Error 1 +make: *** Waiting for unfinished jobs.... +make: *** [scalehmm.o] Error 1 +make: *** [init.o] Error 1 +make: *** [densities.o] Error 1 +ERROR: compilation failed for package ‘chromstaR’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/chromstaR/new/chromstaR.Rcheck/chromstaR’ + +``` +### CRAN + +``` +* installing *source* package ‘chromstaR’ ... +** libs +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c R_interface.cpp -o R_interface.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c densities.cpp -o densities.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c init.cpp -o init.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c scalehmm.cpp -o scalehmm.o +clang: error: unsupported option '-fopenmp' +clang: error: unsupported option '-fopenmp' +clang: error: unsupported option '-fopenmp' +make: *** [densities.o] Error 1 +make: *** Waiting for unfinished jobs.... +make: *** [R_interface.o] Error 1 +make: *** [init.o] Error 1 +clang: error: unsupported option '-fopenmp' +make: *** [scalehmm.o] Error 1 +ERROR: compilation failed for package ‘chromstaR’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/chromstaR/old/chromstaR.Rcheck/chromstaR’ + +``` +# clusterProfiler + +
+ +* Version: +* Source code: ??? +* URL: http://ggplot2.tidyverse.org, https://github.com/tidyverse/ggplot2 +* BugReports: https://github.com/tidyverse/ggplot2/issues +* Number of recursive dependencies: 0 + +Run `revdep_details(,"")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + +installing the source packages ‘GO.db’, ‘org.Hs.eg.db’, ‘reactome.db’ + + + +``` +### CRAN + +``` + + + +installing the source packages ‘GO.db’, ‘org.Hs.eg.db’, ‘reactome.db’ + + + +``` +# CNVrd2 + +
+ +* Version: 1.20.0 +* Source code: https://github.com/cran/CNVrd2 +* URL: https://github.com/hoangtn/CNVrd2 +* Date/Publication: 2018-10-30 +* Number of recursive dependencies: 91 + +Run `revdep_details(,"CNVrd2")` for more info + +
+ +## In both + +* checking whether package ‘CNVrd2’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/CNVrd2/new/CNVrd2.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘CNVrd2’ ... +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘rjags’: + .onLoad failed in loadNamespace() for 'rjags', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/CNVrd2/rjags/libs/rjags.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/CNVrd2/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/CNVrd2/rjags/libs/rjags.so + Reason: image not found +Error : package ‘rjags’ could not be loaded +ERROR: lazy loading failed for package ‘CNVrd2’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/CNVrd2/new/CNVrd2.Rcheck/CNVrd2’ + +``` +### CRAN + +``` +* installing *source* package ‘CNVrd2’ ... +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘rjags’: + .onLoad failed in loadNamespace() for 'rjags', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/CNVrd2/rjags/libs/rjags.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/CNVrd2/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/CNVrd2/rjags/libs/rjags.so + Reason: image not found +Error : package ‘rjags’ could not be loaded +ERROR: lazy loading failed for package ‘CNVrd2’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/CNVrd2/old/CNVrd2.Rcheck/CNVrd2’ + +``` +# CollapsABEL + +
+ +* Version: 0.10.11 +* Source code: https://github.com/cran/CollapsABEL +* URL: https://bitbucket.org/kindlychung/collapsabel2/overview +* BugReports: https://bitbucket.org/kindlychung/collapsabel2/issues +* Date/Publication: 2016-12-11 20:35:07 +* Number of recursive dependencies: 97 + +Run `revdep_details(,"CollapsABEL")` for more info + +
+ +## In both + +* checking whether package ‘CollapsABEL’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/CollapsABEL/new/CollapsABEL.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘CollapsABEL’ ... +** package ‘CollapsABEL’ successfully unpacked and MD5 sums checked +** R +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘rJava’: + .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/CollapsABEL/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/CollapsABEL/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/CollapsABEL/rJava/libs/rJava.so + Reason: image not found +Error : package ‘rJava’ could not be loaded +ERROR: lazy loading failed for package ‘CollapsABEL’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/CollapsABEL/new/CollapsABEL.Rcheck/CollapsABEL’ + +``` +### CRAN + +``` +* installing *source* package ‘CollapsABEL’ ... +** package ‘CollapsABEL’ successfully unpacked and MD5 sums checked +** R +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘rJava’: + .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/CollapsABEL/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/CollapsABEL/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/CollapsABEL/rJava/libs/rJava.so + Reason: image not found +Error : package ‘rJava’ could not be loaded +ERROR: lazy loading failed for package ‘CollapsABEL’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/CollapsABEL/old/CollapsABEL.Rcheck/CollapsABEL’ + +``` +# colorednoise + +
+ +* Version: 1.0.4 +* Source code: https://github.com/cran/colorednoise +* BugReports: http://github.com/japilo/colorednoise/issues +* Date/Publication: 2019-01-23 12:50:14 UTC +* Number of recursive dependencies: 85 + +Run `revdep_details(,"colorednoise")` for more info + +
+ +## In both + +* checking whether package ‘colorednoise’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/colorednoise/new/colorednoise.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘colorednoise’ ... +** package ‘colorednoise’ successfully unpacked and MD5 sums checked +** libs +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/colorednoise/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/colorednoise/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/colorednoise/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/colorednoise/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c noise.cpp -o noise.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/colorednoise/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/colorednoise/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c simulation.cpp -o simulation.o +clang: error: unsupported option '-fopenmp' +clang: error: unsupported option '-fopenmp' +clang: error: unsupported option '-fopenmp' +make: *** [RcppExports.o] Error 1 +make: *** Waiting for unfinished jobs.... +make: *** [simulation.o] Error 1 +make: *** [noise.o] Error 1 +ERROR: compilation failed for package ‘colorednoise’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/colorednoise/new/colorednoise.Rcheck/colorednoise’ + +``` +### CRAN + +``` +* installing *source* package ‘colorednoise’ ... +** package ‘colorednoise’ successfully unpacked and MD5 sums checked +** libs +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/colorednoise/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/colorednoise/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/colorednoise/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/colorednoise/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c noise.cpp -o noise.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/colorednoise/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/colorednoise/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c simulation.cpp -o simulation.o +clang: error: unsupported option '-fopenmp'clang: error: clang: error: unsupported option '-fopenmp'unsupported option '-fopenmp' + + +make: *** [simulation.o] Error 1 +make: *** Waiting for unfinished jobs.... +make: *** [noise.o] Error 1 +make: *** [RcppExports.o] Error 1 +ERROR: compilation failed for package ‘colorednoise’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/colorednoise/old/colorednoise.Rcheck/colorednoise’ + +``` +# crmPack + +
+ +* Version: 0.2.9 +* Source code: https://github.com/cran/crmPack +* URL: https://github.com/roche/crmPack +* BugReports: https://github.com/roche/crmPack/issues +* Date/Publication: 2018-12-21 14:30:09 UTC +* Number of recursive dependencies: 58 + +Run `revdep_details(,"crmPack")` for more info + +
+ +## In both + +* checking whether package ‘crmPack’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/crmPack/new/crmPack.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘crmPack’ ... +** package ‘crmPack’ successfully unpacked and MD5 sums checked +** R +** inst +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rjags', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/crmPack/rjags/libs/rjags.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/crmPack/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/crmPack/rjags/libs/rjags.so + Reason: image not found +ERROR: lazy loading failed for package ‘crmPack’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/crmPack/new/crmPack.Rcheck/crmPack’ + +``` +### CRAN + +``` +* installing *source* package ‘crmPack’ ... +** package ‘crmPack’ successfully unpacked and MD5 sums checked +** R +** inst +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rjags', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/crmPack/rjags/libs/rjags.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/crmPack/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/crmPack/rjags/libs/rjags.so + Reason: image not found +ERROR: lazy loading failed for package ‘crmPack’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/crmPack/old/crmPack.Rcheck/crmPack’ + +``` +# Crossover + +
+ +* Version: 0.1-17 +* Source code: https://github.com/cran/Crossover +* URL: https://github.com/kornl/Crossover/wiki +* BugReports: https://github.com/kornl/Crossover/issues +* Date/Publication: 2017-11-10 23:13:30 UTC +* Number of recursive dependencies: 57 + +Run `revdep_details(,"Crossover")` for more info + +
+ +## In both + +* checking whether package ‘Crossover’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/Crossover/new/Crossover.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘Crossover’ ... +** package ‘Crossover’ successfully unpacked and MD5 sums checked +** libs +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/Crossover/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/Crossover/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c Crossover_init.c -o Crossover_init.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/Crossover/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/Crossover/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c searchCOD.cpp -o searchCOD.o +searchCOD.cpp:122:11: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] + pinv(trans(X) * cor * X); + ^~~~ +1 warning generated. +clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o Crossover.so Crossover_init.o searchCOD.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation +ld: warning: text-based stub file /System/Library/Frameworks//CoreFoundation.framework/CoreFoundation.tbd and library file /System/Library/Frameworks//CoreFoundation.framework/CoreFoundation are out of sync. Falling back to library file for linking. +installing to /Users/max/github/forks/ggplot2/revdep/checks.noindex/Crossover/new/Crossover.Rcheck/Crossover/libs +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘rJava’: + .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/Crossover/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/Crossover/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/Crossover/rJava/libs/rJava.so + Reason: image not found +Error : package ‘rJava’ could not be loaded +ERROR: lazy loading failed for package ‘Crossover’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/Crossover/new/Crossover.Rcheck/Crossover’ + +``` +### CRAN + +``` +* installing *source* package ‘Crossover’ ... +** package ‘Crossover’ successfully unpacked and MD5 sums checked +** libs +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/Crossover/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/Crossover/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c Crossover_init.c -o Crossover_init.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/Crossover/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/Crossover/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c searchCOD.cpp -o searchCOD.o +searchCOD.cpp:122:11: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] + pinv(trans(X) * cor * X); + ^~~~ +1 warning generated. +clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o Crossover.so Crossover_init.o searchCOD.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation +ld: warning: text-based stub file /System/Library/Frameworks//CoreFoundation.framework/CoreFoundation.tbd and library file /System/Library/Frameworks//CoreFoundation.framework/CoreFoundation are out of sync. Falling back to library file for linking. +installing to /Users/max/github/forks/ggplot2/revdep/checks.noindex/Crossover/old/Crossover.Rcheck/Crossover/libs +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘rJava’: + .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/Crossover/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/Crossover/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/Crossover/rJava/libs/rJava.so + Reason: image not found +Error : package ‘rJava’ could not be loaded +ERROR: lazy loading failed for package ‘Crossover’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/Crossover/old/Crossover.Rcheck/Crossover’ + +``` +# DaMiRseq + +
+ +* Version: 1.6.2 +* Source code: https://github.com/cran/DaMiRseq +* Date/Publication: 2019-01-16 +* Number of recursive dependencies: 201 + +Run `revdep_details(,"DaMiRseq")` for more info + +
+ +## In both + +* checking whether package ‘DaMiRseq’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/DaMiRseq/new/DaMiRseq.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘DaMiRseq’ ... +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/DaMiRseq/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/DaMiRseq/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/DaMiRseq/rJava/libs/rJava.so + Reason: image not found +ERROR: lazy loading failed for package ‘DaMiRseq’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/DaMiRseq/new/DaMiRseq.Rcheck/DaMiRseq’ + +``` +### CRAN + +``` +* installing *source* package ‘DaMiRseq’ ... +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/DaMiRseq/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/DaMiRseq/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/DaMiRseq/rJava/libs/rJava.so + Reason: image not found +ERROR: lazy loading failed for package ‘DaMiRseq’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/DaMiRseq/old/DaMiRseq.Rcheck/DaMiRseq’ + +``` +# Deducer + +
+ +* Version: 0.7-9 +* Source code: https://github.com/cran/Deducer +* URL: http://www.deducer.org/manual.html http://www.fellstat.com +* Date/Publication: 2015-12-29 22:16:31 +* Number of recursive dependencies: 115 + +Run `revdep_details(,"Deducer")` for more info + +
+ +## In both + +* checking whether package ‘Deducer’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/Deducer/new/Deducer.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘Deducer’ ... +** package ‘Deducer’ successfully unpacked and MD5 sums checked +** R +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘rJava’: + .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/Deducer/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/Deducer/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/Deducer/rJava/libs/rJava.so + Reason: image not found +Error : package ‘rJava’ could not be loaded +ERROR: lazy loading failed for package ‘Deducer’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/Deducer/new/Deducer.Rcheck/Deducer’ + +``` +### CRAN + +``` +* installing *source* package ‘Deducer’ ... +** package ‘Deducer’ successfully unpacked and MD5 sums checked +** R +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘rJava’: + .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/Deducer/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/Deducer/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/Deducer/rJava/libs/rJava.so + Reason: image not found +Error : package ‘rJava’ could not be loaded +ERROR: lazy loading failed for package ‘Deducer’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/Deducer/old/Deducer.Rcheck/Deducer’ + +``` +# DeLorean + +
+ +* Version: 1.5.0 +* Source code: https://github.com/cran/DeLorean +* Date/Publication: 2018-10-17 22:30:16 UTC +* Number of recursive dependencies: 124 + +Run `revdep_details(,"DeLorean")` for more info + +
+ +## In both + +* checking whether package ‘DeLorean’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/DeLorean/new/DeLorean.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘DeLorean’ ... +** package ‘DeLorean’ successfully unpacked and MD5 sums checked +** libs +"/Library/Frameworks/R.framework/Resources/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/exact.stan +"/Library/Frameworks/R.framework/Resources/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/exactsizes.stan +"/Library/Frameworks/R.framework/Resources/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/lowrank.stan +"/Library/Frameworks/R.framework/Resources/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/lowranksizes.stan +Wrote C++ file "stan_files/exact.cc" +Wrote C++ file "stan_files/exactsizes.cc" +Wrote C++ file "stan_files/lowranksizes.cc" +Wrote C++ file "stan_files/lowrank.cc" +Error in readRDS("/var/folders/lb/xhxqmcrd7gv302_b1pdfykh80000gn/T//RtmpNeTeBk/file30e5b7818fb") : + error reading from connection +Calls: .Last -> readRDS +Execution halted +/usr/local/clang6/bin/clang++ -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"`"/Library/Frameworks/R.framework/Resources/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/BH/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include" -I/usr/local/include -fPIC -Wall -g -O2 -c init.cpp -o init.o +make: *** [stan_files/exactsizes.cc] Error 1 +make: *** Waiting for unfinished jobs.... +rm stan_files/exact.cc stan_files/exactsizes.cc stan_files/lowranksizes.cc stan_files/lowrank.cc +ERROR: compilation failed for package ‘DeLorean’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/DeLorean/new/DeLorean.Rcheck/DeLorean’ + +``` +### CRAN + +``` +* installing *source* package ‘DeLorean’ ... +** package ‘DeLorean’ successfully unpacked and MD5 sums checked +** libs +"/Library/Frameworks/R.framework/Resources/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/exact.stan +"/Library/Frameworks/R.framework/Resources/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/exactsizes.stan +"/Library/Frameworks/R.framework/Resources/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/lowrank.stan +"/Library/Frameworks/R.framework/Resources/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/lowranksizes.stan +Wrote C++ file "stan_files/exact.cc" +Wrote C++ file "stan_files/exactsizes.cc" +Wrote C++ file "stan_files/lowranksizes.cc" +Wrote C++ file "stan_files/lowrank.cc" +Error in readRDS("/var/folders/lb/xhxqmcrd7gv302_b1pdfykh80000gn/T//RtmpNeTeBk/file30e5da652be") : + error reading from connection +Calls: .Last -> readRDS +Execution halted +/usr/local/clang6/bin/clang++ -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"`"/Library/Frameworks/R.framework/Resources/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/BH/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include" -I/usr/local/include -fPIC -Wall -g -O2 -c init.cpp -o init.o +/usr/local/clang6/bin/clang++ -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"`"/Library/Frameworks/R.framework/Resources/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/BH/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include" -I/usr/local/include -fPIC -Wall -g -O2 -c stan_files/exact.cc -o stan_files/exact.o +/usr/local/clang6/bin/clang++ -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"`"/Library/Frameworks/R.framework/Resources/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/BH/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include" -I/usr/local/include -fPIC -Wall -g -O2 -c stan_files/lowrank.cc -o stan_files/lowrank.o +make: *** [stan_files/exactsizes.cc] Error 1 +make: *** Waiting for unfinished jobs.... +In file included from stan_files/exact.cc:3: +In file included from stan_files/exact.hpp:25: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/stan_fit.hpp:15: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/BH/include/boost/random/additive_combine.hpp:27: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/BH/include/boost/random/linear_congruential.hpp:30: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/BH/include/boost/random/detail/const_mod.hpp:23: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/BH/include/boost/random/detail/large_arithmetic.hpp:19: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/BH/include/boost/random/detail/integer_log2.hpp:19: +/Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/BH/include/boost/pending/integer_log2.hpp:7:1: warning: This header is deprecated. Use instead. [-W#pragma-messages] +BOOST_HEADER_DEPRECATED(""); +^ +/Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED' +# define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.") + ^ +/Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' +# define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) + ^ +:32:2: note: expanded from here + message("This header is deprecated. Use " "" " instead.") + ^ +In file included from stan_files/lowrank.cc:3: +In file included from stan_files/lowrank.hpp:25: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/stan_fit.hpp:15: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/BH/include/boost/random/additive_combine.hpp:27: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/BH/include/boost/random/linear_congruential.hpp:30: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/BH/include/boost/random/detail/const_mod.hpp:23: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/BH/include/boost/random/detail/large_arithmetic.hpp:19: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/BH/include/boost/random/detail/integer_log2.hpp:19: +/Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/BH/include/boost/pending/integer_log2.hpp:7:1: warning: This header is deprecated. Use instead. [-W#pragma-messages] +BOOST_HEADER_DEPRECATED(""); +^ +/Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED' +# define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.") + ^ +/Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' +# define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) + ^ +:32:2: note: expanded from here + message("This header is deprecated. Use " "" " instead.") + ^ +In file included from stan_files/exact.cc:3: +In file included from stan_files/exact.hpp:25: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/Dense:1: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/Core:535: +/Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/lowrank.cc:3: +In file included from stan_files/lowrank.hpp:25: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/Dense:1: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/Core:535: +/Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/exact.cc:3: +In file included from stan_files/exact.hpp:25: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/Dense:2: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/LU:47: +/Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/exact.cc:3: +In file included from stan_files/exact.hpp:25: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/Dense:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/Cholesky:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/Jacobi:29: +/Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/exact.cc:3: +In file included from stan_files/exact.hpp:25: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/Dense:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/Cholesky:43: +/Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/exact.cc:3: +In file included from stan_files/exact.hpp:25: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/Dense:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/QR:17: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/Householder:27: +/Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/lowrank.cc:3: +In file included from stan_files/lowrank.hpp:25: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/Dense:2: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/LU:47: +/Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/lowrank.cc:3: +In file included from stan_files/lowrank.hpp:25: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/Dense:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/Cholesky:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/Jacobi:29: +/Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/lowrank.cc:3: +In file included from stan_files/lowrank.hpp:25: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/Dense:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/Cholesky:43: +/Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/lowrank.cc:3: +In file included from stan_files/lowrank.hpp:25: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/Dense:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/QR:17: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/Householder:27: +/Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/exact.cc:3: +In file included from stan_files/exact.hpp:25: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/Dense:5: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/SVD:48: +/Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/lowrank.cc:3: +In file included from stan_files/lowrank.hpp:25: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/Dense:5: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/SVD:48: +/Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/exact.cc:3: +In file included from stan_files/exact.hpp:25: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/Dense:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/Geometry:58: +/Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/exact.cc:3: +In file included from stan_files/exact.hpp:25: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/Dense:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/Eigenvalues:58: +/Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/lowrank.cc:3: +In file included from stan_files/lowrank.hpp:25: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/Dense:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/Geometry:58: +/Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/lowrank.cc:3: +In file included from stan_files/lowrank.hpp:25: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/Dense:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/Eigenvalues:58: +/Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/exact.cc:3: +In file included from stan_files/exact.hpp:25: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/Sparse:26: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/SparseCore:66: +/Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/exact.cc:3: +In file included from stan_files/exact.hpp:25: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/Sparse:27: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/OrderingMethods:71: +/Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/exact.cc:3: +In file included from stan_files/exact.hpp:25: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/Sparse:29: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/SparseCholesky:43: +/Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/exact.cc:3: +In file included from stan_files/exact.hpp:25: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/Sparse:32: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/SparseQR:35: +/Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/exact.cc:3: +In file included from stan_files/exact.hpp:25: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/Sparse:33: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/IterativeLinearSolvers:46: +/Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/lowrank.cc:3: +In file included from stan_files/lowrank.hpp:25: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/Sparse:26: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/SparseCore:66: +/Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/lowrank.cc:3: +In file included from stan_files/lowrank.hpp:25: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/Sparse:27: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/OrderingMethods:71: +/Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/lowrank.cc:3: +In file included from stan_files/lowrank.hpp:25: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/Sparse:29: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/SparseCholesky:43: +/Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/lowrank.cc:3: +In file included from stan_files/lowrank.hpp:25: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/Sparse:32: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/SparseQR:35: +/Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/lowrank.cc:3: +In file included from stan_files/lowrank.hpp:25: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/Sparse:33: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/IterativeLinearSolvers:46: +/Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/exact.cc:3: +In file included from stan_files/exact.hpp:25: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/core.hpp:44: +/Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints.hpp:14:13: warning: unused function 'set_zero_all_adjoints' [-Wunused-function] +static void set_zero_all_adjoints() { + ^ +In file included from stan_files/exact.cc:3: +In file included from stan_files/exact.hpp:25: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/prim/mat.hpp:70: +/Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/prim/mat/fun/autocorrelation.hpp:18:8: warning: function 'fft_next_good_size' is not needed and will not be emitted [-Wunneeded-internal-declaration] +size_t fft_next_good_size(size_t N) { + ^ +In file included from stan_files/exact.cc:3: +stan_files/exact.hpp:397:30: warning: unused typedef 'fun_return_scalar_t__' [-Wunused-local-typedef] + typedef local_scalar_t__ fun_return_scalar_t__; + ^ +In file included from stan_files/lowrank.cc:3: +In file included from stan_files/lowrank.hpp:25: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/core.hpp:44: +/Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints.hpp:14:13: warning: unused function 'set_zero_all_adjoints' [-Wunused-function] +static void set_zero_all_adjoints() { + ^ +In file included from stan_files/lowrank.cc:3: +In file included from stan_files/lowrank.hpp:25: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/prim/mat.hpp:70: +/Users/max/github/forks/ggplot2/revdep/library.noindex/DeLorean/StanHeaders/include/stan/math/prim/mat/fun/autocorrelation.hpp:18:8: warning: function 'fft_next_good_size' is not needed and will not be emitted [-Wunneeded-internal-declaration] +size_t fft_next_good_size(size_t N) { + ^ +In file included from stan_files/lowrank.cc:3: +stan_files/lowrank.hpp:495:30: warning: unused typedef 'fun_return_scalar_t__' [-Wunused-local-typedef] + typedef local_scalar_t__ fun_return_scalar_t__; + ^ +17 warnings generated. +17 warnings generated. +rm stan_files/exact.cc stan_files/exactsizes.cc stan_files/lowranksizes.cc stan_files/lowrank.cc +ERROR: compilation failed for package ‘DeLorean’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/DeLorean/old/DeLorean.Rcheck/DeLorean’ + +``` +# DiffBind + +
+ +* Version: 2.10.0 +* Source code: https://github.com/cran/DiffBind +* Date/Publication: 2018-10-30 +* Number of recursive dependencies: 150 + +Run `revdep_details(,"DiffBind")` for more info + +
+ +## In both + +* R CMD check timed out + + +* checking package dependencies ... NOTE + ``` + Package which this enhances but not available for checking: ‘XLConnect’ + ``` + +* checking R code for possible problems ... NOTE + ``` + pv.DBAplotVolcano: no visible binding for global variable ‘Fold’ + pv.DBAplotVolcano: no visible binding for global variable ‘Legend’ + Undefined global functions or variables: + Fold Legend + ``` + +# DiversityOccupancy + +
+ +* Version: 1.0.6 +* Source code: https://github.com/cran/DiversityOccupancy +* Date/Publication: 2017-03-02 18:32:36 +* Number of recursive dependencies: 81 + +Run `revdep_details(,"DiversityOccupancy")` for more info + +
+ +## In both + +* checking whether package ‘DiversityOccupancy’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/DiversityOccupancy/new/DiversityOccupancy.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘DiversityOccupancy’ ... +** package ‘DiversityOccupancy’ successfully unpacked and MD5 sums checked +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/DiversityOccupancy/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/DiversityOccupancy/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/DiversityOccupancy/rJava/libs/rJava.so + Reason: image not found +ERROR: lazy loading failed for package ‘DiversityOccupancy’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/DiversityOccupancy/new/DiversityOccupancy.Rcheck/DiversityOccupancy’ + +``` +### CRAN + +``` +* installing *source* package ‘DiversityOccupancy’ ... +** package ‘DiversityOccupancy’ successfully unpacked and MD5 sums checked +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/DiversityOccupancy/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/DiversityOccupancy/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/DiversityOccupancy/rJava/libs/rJava.so + Reason: image not found +ERROR: lazy loading failed for package ‘DiversityOccupancy’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/DiversityOccupancy/old/DiversityOccupancy.Rcheck/DiversityOccupancy’ + +``` +# dynfrail + +
+ +* Version: 0.5.2 +* Source code: https://github.com/cran/dynfrail +* Date/Publication: 2017-10-30 10:11:49 UTC +* Number of recursive dependencies: 58 + +Run `revdep_details(,"dynfrail")` for more info + +
+ +## In both + +* checking whether package ‘dynfrail’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/dynfrail/new/dynfrail.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘dynfrail’ ... +** package ‘dynfrail’ successfully unpacked and MD5 sums checked +** libs +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/dynfrail/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/dynfrail/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/dynfrail/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/dynfrail/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c estep_new.cpp -o estep_new.o +clang: error: unsupported option '-fopenmp' +make: *** [RcppExports.o] Error 1 +make: *** Waiting for unfinished jobs.... +clang: error: unsupported option '-fopenmp' +make: *** [estep_new.o] Error 1 +ERROR: compilation failed for package ‘dynfrail’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/dynfrail/new/dynfrail.Rcheck/dynfrail’ + +``` +### CRAN + +``` +* installing *source* package ‘dynfrail’ ... +** package ‘dynfrail’ successfully unpacked and MD5 sums checked +** libs +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/dynfrail/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/dynfrail/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/dynfrail/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/dynfrail/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c estep_new.cpp -o estep_new.o +clang: error: unsupported option '-fopenmp' +clang: error: unsupported option '-fopenmp' +make: *** [estep_new.o] Error 1 +make: *** Waiting for unfinished jobs.... +make: *** [RcppExports.o] Error 1 +ERROR: compilation failed for package ‘dynfrail’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/dynfrail/old/dynfrail.Rcheck/dynfrail’ + +``` +# dynr + +
+ +* Version: 0.1.14-9 +* Source code: https://github.com/cran/dynr +* Date/Publication: 2019-04-02 07:50:03 UTC +* Number of recursive dependencies: 95 + +Run `revdep_details(,"dynr")` for more info + +
+ +## In both + +* checking whether package ‘dynr’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/dynr/new/dynr.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘dynr’ ... +** package ‘dynr’ successfully unpacked and MD5 sums checked +checking for gsl-config... no +configure: error: gsl-config not found, is GSL installed? +ERROR: configuration failed for package ‘dynr’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/dynr/new/dynr.Rcheck/dynr’ + +``` +### CRAN + +``` +* installing *source* package ‘dynr’ ... +** package ‘dynr’ successfully unpacked and MD5 sums checked +checking for gsl-config... no +configure: error: gsl-config not found, is GSL installed? +ERROR: configuration failed for package ‘dynr’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/dynr/old/dynr.Rcheck/dynr’ + +``` +# eegc + +
+ +* Version: 1.8.1 +* Source code: https://github.com/cran/eegc +* Date/Publication: 2018-12-21 +* Number of recursive dependencies: 154 + +Run `revdep_details(,"eegc")` for more info + +
+ +## In both + +* R CMD check timed out + + +* checking Rd cross-references ... WARNING + ``` + Missing link or links in documentation object 'barplotEnrich.Rd': + ‘[DOSE]{barplot.enrichResult}’ + + See section 'Cross-references' in the 'Writing R Extensions' manual. + ``` + +* checking installed package size ... NOTE + ``` + installed size is 11.7Mb + sub-directories of 1Mb or more: + data 11.0Mb + ``` + +* checking R code for possible problems ... NOTE + ``` + ... + grnPlot: no visible global function definition for ‘legend’ + markerScatter: no visible global function definition for + ‘colorRampPalette’ + markerScatter: no visible global function definition for ‘plot’ + markerScatter: no visible global function definition for ‘points’ + markerScatter: no visible global function definition for ‘lm’ + markerScatter: no visible global function definition for ‘abline’ + markerScatter: no visible global function definition for ‘text’ + markerScatter: no visible global function definition for ‘legend’ + Undefined global functions or variables: + abline adjustcolor axis colorRampPalette control density dev.copy2pdf + legend lines lm model.matrix p.adjust par phyper plot points quantile + results text title treat + Consider adding + importFrom("grDevices", "adjustcolor", "colorRampPalette", + "dev.copy2pdf") + importFrom("graphics", "abline", "axis", "legend", "lines", "par", + "plot", "points", "text", "title") + importFrom("stats", "density", "lm", "model.matrix", "p.adjust", + "phyper", "quantile") + to your NAMESPACE file. + ``` + +# ELMER + +
+ +* Version: 2.6.3 +* Source code: https://github.com/cran/ELMER +* Date/Publication: 2019-04-02 +* Number of recursive dependencies: 209 + +Run `revdep_details(,"ELMER")` for more info + +
+ +## In both + +* checking whether package ‘ELMER’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/ELMER/new/ELMER.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘ELMER’ ... +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : + there is no package called 'sesameData' +ERROR: lazy loading failed for package 'ELMER' +* removing '/Users/max/github/forks/ggplot2/revdep/checks.noindex/ELMER/new/ELMER.Rcheck/ELMER' + +``` +### CRAN + +``` +* installing *source* package ‘ELMER’ ... +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : + there is no package called 'sesameData' +ERROR: lazy loading failed for package 'ELMER' +* removing '/Users/max/github/forks/ggplot2/revdep/checks.noindex/ELMER/old/ELMER.Rcheck/ELMER' + +``` +# esATAC + +
+ +* Version: 1.4.5 +* Source code: https://github.com/cran/esATAC +* URL: https://github.com/wzthu/esATAC +* BugReports: https://github.com/wzthu/esATAC/issues +* Date/Publication: 2019-03-22 +* Number of recursive dependencies: 180 + +Run `revdep_details(,"esATAC")` for more info + +
+ +## In both + +* checking whether package ‘esATAC’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/esATAC/new/esATAC.Rcheck/00install.out’ for details. + ``` + +* checking package dependencies ... NOTE + ``` + Packages suggested but not available for checking: + ‘BSgenome.Hsapiens.UCSC.hg19’ ‘TxDb.Hsapiens.UCSC.hg19.knownGene’ + ``` + +* checking for hidden files and directories ... NOTE + ``` + Found the following hidden files and directories: + .BBSoptions + These were most likely included in error. See section ‘Package + structure’ in the ‘Writing R Extensions’ manual. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘esATAC’ ... +** libs +/usr/local/clang6/bin/clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DNDEBUG -DPLF_SYS_LINUX -DR_EVN_FLAG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/esATAC/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c BedLine.cpp -o BedLine.o +/usr/local/clang6/bin/clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DNDEBUG -DPLF_SYS_LINUX -DR_EVN_FLAG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/esATAC/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c BedUtils.cpp -o BedUtils.o +/usr/local/clang6/bin/clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DNDEBUG -DPLF_SYS_LINUX -DR_EVN_FLAG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/esATAC/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c ChrDivi.cpp -o ChrDivi.o +/usr/local/clang6/bin/clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DNDEBUG -DPLF_SYS_LINUX -DR_EVN_FLAG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/esATAC/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c CutCountPre.cpp -o CutCountPre.o +/usr/local/clang6/bin/clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DNDEBUG -DPLF_SYS_LINUX -DR_EVN_FLAG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/esATAC/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c CutSiteCount.cpp -o CutSiteCount.o +/usr/local/clang6/bin/clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DNDEBUG -DPLF_SYS_LINUX -DR_EVN_FLAG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/esATAC/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c LibComplexQC.cpp -o LibComplexQC.o +/usr/local/clang6/bin/clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DNDEBUG -DPLF_SYS_LINUX -DR_EVN_FLAG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/esATAC/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o +/usr/local/clang6/bin/clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DNDEBUG -DPLF_SYS_LINUX -DR_EVN_FLAG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/esATAC/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c SortBed.cpp -o SortBed.o +/usr/local/clang6/bin/clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DNDEBUG -DPLF_SYS_LINUX -DR_EVN_FLAG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/esATAC/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c rcpp_wrapper.cpp -o rcpp_wrapper.o +/usr/local/clang6/bin/clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DNDEBUG -DPLF_SYS_LINUX -DR_EVN_FLAG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/esATAC/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c renamer.cpp -o renamer.o +/usr/local/clang6/bin/clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DNDEBUG -DPLF_SYS_LINUX -DR_EVN_FLAG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/esATAC/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c sam2bed.cc -o sam2bed.o +sam2bed.cc:111:16: warning: unused variable 'xspm' [-Wunused-variable] + regmatch_t xspm[1]; + ^ +sam2bed.cc:280:16: warning: unused variable 'xspm' [-Wunused-variable] + regmatch_t xspm[1]; + ^ +2 warnings generated. +/usr/local/clang6/bin/clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o esATAC.so BedLine.o BedUtils.o ChrDivi.o CutCountPre.o CutSiteCount.o LibComplexQC.o RcppExports.o SortBed.o rcpp_wrapper.o renamer.o sam2bed.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation +ld: warning: text-based stub file /System/Library/Frameworks//CoreFoundation.framework/CoreFoundation.tbd and library file /System/Library/Frameworks//CoreFoundation.framework/CoreFoundation are out of sync. Falling back to library file for linking. +installing to /Users/max/github/forks/ggplot2/revdep/checks.noindex/esATAC/new/esATAC.Rcheck/esATAC/libs +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + there is no package called ‘TxDb.Hsapiens.UCSC.hg19.knownGene’ +ERROR: lazy loading failed for package ‘esATAC’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/esATAC/new/esATAC.Rcheck/esATAC’ + +``` +### CRAN + +``` +* installing *source* package ‘esATAC’ ... +** libs +/usr/local/clang6/bin/clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DNDEBUG -DPLF_SYS_LINUX -DR_EVN_FLAG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/esATAC/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c BedLine.cpp -o BedLine.o +/usr/local/clang6/bin/clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DNDEBUG -DPLF_SYS_LINUX -DR_EVN_FLAG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/esATAC/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c BedUtils.cpp -o BedUtils.o +/usr/local/clang6/bin/clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DNDEBUG -DPLF_SYS_LINUX -DR_EVN_FLAG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/esATAC/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c ChrDivi.cpp -o ChrDivi.o +/usr/local/clang6/bin/clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DNDEBUG -DPLF_SYS_LINUX -DR_EVN_FLAG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/esATAC/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c CutCountPre.cpp -o CutCountPre.o +/usr/local/clang6/bin/clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DNDEBUG -DPLF_SYS_LINUX -DR_EVN_FLAG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/esATAC/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c CutSiteCount.cpp -o CutSiteCount.o +/usr/local/clang6/bin/clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DNDEBUG -DPLF_SYS_LINUX -DR_EVN_FLAG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/esATAC/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c LibComplexQC.cpp -o LibComplexQC.o +/usr/local/clang6/bin/clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DNDEBUG -DPLF_SYS_LINUX -DR_EVN_FLAG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/esATAC/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o +/usr/local/clang6/bin/clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DNDEBUG -DPLF_SYS_LINUX -DR_EVN_FLAG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/esATAC/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c SortBed.cpp -o SortBed.o +/usr/local/clang6/bin/clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DNDEBUG -DPLF_SYS_LINUX -DR_EVN_FLAG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/esATAC/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c rcpp_wrapper.cpp -o rcpp_wrapper.o +/usr/local/clang6/bin/clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DNDEBUG -DPLF_SYS_LINUX -DR_EVN_FLAG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/esATAC/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c renamer.cpp -o renamer.o +/usr/local/clang6/bin/clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DNDEBUG -DPLF_SYS_LINUX -DR_EVN_FLAG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/esATAC/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c sam2bed.cc -o sam2bed.o +sam2bed.cc:111:16: warning: unused variable 'xspm' [-Wunused-variable] + regmatch_t xspm[1]; + ^ +sam2bed.cc:280:16: warning: unused variable 'xspm' [-Wunused-variable] + regmatch_t xspm[1]; + ^ +2 warnings generated. +/usr/local/clang6/bin/clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o esATAC.so BedLine.o BedUtils.o ChrDivi.o CutCountPre.o CutSiteCount.o LibComplexQC.o RcppExports.o SortBed.o rcpp_wrapper.o renamer.o sam2bed.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation +ld: warning: text-based stub file /System/Library/Frameworks//CoreFoundation.framework/CoreFoundation.tbd and library file /System/Library/Frameworks//CoreFoundation.framework/CoreFoundation are out of sync. Falling back to library file for linking. +installing to /Users/max/github/forks/ggplot2/revdep/checks.noindex/esATAC/old/esATAC.Rcheck/esATAC/libs +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + there is no package called ‘TxDb.Hsapiens.UCSC.hg19.knownGene’ +ERROR: lazy loading failed for package ‘esATAC’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/esATAC/old/esATAC.Rcheck/esATAC’ + +``` +# evoper + +
+ +* Version: 0.5.0 +* Source code: https://github.com/cran/evoper +* URL: https://github.com/antonio-pgarcia/evoper +* BugReports: https://github.com/antonio-pgarcia/evoper/issues +* Date/Publication: 2018-08-30 23:20:06 UTC +* Number of recursive dependencies: 58 + +Run `revdep_details(,"evoper")` for more info + +
+ +## In both + +* checking whether package ‘evoper’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/evoper/new/evoper.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘evoper’ ... +** package ‘evoper’ successfully unpacked and MD5 sums checked +** R +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘rJava’: + .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/evoper/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/evoper/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/evoper/rJava/libs/rJava.so + Reason: image not found +Error : package ‘rJava’ could not be loaded +ERROR: lazy loading failed for package ‘evoper’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/evoper/new/evoper.Rcheck/evoper’ + +``` +### CRAN + +``` +* installing *source* package ‘evoper’ ... +** package ‘evoper’ successfully unpacked and MD5 sums checked +** R +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘rJava’: + .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/evoper/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/evoper/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/evoper/rJava/libs/rJava.so + Reason: image not found +Error : package ‘rJava’ could not be loaded +ERROR: lazy loading failed for package ‘evoper’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/evoper/old/evoper.Rcheck/evoper’ + +``` +# ewoc + +
+ +* Version: 0.2.0 +* Source code: https://github.com/cran/ewoc +* URL: https://github.com/dnzmarcio/ewoc/ +* BugReports: https://github.com/dnzmarcio/ewoc/issues +* Date/Publication: 2018-01-20 21:16:49 UTC +* Number of recursive dependencies: 40 + +Run `revdep_details(,"ewoc")` for more info + +
+ +## In both + +* checking whether package ‘ewoc’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/ewoc/new/ewoc.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘ewoc’ ... +** package ‘ewoc’ successfully unpacked and MD5 sums checked +** R +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rjags', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/ewoc/rjags/libs/rjags.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/ewoc/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/ewoc/rjags/libs/rjags.so + Reason: image not found +ERROR: lazy loading failed for package ‘ewoc’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/ewoc/new/ewoc.Rcheck/ewoc’ + +``` +### CRAN + +``` +* installing *source* package ‘ewoc’ ... +** package ‘ewoc’ successfully unpacked and MD5 sums checked +** R +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rjags', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/ewoc/rjags/libs/rjags.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/ewoc/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/ewoc/rjags/libs/rjags.so + Reason: image not found +ERROR: lazy loading failed for package ‘ewoc’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/ewoc/old/ewoc.Rcheck/ewoc’ + +``` +# fgsea + +
+ +* Version: +* Source code: ??? +* URL: http://ggplot2.tidyverse.org, https://github.com/tidyverse/ggplot2 +* BugReports: https://github.com/tidyverse/ggplot2/issues +* Number of recursive dependencies: 0 + +Run `revdep_details(,"")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + +installing the source packages ‘org.Mm.eg.db’, ‘reactome.db’ + + + +``` +### CRAN + +``` + + + +installing the source packages ‘org.Mm.eg.db’, ‘reactome.db’ + + + +``` +# fingerPro + +
+ +* Version: 1.1 +* Source code: https://github.com/cran/fingerPro +* URL: https://github.com/eead-csic-eesa +* Date/Publication: 2018-08-28 10:04:54 UTC +* Number of recursive dependencies: 135 + +Run `revdep_details(,"fingerPro")` for more info + +
+ +## In both + +* checking whether package ‘fingerPro’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/fingerPro/new/fingerPro.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘fingerPro’ ... +** package ‘fingerPro’ successfully unpacked and MD5 sums checked +** libs +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/fingerPro/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/fingerPro/RcppGSL/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/fingerPro/RcppProgress/include" -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/fingerPro/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/fingerPro/RcppGSL/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/fingerPro/RcppProgress/include" -I/usr/local/include -fPIC -Wall -g -O2 -c fingerprinting.cpp -o fingerprinting.o +In file included from RcppExports.cpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/fingerPro/RcppGSL/include/RcppGSL.h:25: +/Users/max/github/forks/ggplot2/revdep/library.noindex/fingerPro/RcppGSL/include/RcppGSLForward.h:26:10: fatal error: 'gsl/gsl_vector.h' file not found +#include + ^~~~~~~~~~~~~~~~~~ +1 error generated. +make: *** [RcppExports.o] Error 1 +make: *** Waiting for unfinished jobs.... +In file included from fingerprinting.cpp:5: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/fingerPro/RcppGSL/include/RcppGSL.h:25: +/Users/max/github/forks/ggplot2/revdep/library.noindex/fingerPro/RcppGSL/include/RcppGSLForward.h:26:10: fatal error: 'gsl/gsl_vector.h' file not found +#include + ^~~~~~~~~~~~~~~~~~ +1 error generated. +make: *** [fingerprinting.o] Error 1 +ERROR: compilation failed for package ‘fingerPro’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/fingerPro/new/fingerPro.Rcheck/fingerPro’ + +``` +### CRAN + +``` +* installing *source* package ‘fingerPro’ ... +** package ‘fingerPro’ successfully unpacked and MD5 sums checked +** libs +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/fingerPro/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/fingerPro/RcppGSL/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/fingerPro/RcppProgress/include" -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/fingerPro/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/fingerPro/RcppGSL/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/fingerPro/RcppProgress/include" -I/usr/local/include -fPIC -Wall -g -O2 -c fingerprinting.cpp -o fingerprinting.o +In file included from RcppExports.cpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/fingerPro/RcppGSL/include/RcppGSL.h:25: +/Users/max/github/forks/ggplot2/revdep/library.noindex/fingerPro/RcppGSL/include/RcppGSLForward.h:26:10: fatal error: 'gsl/gsl_vector.h' file not found +#include + ^~~~~~~~~~~~~~~~~~ +1 error generated. +make: *** [RcppExports.o] Error 1 +make: *** Waiting for unfinished jobs.... +In file included from fingerprinting.cpp:5: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/fingerPro/RcppGSL/include/RcppGSL.h:25: +/Users/max/github/forks/ggplot2/revdep/library.noindex/fingerPro/RcppGSL/include/RcppGSLForward.h:26:10: fatal error: 'gsl/gsl_vector.h' file not found +#include + ^~~~~~~~~~~~~~~~~~ +1 error generated. +make: *** [fingerprinting.o] Error 1 +ERROR: compilation failed for package ‘fingerPro’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/fingerPro/old/fingerPro.Rcheck/fingerPro’ + +``` +# fsdaR + +
+ +* Version: 0.4-6 +* Source code: https://github.com/cran/fsdaR +* Date/Publication: 2019-03-14 05:30:03 UTC +* Number of recursive dependencies: 40 + +Run `revdep_details(,"fsdaR")` for more info + +
+ +## In both + +* checking whether package ‘fsdaR’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/fsdaR/new/fsdaR.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘fsdaR’ ... +** package ‘fsdaR’ successfully unpacked and MD5 sums checked +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/fsdaR/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/fsdaR/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/fsdaR/rJava/libs/rJava.so + Reason: image not found +ERROR: lazy loading failed for package ‘fsdaR’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/fsdaR/new/fsdaR.Rcheck/fsdaR’ + +``` +### CRAN + +``` +* installing *source* package ‘fsdaR’ ... +** package ‘fsdaR’ successfully unpacked and MD5 sums checked +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/fsdaR/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/fsdaR/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/fsdaR/rJava/libs/rJava.so + Reason: image not found +ERROR: lazy loading failed for package ‘fsdaR’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/fsdaR/old/fsdaR.Rcheck/fsdaR’ + +``` +# G2Sd + +
+ +* Version: 2.1.5 +* Source code: https://github.com/cran/G2Sd +* URL: https://cran.r-project.org/package=G2Sd, http://regisgallon.wordpress.com/r-software/ +* Date/Publication: 2015-12-07 22:13:45 +* Number of recursive dependencies: 46 + +Run `revdep_details(,"G2Sd")` for more info + +
+ +## In both + +* checking whether package ‘G2Sd’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/G2Sd/new/G2Sd.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘G2Sd’ ... +** package ‘G2Sd’ successfully unpacked and MD5 sums checked +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/G2Sd/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/G2Sd/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/G2Sd/rJava/libs/rJava.so + Reason: image not found +ERROR: lazy loading failed for package ‘G2Sd’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/G2Sd/new/G2Sd.Rcheck/G2Sd’ + +``` +### CRAN + +``` +* installing *source* package ‘G2Sd’ ... +** package ‘G2Sd’ successfully unpacked and MD5 sums checked +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/G2Sd/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/G2Sd/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/G2Sd/rJava/libs/rJava.so + Reason: image not found +ERROR: lazy loading failed for package ‘G2Sd’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/G2Sd/old/G2Sd.Rcheck/G2Sd’ + +``` +# GARS + +
+ +* Version: 1.2.0 +* Source code: https://github.com/cran/GARS +* Date/Publication: 2018-10-30 +* Number of recursive dependencies: 205 + +Run `revdep_details(,"GARS")` for more info + +
+ +## In both + +* checking whether package ‘GARS’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/GARS/new/GARS.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘GARS’ ... +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/GARS/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/GARS/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/GARS/rJava/libs/rJava.so + Reason: image not found +ERROR: lazy loading failed for package ‘GARS’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/GARS/new/GARS.Rcheck/GARS’ + +``` +### CRAN + +``` +* installing *source* package ‘GARS’ ... +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/GARS/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/GARS/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/GARS/rJava/libs/rJava.so + Reason: image not found +ERROR: lazy loading failed for package ‘GARS’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/GARS/old/GARS.Rcheck/GARS’ + +``` +# gastempt + +
+ +* Version: 0.4.4 +* Source code: https://github.com/cran/gastempt +* URL: http://github.com/dmenne/gastempt +* BugReports: http://github.com/dmenne/gastempt/issues +* Date/Publication: 2019-03-06 16:32:41 UTC +* Number of recursive dependencies: 82 + +Run `revdep_details(,"gastempt")` for more info + +
+ +## Newly broken + +* checking whether package ‘gastempt’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/gastempt/new/gastempt.Rcheck/00install.out’ for details. + ``` + +## Newly fixed + +* checking installed package size ... NOTE + ``` + installed size is 7.9Mb + sub-directories of 1Mb or more: + libs 7.5Mb + ``` + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘methods’ ‘rstantools’ + All declared Imports should be used. + ``` + +* checking for GNU extensions in Makefiles ... NOTE + ``` + GNU make is a SystemRequirements. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘gastempt’ ... +** package ‘gastempt’ successfully unpacked and MD5 sums checked +** libs +"/Library/Frameworks/R.framework/Resources/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/linexp_gastro_1b.stan +"/Library/Frameworks/R.framework/Resources/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/linexp_gastro_1c.stan +"/Library/Frameworks/R.framework/Resources/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/linexp_gastro_1d.stan +"/Library/Frameworks/R.framework/Resources/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/linexp_gastro_2b.stan +Wrote C++ file "stan_files/linexp_gastro_1c.cc" +Wrote C++ file "stan_files/linexp_gastro_1b.cc" +Wrote C++ file "stan_files/linexp_gastro_1d.cc" +Wrote C++ file "stan_files/linexp_gastro_2b.cc" +Error in readRDS("/var/folders/lb/xhxqmcrd7gv302_b1pdfykh80000gn/T//RtmpNeTeBk/file30e631b2ee0") : + error reading from connection +Calls: .Last -> readRDS +Execution halted +"/Library/Frameworks/R.framework/Resources/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/linexp_gastro_2c.stan +"/Library/Frameworks/R.framework/Resources/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/powexp_gastro_1b.stan +make: *** [stan_files/linexp_gastro_1d.cc] Error 1 +make: *** Waiting for unfinished jobs.... +Wrote C++ file "stan_files/linexp_gastro_2c.cc" +Wrote C++ file "stan_files/powexp_gastro_1b.cc" +rm stan_files/linexp_gastro_2c.cc stan_files/linexp_gastro_1d.cc stan_files/linexp_gastro_1b.cc stan_files/linexp_gastro_2b.cc stan_files/linexp_gastro_1c.cc stan_files/powexp_gastro_1b.cc +ERROR: compilation failed for package ‘gastempt’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/gastempt/new/gastempt.Rcheck/gastempt’ + +``` +### CRAN + +``` +* installing *source* package ‘gastempt’ ... +** package ‘gastempt’ successfully unpacked and MD5 sums checked +** libs +"/Library/Frameworks/R.framework/Resources/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/linexp_gastro_1b.stan +"/Library/Frameworks/R.framework/Resources/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/linexp_gastro_1c.stan +"/Library/Frameworks/R.framework/Resources/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/linexp_gastro_1d.stan +"/Library/Frameworks/R.framework/Resources/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/linexp_gastro_2b.stan +Wrote C++ file "stan_files/linexp_gastro_1d.cc" +Wrote C++ file "stan_files/linexp_gastro_1c.cc" +Wrote C++ file "stan_files/linexp_gastro_1b.cc" +Wrote C++ file "stan_files/linexp_gastro_2b.cc" +"/Library/Frameworks/R.framework/Resources/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/linexp_gastro_2c.stan +"/Library/Frameworks/R.framework/Resources/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/powexp_gastro_1b.stan +"/Library/Frameworks/R.framework/Resources/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/powexp_gastro_2c.stan + + +/usr/local/clang6/bin/clang++ -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c init.cpp -o init.o + + +/usr/local/clang6/bin/clang++ -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c stan_files/linexp_gastro_1b.cc -o stan_files/linexp_gastro_1b.o +Wrote C++ file "stan_files/powexp_gastro_1b.cc" +Wrote C++ file "stan_files/linexp_gastro_2c.cc" +Wrote C++ file "stan_files/powexp_gastro_2c.cc" + + +/usr/local/clang6/bin/clang++ -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c stan_files/linexp_gastro_1c.cc -o stan_files/linexp_gastro_1c.o + + +/usr/local/clang6/bin/clang++ -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c stan_files/linexp_gastro_1d.cc -o stan_files/linexp_gastro_1d.o + + +/usr/local/clang6/bin/clang++ -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c stan_files/linexp_gastro_2b.cc -o stan_files/linexp_gastro_2b.o + + +In file included from stan_files/linexp_gastro_1b.cc:3: +In file included from stan_files/linexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:15: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/additive_combine.hpp:27: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/linear_congruential.hpp:30: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/detail/const_mod.hpp:23: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/detail/large_arithmetic.hpp:19: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/detail/integer_log2.hpp:19: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/pending/integer_log2.hpp:7:1: warning: This header is deprecated. Use instead. [-W#pragma-messages] +BOOST_HEADER_DEPRECATED(""); +^ +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED' +# define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.") + ^ +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' +# define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) + ^ +:32:2: note: expanded from here + message("This header is deprecated. Use " "" " instead.") + ^ +In file included from stan_files/linexp_gastro_1c.cc:3: +In file included from stan_files/linexp_gastro_1c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:15: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/additive_combine.hpp:27: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/linear_congruential.hpp:30: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/detail/const_mod.hpp:23: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/detail/large_arithmetic.hpp:19: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/detail/integer_log2.hpp:19: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/pending/integer_log2.hpp:7:1: warning: This header is deprecated. Use instead. [-W#pragma-messages] +BOOST_HEADER_DEPRECATED(""); +^ +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED' +# define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.") + ^ +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' +# define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) + ^ +:32:2: note: expanded from here + message("This header is deprecated. Use " "" " instead.") + ^ +In file included from stan_files/linexp_gastro_1d.cc:3: +In file included from stan_files/linexp_gastro_1d.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:15: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/additive_combine.hpp:27: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/linear_congruential.hpp:30: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/detail/const_mod.hpp:23: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/detail/large_arithmetic.hpp:19: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/detail/integer_log2.hpp:19: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/pending/integer_log2.hpp:7:1: warning: This header is deprecated. Use instead. [-W#pragma-messages] +BOOST_HEADER_DEPRECATED(""); +^ +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED' +# define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.") + ^ +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' +# define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) + ^ +:32:2: note: expanded from here + message("This header is deprecated. Use " "" " instead.") + ^ +In file included from stan_files/linexp_gastro_2b.cc:3: +In file included from stan_files/linexp_gastro_2b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:15: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/additive_combine.hpp:27: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/linear_congruential.hpp:30: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/detail/const_mod.hpp:23: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/detail/large_arithmetic.hpp:19: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/detail/integer_log2.hpp:19: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/pending/integer_log2.hpp:7:1: warning: This header is deprecated. Use instead. [-W#pragma-messages] +BOOST_HEADER_DEPRECATED(""); +^ +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED' +# define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.") + ^ +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' +# define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) + ^ +:32:2: note: expanded from here + message("This header is deprecated. Use " "" " instead.") + ^ +In file included from stan_files/linexp_gastro_1b.cc:3: +In file included from stan_files/linexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:1: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Core:535: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1b.cc:3: +In file included from stan_files/linexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:2: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/LU:47: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1b.cc:3: +In file included from stan_files/linexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Cholesky:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Jacobi:29: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1b.cc:3: +In file included from stan_files/linexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Cholesky:43: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1b.cc:3: +In file included from stan_files/linexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/QR:17: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Householder:27: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1b.cc:3: +In file included from stan_files/linexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:5: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/SVD:48: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1b.cc:3: +In file included from stan_files/linexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Geometry:58: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1b.cc:3: +In file included from stan_files/linexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Eigenvalues:58: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1c.cc:3: +In file included from stan_files/linexp_gastro_1c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:1: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Core:535: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1c.cc:3: +In file included from stan_files/linexp_gastro_1c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:2: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/LU:47: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1c.cc:3: +In file included from stan_files/linexp_gastro_1c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Cholesky:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Jacobi:29: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1c.cc:3: +In file included from stan_files/linexp_gastro_1c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Cholesky:43: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1c.cc:3: +In file included from stan_files/linexp_gastro_1c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/QR:17: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Householder:27: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1c.cc:3: +In file included from stan_files/linexp_gastro_1c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:5: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/SVD:48: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1c.cc:3: +In file included from stan_files/linexp_gastro_1c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Geometry:58: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1c.cc:3: +In file included from stan_files/linexp_gastro_1c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Eigenvalues:58: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1d.cc:3: +In file included from stan_files/linexp_gastro_1d.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:1: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Core:535: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1d.cc:3: +In file included from stan_files/linexp_gastro_1d.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:2: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/LU:47: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1d.cc:3: +In file included from stan_files/linexp_gastro_1d.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Cholesky:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Jacobi:29: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1d.cc:3: +In file included from stan_files/linexp_gastro_1d.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Cholesky:43: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1d.cc:3: +In file included from stan_files/linexp_gastro_1d.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/QR:17: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Householder:27: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1d.cc:3: +In file included from stan_files/linexp_gastro_1d.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:5: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/SVD:48: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1d.cc:3: +In file included from stan_files/linexp_gastro_1d.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Geometry:58: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1d.cc:3: +In file included from stan_files/linexp_gastro_1d.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Eigenvalues:58: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_2b.cc:3: +In file included from stan_files/linexp_gastro_2b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:1: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Core:535: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_2b.cc:3: +In file included from stan_files/linexp_gastro_2b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:2: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/LU:47: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_2b.cc:3: +In file included from stan_files/linexp_gastro_2b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Cholesky:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Jacobi:29: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_2b.cc:3: +In file included from stan_files/linexp_gastro_2b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Cholesky:43: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_2b.cc:3: +In file included from stan_files/linexp_gastro_2b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/QR:17: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Householder:27: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_2b.cc:3: +In file included from stan_files/linexp_gastro_2b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:5: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/SVD:48: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_2b.cc:3: +In file included from stan_files/linexp_gastro_2b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Geometry:58: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_2b.cc:3: +In file included from stan_files/linexp_gastro_2b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Eigenvalues:58: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1b.cc:3: +In file included from stan_files/linexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:26: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/SparseCore:66: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1b.cc:3: +In file included from stan_files/linexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:27: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/OrderingMethods:71: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1b.cc:3: +In file included from stan_files/linexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:29: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/SparseCholesky:43: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1b.cc:3: +In file included from stan_files/linexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:32: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/SparseQR:35: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1b.cc:3: +In file included from stan_files/linexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:33: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/IterativeLinearSolvers:46: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1c.cc:3: +In file included from stan_files/linexp_gastro_1c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:26: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/SparseCore:66: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1c.cc:3: +In file included from stan_files/linexp_gastro_1c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:27: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/OrderingMethods:71: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1c.cc:3: +In file included from stan_files/linexp_gastro_1c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:29: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/SparseCholesky:43: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1c.cc:3: +In file included from stan_files/linexp_gastro_1c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:32: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/SparseQR:35: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1c.cc:3: +In file included from stan_files/linexp_gastro_1c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:33: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/IterativeLinearSolvers:46: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1d.cc:3: +In file included from stan_files/linexp_gastro_1d.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:26: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/SparseCore:66: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1d.cc:3: +In file included from stan_files/linexp_gastro_1d.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:27: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/OrderingMethods:71: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1d.cc:3: +In file included from stan_files/linexp_gastro_1d.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:29: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/SparseCholesky:43: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1d.cc:3: +In file included from stan_files/linexp_gastro_1d.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:32: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/SparseQR:35: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1d.cc:3: +In file included from stan_files/linexp_gastro_1d.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:33: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/IterativeLinearSolvers:46: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_2b.cc:3: +In file included from stan_files/linexp_gastro_2b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:26: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/SparseCore:66: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_2b.cc:3: +In file included from stan_files/linexp_gastro_2b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:27: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/OrderingMethods:71: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_2b.cc:3: +In file included from stan_files/linexp_gastro_2b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:29: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/SparseCholesky:43: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_2b.cc:3: +In file included from stan_files/linexp_gastro_2b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:32: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/SparseQR:35: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_2b.cc:3: +In file included from stan_files/linexp_gastro_2b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:33: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/IterativeLinearSolvers:46: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1b.cc:3: +In file included from stan_files/linexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:44: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints.hpp:14:13: warning: unused function 'set_zero_all_adjoints' [-Wunused-function] +static void set_zero_all_adjoints() { + ^ +In file included from stan_files/linexp_gastro_1b.cc:3: +In file included from stan_files/linexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:70: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/autocorrelation.hpp:18:8: warning: function 'fft_next_good_size' is not needed and will not be emitted [-Wunneeded-internal-declaration] +size_t fft_next_good_size(size_t N) { + ^ +In file included from stan_files/linexp_gastro_1c.cc:3: +In file included from stan_files/linexp_gastro_1c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:44: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints.hpp:14:13: warning: unused function 'set_zero_all_adjoints' [-Wunused-function] +static void set_zero_all_adjoints() { + ^ +In file included from stan_files/linexp_gastro_1c.cc:3: +In file included from stan_files/linexp_gastro_1c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:70: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/autocorrelation.hpp:18:8: warning: function 'fft_next_good_size' is not needed and will not be emitted [-Wunneeded-internal-declaration] +size_t fft_next_good_size(size_t N) { + ^ +In file included from stan_files/linexp_gastro_1d.cc:3: +In file included from stan_files/linexp_gastro_1d.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:44: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints.hpp:14:13: warning: unused function 'set_zero_all_adjoints' [-Wunused-function] +static void set_zero_all_adjoints() { + ^ +In file included from stan_files/linexp_gastro_1d.cc:3: +In file included from stan_files/linexp_gastro_1d.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:70: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/autocorrelation.hpp:18:8: warning: function 'fft_next_good_size' is not needed and will not be emitted [-Wunneeded-internal-declaration] +size_t fft_next_good_size(size_t N) { + ^ +In file included from stan_files/linexp_gastro_2b.cc:3: +In file included from stan_files/linexp_gastro_2b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:44: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints.hpp:14:13: warning: unused function 'set_zero_all_adjoints' [-Wunused-function] +static void set_zero_all_adjoints() { + ^ +In file included from stan_files/linexp_gastro_2b.cc:3: +In file included from stan_files/linexp_gastro_2b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:70: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/autocorrelation.hpp:18:8: warning: function 'fft_next_good_size' is not needed and will not be emitted [-Wunneeded-internal-declaration] +size_t fft_next_good_size(size_t N) { + ^ +16 warnings generated. +/usr/local/clang6/bin/clang++ -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c stan_files/linexp_gastro_2c.cc -o stan_files/linexp_gastro_2c.o + + +16 warnings generated. +/usr/local/clang6/bin/clang++ -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c stan_files/powexp_gastro_1b.cc -o stan_files/powexp_gastro_1b.o + + +16 warnings generated. +/usr/local/clang6/bin/clang++ -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c stan_files/powexp_gastro_2c.cc -o stan_files/powexp_gastro_2c.o +In file included from stan_files/linexp_gastro_2c.cc:3: +In file included from stan_files/linexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:15: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/additive_combine.hpp:27: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/linear_congruential.hpp:30: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/detail/const_mod.hpp:23: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/detail/large_arithmetic.hpp:19: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/detail/integer_log2.hpp:19: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/pending/integer_log2.hpp:7:1: warning: This header is deprecated. Use instead. [-W#pragma-messages] +BOOST_HEADER_DEPRECATED(""); +^ +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED' +# define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.") + ^ +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' +# define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) + ^ +:32:2: note: expanded from here + message("This header is deprecated. Use " "" " instead.") + ^ +In file included from stan_files/linexp_gastro_2c.cc:3: +In file included from stan_files/linexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:1: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Core:535: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_2c.cc:3: +In file included from stan_files/linexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:2: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/LU:47: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_2c.cc:3: +In file included from stan_files/linexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Cholesky:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Jacobi:29: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_2c.cc:3: +In file included from stan_files/linexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Cholesky:43: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_2c.cc:3: +In file included from stan_files/linexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/QR:17: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Householder:27: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_2c.cc:3: +In file included from stan_files/linexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:5: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/SVD:48: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_2c.cc:3: +In file included from stan_files/linexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Geometry:58: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_2c.cc:3: +In file included from stan_files/linexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Eigenvalues:58: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/powexp_gastro_1b.cc:3: +In file included from stan_files/powexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:15: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/additive_combine.hpp:27: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/linear_congruential.hpp:30: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/detail/const_mod.hpp:23: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/detail/large_arithmetic.hpp:19: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/detail/integer_log2.hpp:19: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/pending/integer_log2.hpp:7:1: warning: This header is deprecated. Use instead. [-W#pragma-messages] +BOOST_HEADER_DEPRECATED(""); +^ +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED' +# define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.") + ^ +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' +# define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) + ^ +:32:2: note: expanded from here + message("This header is deprecated. Use " "" " instead.") + ^ +In file included from stan_files/powexp_gastro_2c.cc:3: +In file included from stan_files/powexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:15: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/additive_combine.hpp:27: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/linear_congruential.hpp:30: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/detail/const_mod.hpp:23: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/detail/large_arithmetic.hpp:19: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/detail/integer_log2.hpp:19: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/pending/integer_log2.hpp:7:1: warning: This header is deprecated. Use instead. [-W#pragma-messages] +BOOST_HEADER_DEPRECATED(""); +^ +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED' +# define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.") + ^ +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' +# define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) + ^ +:32:2: note: expanded from here + message("This header is deprecated. Use " "" " instead.") + ^ +In file included from stan_files/powexp_gastro_1b.cc:3: +In file included from stan_files/powexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:1: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Core:535: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/powexp_gastro_1b.cc:3: +In file included from stan_files/powexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:2: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/LU:47: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/powexp_gastro_1b.cc:3: +In file included from stan_files/powexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Cholesky:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Jacobi:29: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/powexp_gastro_1b.cc:3: +In file included from stan_files/powexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Cholesky:43: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/powexp_gastro_1b.cc:3: +In file included from stan_files/powexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/QR:17: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Householder:27: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/powexp_gastro_1b.cc:3: +In file included from stan_files/powexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:5: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/SVD:48: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/powexp_gastro_1b.cc:3: +In file included from stan_files/powexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Geometry:58: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_2c.cc:3: +In file included from stan_files/linexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:26: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/SparseCore:66: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_2c.cc:3: +In file included from stan_files/linexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:27: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/OrderingMethods:71: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_2c.cc:3: +In file included from stan_files/linexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:29: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/SparseCholesky:43: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/powexp_gastro_1b.cc:3: +In file included from stan_files/powexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Eigenvalues:58: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_2c.cc:3: +In file included from stan_files/linexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:32: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/SparseQR:35: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_2c.cc:3: +In file included from stan_files/linexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:33: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/IterativeLinearSolvers:46: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/powexp_gastro_2c.cc:3: +In file included from stan_files/powexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:1: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Core:535: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/powexp_gastro_2c.cc:3: +In file included from stan_files/powexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:2: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/LU:47: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/powexp_gastro_2c.cc:3: +In file included from stan_files/powexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Cholesky:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Jacobi:29: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/powexp_gastro_2c.cc:3: +In file included from stan_files/powexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Cholesky:43: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/powexp_gastro_2c.cc:3: +In file included from stan_files/powexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/QR:17: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Householder:27: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/powexp_gastro_2c.cc:3: +In file included from stan_files/powexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:5: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/SVD:48: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/powexp_gastro_2c.cc:3: +In file included from stan_files/powexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Geometry:58: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/powexp_gastro_2c.cc:3: +In file included from stan_files/powexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Eigenvalues:58: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/powexp_gastro_1b.cc:3: +In file included from stan_files/powexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:26: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/SparseCore:66: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/powexp_gastro_1b.cc:3: +In file included from stan_files/powexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:27: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/OrderingMethods:71: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/powexp_gastro_1b.cc:3: +In file included from stan_files/powexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:29: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/SparseCholesky:43: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/powexp_gastro_1b.cc:3: +In file included from stan_files/powexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:32: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/SparseQR:35: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/powexp_gastro_1b.cc:3: +In file included from stan_files/powexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:33: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/IterativeLinearSolvers:46: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/powexp_gastro_2c.cc:3: +In file included from stan_files/powexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:26: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/SparseCore:66: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/powexp_gastro_2c.cc:3: +In file included from stan_files/powexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:27: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/OrderingMethods:71: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/powexp_gastro_2c.cc:3: +In file included from stan_files/powexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:29: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/SparseCholesky:43: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/powexp_gastro_2c.cc:3: +In file included from stan_files/powexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:32: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/SparseQR:35: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/powexp_gastro_2c.cc:3: +In file included from stan_files/powexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:33: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/IterativeLinearSolvers:46: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +16 warnings generated. +In file included from stan_files/linexp_gastro_2c.cc:3: +In file included from stan_files/linexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:44: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints.hpp:14:13: warning: unused function 'set_zero_all_adjoints' [-Wunused-function] +static void set_zero_all_adjoints() { + ^ +In file included from stan_files/linexp_gastro_2c.cc:3: +In file included from stan_files/linexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:70: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/autocorrelation.hpp:18:8: warning: function 'fft_next_good_size' is not needed and will not be emitted [-Wunneeded-internal-declaration] +size_t fft_next_good_size(size_t N) { + ^ +In file included from stan_files/powexp_gastro_1b.cc:3: +In file included from stan_files/powexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:44: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints.hpp:14:13: warning: unused function 'set_zero_all_adjoints' [-Wunused-function] +static void set_zero_all_adjoints() { + ^ +In file included from stan_files/powexp_gastro_1b.cc:3: +In file included from stan_files/powexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:70: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/autocorrelation.hpp:18:8: warning: function 'fft_next_good_size' is not needed and will not be emitted [-Wunneeded-internal-declaration] +size_t fft_next_good_size(size_t N) { + ^ +In file included from stan_files/powexp_gastro_2c.cc:3: +In file included from stan_files/powexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:44: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints.hpp:14:13: warning: unused function 'set_zero_all_adjoints' [-Wunused-function] +static void set_zero_all_adjoints() { + ^ +In file included from stan_files/powexp_gastro_2c.cc:3: +In file included from stan_files/powexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:70: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/autocorrelation.hpp:18:8: warning: function 'fft_next_good_size' is not needed and will not be emitted [-Wunneeded-internal-declaration] +size_t fft_next_good_size(size_t N) { + ^ +16 warnings generated. +16 warnings generated. +16 warnings generated. +/usr/local/clang6/bin/clang++ -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o gastempt.so stan_files/linexp_gastro_1b.o stan_files/linexp_gastro_1c.o stan_files/linexp_gastro_1d.o stan_files/linexp_gastro_2b.o stan_files/linexp_gastro_2c.o stan_files/powexp_gastro_1b.o stan_files/powexp_gastro_2c.o init.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation +ld: warning: text-based stub file /System/Library/Frameworks//CoreFoundation.framework/CoreFoundation.tbd and library file /System/Library/Frameworks//CoreFoundation.framework/CoreFoundation are out of sync. Falling back to library file for linking. +rm stan_files/linexp_gastro_2c.cc stan_files/linexp_gastro_1d.cc stan_files/powexp_gastro_2c.cc stan_files/linexp_gastro_1b.cc stan_files/linexp_gastro_2b.cc stan_files/linexp_gastro_1c.cc stan_files/powexp_gastro_1b.cc +installing to /Users/max/github/forks/ggplot2/revdep/checks.noindex/gastempt/old/gastempt.Rcheck/gastempt/libs +** R +** inst +** byte-compile and prepare package for lazy loading +** help +*** installing help indices +** building package indices +** installing vignettes +** testing if installed package can be loaded +* DONE (gastempt) + +``` +# HPAanalyze + +
+ +* Version: 1.0.0 +* Source code: https://github.com/cran/HPAanalyze +* Date/Publication: 2018-10-30 +* Number of recursive dependencies: 91 + +Run `revdep_details(,"HPAanalyze")` for more info + +
+ +## In both + +* checking whether package ‘HPAanalyze’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/HPAanalyze/new/HPAanalyze.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘HPAanalyze’ ... +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/HPAanalyze/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/HPAanalyze/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/HPAanalyze/rJava/libs/rJava.so + Reason: image not found +ERROR: lazy loading failed for package ‘HPAanalyze’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/HPAanalyze/new/HPAanalyze.Rcheck/HPAanalyze’ + +``` +### CRAN + +``` +* installing *source* package ‘HPAanalyze’ ... +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/HPAanalyze/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/HPAanalyze/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/HPAanalyze/rJava/libs/rJava.so + Reason: image not found +ERROR: lazy loading failed for package ‘HPAanalyze’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/HPAanalyze/old/HPAanalyze.Rcheck/HPAanalyze’ + +``` +# iBMQ + +
+ +* Version: 1.22.0 +* Source code: https://github.com/cran/iBMQ +* URL: http://www.rglab.org +* Date/Publication: 2018-10-30 +* Number of recursive dependencies: 35 + +Run `revdep_details(,"iBMQ")` for more info + +
+ +## In both + +* checking whether package ‘iBMQ’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/iBMQ/new/iBMQ.Rcheck/00install.out’ for details. + ``` + +* checking for hidden files and directories ... NOTE + ``` + Found the following hidden files and directories: + .BBSoptions + These were most likely included in error. See section ‘Package + structure’ in the ‘Writing R Extensions’ manual. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘iBMQ’ ... +checking for gcc... clang +checking whether the C compiler works... yes +checking for C compiler default output file name... a.out +checking for suffix of executables... +checking whether we are cross compiling... no +checking for suffix of object files... o +checking whether we are using the GNU C compiler... yes +checking whether clang accepts -g... yes +checking for clang option to accept ISO C89... none needed +checking how to run the C preprocessor... clang -E +checking for pkg-config... /usr/local/bin/pkg-config +checking pkg-config is at least version 0.9.0... yes +checking for GSL... no +checking for gsl-config... no +checking for GSL - version >= 1.2... no +*** The gsl-config script installed by GSL could not be found +*** If GSL was installed in PREFIX, make sure PREFIX/bin is in +*** your path, or set the GSL_CONFIG environment variable to the +*** full path to gsl-config. +configure: error: Cannot find Gnu Scientific Library >=1.6 +ERROR: configuration failed for package ‘iBMQ’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/iBMQ/new/iBMQ.Rcheck/iBMQ’ + +``` +### CRAN + +``` +* installing *source* package ‘iBMQ’ ... +checking for gcc... clang +checking whether the C compiler works... yes +checking for C compiler default output file name... a.out +checking for suffix of executables... +checking whether we are cross compiling... no +checking for suffix of object files... o +checking whether we are using the GNU C compiler... yes +checking whether clang accepts -g... yes +checking for clang option to accept ISO C89... none needed +checking how to run the C preprocessor... clang -E +checking for pkg-config... /usr/local/bin/pkg-config +checking pkg-config is at least version 0.9.0... yes +checking for GSL... no +checking for gsl-config... no +checking for GSL - version >= 1.2... no +*** The gsl-config script installed by GSL could not be found +*** If GSL was installed in PREFIX, make sure PREFIX/bin is in +*** your path, or set the GSL_CONFIG environment variable to the +*** full path to gsl-config. +configure: error: Cannot find Gnu Scientific Library >=1.6 +ERROR: configuration failed for package ‘iBMQ’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/iBMQ/old/iBMQ.Rcheck/iBMQ’ + +``` +# iCNV + +
+ +* Version: 1.2.1 +* Source code: https://github.com/cran/iCNV +* Date/Publication: 2019-01-04 +* Number of recursive dependencies: 86 + +Run `revdep_details(,"iCNV")` for more info + +
+ +## In both + +* checking whether package ‘iCNV’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/iCNV/new/iCNV.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘iCNV’ ... +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error : package ‘BSgenome.Hsapiens.UCSC.hg19’ required by ‘CODEX’ could not be found +ERROR: lazy loading failed for package ‘iCNV’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/iCNV/new/iCNV.Rcheck/iCNV’ + +``` +### CRAN + +``` +* installing *source* package ‘iCNV’ ... +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error : package ‘BSgenome.Hsapiens.UCSC.hg19’ required by ‘CODEX’ could not be found +ERROR: lazy loading failed for package ‘iCNV’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/iCNV/old/iCNV.Rcheck/iCNV’ + +``` +# imageData + +
+ +* Version: 0.1-50 +* Source code: https://github.com/cran/imageData +* URL: http://chris.brien.name +* Date/Publication: 2018-06-11 13:25:44 UTC +* Number of recursive dependencies: 71 + +Run `revdep_details(,"imageData")` for more info + +
+ +## In both + +* checking whether package ‘imageData’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/imageData/new/imageData.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘imageData’ ... +** package ‘imageData’ successfully unpacked and MD5 sums checked +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/imageData/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/imageData/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/imageData/rJava/libs/rJava.so + Reason: image not found +ERROR: lazy loading failed for package ‘imageData’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/imageData/new/imageData.Rcheck/imageData’ + +``` +### CRAN + +``` +* installing *source* package ‘imageData’ ... +** package ‘imageData’ successfully unpacked and MD5 sums checked +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/imageData/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/imageData/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/imageData/rJava/libs/rJava.so + Reason: image not found +ERROR: lazy loading failed for package ‘imageData’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/imageData/old/imageData.Rcheck/imageData’ + +``` +# imbalance + +
+ +* Version: 1.0.0 +* Source code: https://github.com/cran/imbalance +* URL: http://github.com/ncordon/imbalance +* BugReports: http://github.com/ncordon/imbalance/issues +* Date/Publication: 2018-02-18 17:06:30 UTC +* Number of recursive dependencies: 63 + +Run `revdep_details(,"imbalance")` for more info + +
+ +## In both + +* checking whether package ‘imbalance’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/imbalance/new/imbalance.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘imbalance’ ... +** package ‘imbalance’ successfully unpacked and MD5 sums checked +** libs +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/imbalance/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/imbalance/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/imbalance/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/imbalance/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c mwmote.cpp -o mwmote.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/imbalance/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/imbalance/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c neater.cpp -o neater.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/imbalance/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/imbalance/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c pdfos.cpp -o pdfos.o +clang: error: unsupported option '-fopenmp'clang: error: unsupported option '-fopenmp'clang: error: unsupported option '-fopenmp' + + +clang: error: unsupported option '-fopenmp' +make: *** [neater.o] Error 1 +make: *** Waiting for unfinished jobs.... +make: *** [pdfos.o] Error 1 +make: *** [mwmote.o] Error 1 +make: *** [RcppExports.o] Error 1 +ERROR: compilation failed for package ‘imbalance’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/imbalance/new/imbalance.Rcheck/imbalance’ + +``` +### CRAN + +``` +* installing *source* package ‘imbalance’ ... +** package ‘imbalance’ successfully unpacked and MD5 sums checked +** libs +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/imbalance/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/imbalance/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/imbalance/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/imbalance/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c mwmote.cpp -o mwmote.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/imbalance/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/imbalance/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c neater.cpp -o neater.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/imbalance/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/imbalance/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c pdfos.cpp -o pdfos.o +clang: error: unsupported option '-fopenmp' +clang: error: unsupported option '-fopenmp' +clang: error: unsupported option '-fopenmp' +clang: error: unsupported option '-fopenmp' +make: *** [RcppExports.o] Error 1 +make: *** Waiting for unfinished jobs.... +make: *** [neater.o] Error 1 +make: *** [pdfos.o] Error 1 +make: *** [mwmote.o] Error 1 +ERROR: compilation failed for package ‘imbalance’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/imbalance/old/imbalance.Rcheck/imbalance’ + +``` +# Imetagene + +
+ +* Version: 1.12.0 +* Source code: https://github.com/cran/Imetagene +* BugReports: https://github.com/andronekomimi/Imetagene/issues +* Date/Publication: 2018-10-30 +* Number of recursive dependencies: 145 + +Run `revdep_details(,"Imetagene")` for more info + +
+ +## In both + +* checking whether package ‘Imetagene’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/Imetagene/new/Imetagene.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘Imetagene’ ... +** R +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for 'metagene' in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]): + there is no package called 'EnsDb.Hsapiens.v86' +Error : package 'metagene' could not be loaded +ERROR: lazy loading failed for package 'Imetagene' +* removing '/Users/max/github/forks/ggplot2/revdep/checks.noindex/Imetagene/new/Imetagene.Rcheck/Imetagene' + +``` +### CRAN + +``` +* installing *source* package ‘Imetagene’ ... +** R +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for 'metagene' in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]): + there is no package called 'EnsDb.Hsapiens.v86' +Error : package 'metagene' could not be loaded +ERROR: lazy loading failed for package 'Imetagene' +* removing '/Users/max/github/forks/ggplot2/revdep/checks.noindex/Imetagene/old/Imetagene.Rcheck/Imetagene' + +``` +# InSilicoVA + +
+ +* Version: 1.2.5 +* Source code: https://github.com/cran/InSilicoVA +* URL: https://github.com/verbal-autopsy-software/InSilicoVA +* BugReports: https://github.com/verbal-autopsy-software/InSilicoVA/issues +* Date/Publication: 2018-10-29 05:40:11 UTC +* Number of recursive dependencies: 36 + +Run `revdep_details(,"InSilicoVA")` for more info + +
+ +## In both + +* checking whether package ‘InSilicoVA’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/InSilicoVA/new/InSilicoVA.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘InSilicoVA’ ... +** package ‘InSilicoVA’ successfully unpacked and MD5 sums checked +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘rJava’: + .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/InSilicoVA/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/InSilicoVA/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/InSilicoVA/rJava/libs/rJava.so + Reason: image not found +Error : package ‘rJava’ could not be loaded +ERROR: lazy loading failed for package ‘InSilicoVA’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/InSilicoVA/new/InSilicoVA.Rcheck/InSilicoVA’ + +``` +### CRAN + +``` +* installing *source* package ‘InSilicoVA’ ... +** package ‘InSilicoVA’ successfully unpacked and MD5 sums checked +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘rJava’: + .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/InSilicoVA/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/InSilicoVA/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/InSilicoVA/rJava/libs/rJava.so + Reason: image not found +Error : package ‘rJava’ could not be loaded +ERROR: lazy loading failed for package ‘InSilicoVA’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/InSilicoVA/old/InSilicoVA.Rcheck/InSilicoVA’ + +``` +# jarbes + +
+ +* Version: 1.7.2 +* Source code: https://github.com/cran/jarbes +* Date/Publication: 2019-03-11 16:50:03 UTC +* Number of recursive dependencies: 59 + +Run `revdep_details(,"jarbes")` for more info + +
+ +## In both + +* checking whether package ‘jarbes’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/jarbes/new/jarbes.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘jarbes’ ... +** package ‘jarbes’ successfully unpacked and MD5 sums checked +** R +** data +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rjags', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/jarbes/rjags/libs/rjags.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/jarbes/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/jarbes/rjags/libs/rjags.so + Reason: image not found +ERROR: lazy loading failed for package ‘jarbes’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/jarbes/new/jarbes.Rcheck/jarbes’ + +``` +### CRAN + +``` +* installing *source* package ‘jarbes’ ... +** package ‘jarbes’ successfully unpacked and MD5 sums checked +** R +** data +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rjags', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/jarbes/rjags/libs/rjags.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/jarbes/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/jarbes/rjags/libs/rjags.so + Reason: image not found +ERROR: lazy loading failed for package ‘jarbes’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/jarbes/old/jarbes.Rcheck/jarbes’ + +``` +# joineRML + +
+ +* Version: 0.4.2 +* Source code: https://github.com/cran/joineRML +* URL: https://github.com/petephilipson/joineRML +* BugReports: https://github.com/graemeleehickey/joineRML/issues +* Date/Publication: 2018-05-28 23:00:22 UTC +* Number of recursive dependencies: 68 + +Run `revdep_details(,"joineRML")` for more info + +
+ +## In both + +* checking whether package ‘joineRML’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/joineRML/new/joineRML.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘joineRML’ ... +** package ‘joineRML’ successfully unpacked and MD5 sums checked +** libs +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/joineRML/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/joineRML/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/joineRML/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/joineRML/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c expW.cpp -o expW.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/joineRML/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/joineRML/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c gammaUpdate.cpp -o gammaUpdate.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/joineRML/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/joineRML/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c gammaUpdate_approx.cpp -o gammaUpdate_approx.o +clang: error: unsupported option '-fopenmp' +clang: error: unsupported option '-fopenmp' +clang: error: unsupported option '-fopenmp' +clang: error: unsupported option '-fopenmp' +make: *** [gammaUpdate_approx.o] Error 1 +make: *** Waiting for unfinished jobs.... +make: *** [gammaUpdate.o] Error 1 +make: *** [expW.o] Error 1 +make: *** [RcppExports.o] Error 1 +ERROR: compilation failed for package ‘joineRML’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/joineRML/new/joineRML.Rcheck/joineRML’ + +``` +### CRAN + +``` +* installing *source* package ‘joineRML’ ... +** package ‘joineRML’ successfully unpacked and MD5 sums checked +** libs +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/joineRML/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/joineRML/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/joineRML/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/joineRML/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c expW.cpp -o expW.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/joineRML/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/joineRML/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c gammaUpdate.cpp -o gammaUpdate.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/joineRML/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/joineRML/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c gammaUpdate_approx.cpp -o gammaUpdate_approx.o +clang: error: unsupported option '-fopenmp' +clang: error: unsupported option '-fopenmp' +clang: error: unsupported option '-fopenmp' +clang: error: unsupported option '-fopenmp' +make: *** [gammaUpdate_approx.o] Error 1 +make: *** Waiting for unfinished jobs.... +make: *** [RcppExports.o] Error 1 +make: *** [expW.o] Error 1 +make: *** [gammaUpdate.o] Error 1 +ERROR: compilation failed for package ‘joineRML’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/joineRML/old/joineRML.Rcheck/joineRML’ + +``` +# JointAI + +
+ +* Version: 0.5.0 +* Source code: https://github.com/cran/JointAI +* URL: https://nerler.github.io/JointAI +* BugReports: https://github.com/nerler/JointAI/issues +* Date/Publication: 2019-03-08 10:32:53 UTC +* Number of recursive dependencies: 70 + +Run `revdep_details(,"JointAI")` for more info + +
+ +## In both + +* checking whether package ‘JointAI’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/JointAI/new/JointAI.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘JointAI’ ... +** package ‘JointAI’ successfully unpacked and MD5 sums checked +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘rjags’: + .onLoad failed in loadNamespace() for 'rjags', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/JointAI/rjags/libs/rjags.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/JointAI/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/JointAI/rjags/libs/rjags.so + Reason: image not found +Error : package ‘rjags’ could not be loaded +ERROR: lazy loading failed for package ‘JointAI’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/JointAI/new/JointAI.Rcheck/JointAI’ + +``` +### CRAN + +``` +* installing *source* package ‘JointAI’ ... +** package ‘JointAI’ successfully unpacked and MD5 sums checked +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘rjags’: + .onLoad failed in loadNamespace() for 'rjags', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/JointAI/rjags/libs/rjags.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/JointAI/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/JointAI/rjags/libs/rjags.so + Reason: image not found +Error : package ‘rjags’ could not be loaded +ERROR: lazy loading failed for package ‘JointAI’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/JointAI/old/JointAI.Rcheck/JointAI’ + +``` +# likeLTD + +
+ +* Version: 6.3.0 +* Source code: https://github.com/cran/likeLTD +* URL: https://sites.google.com/site/baldingstatisticalgenetics/ +* Date/Publication: 2018-02-09 17:20:58 UTC +* Number of recursive dependencies: 40 + +Run `revdep_details(,"likeLTD")` for more info + +
+ +## In both + +* checking whether package ‘likeLTD’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/likeLTD/new/likeLTD.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘likeLTD’ ... +** package ‘likeLTD’ successfully unpacked and MD5 sums checked +** libs +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c gammaDist.cpp -o gammaDist.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c genetics.cpp -o genetics.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c maximizePeaks.cpp -o maximizePeaks.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c module.cpp -o module.o +clang: clang: error: unsupported option '-fopenmp'error: clang: error: unsupported option '-fopenmp'unsupported option '-fopenmp' + + +clang: error: unsupported option '-fopenmp' +make: *** [module.o] Error 1 +make: *** Waiting for unfinished jobs.... +make: *** [maximizePeaks.o] Error 1 +make: *** [genetics.o] Error 1 +make: *** [gammaDist.o] Error 1 +ERROR: compilation failed for package ‘likeLTD’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/likeLTD/new/likeLTD.Rcheck/likeLTD’ + +``` +### CRAN + +``` +* installing *source* package ‘likeLTD’ ... +** package ‘likeLTD’ successfully unpacked and MD5 sums checked +** libs +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c gammaDist.cpp -o gammaDist.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c genetics.cpp -o genetics.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c maximizePeaks.cpp -o maximizePeaks.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c module.cpp -o module.o +clang: error: unsupported option '-fopenmp'clang: error: unsupported option '-fopenmp' + +clang: error: unsupported option '-fopenmp' +clang: error: unsupported option '-fopenmp' +make: *** [module.o] Error 1 +make: *** Waiting for unfinished jobs.... +make: *** [maximizePeaks.o] Error 1 +make: *** [genetics.o] Error 1 +make: *** [gammaDist.o] Error 1 +ERROR: compilation failed for package ‘likeLTD’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/likeLTD/old/likeLTD.Rcheck/likeLTD’ + +``` +# lilikoi + +
+ +* Version: 0.1.0 +* Source code: https://github.com/cran/lilikoi +* URL: https://github.com/lanagarmire/lilikoi +* BugReports: https://github.com/lanagarmire/lilikoi/issues +* Date/Publication: 2018-07-30 11:10:03 UTC +* Number of recursive dependencies: 128 + +Run `revdep_details(,"lilikoi")` for more info + +
+ +## In both + +* checking whether package ‘lilikoi’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/lilikoi/new/lilikoi.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘lilikoi’ ... +** package ‘lilikoi’ successfully unpacked and MD5 sums checked +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/lilikoi/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/lilikoi/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/lilikoi/rJava/libs/rJava.so + Reason: image not found +ERROR: lazy loading failed for package ‘lilikoi’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/lilikoi/new/lilikoi.Rcheck/lilikoi’ + +``` +### CRAN + +``` +* installing *source* package ‘lilikoi’ ... +** package ‘lilikoi’ successfully unpacked and MD5 sums checked +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/lilikoi/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/lilikoi/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/lilikoi/rJava/libs/rJava.so + Reason: image not found +ERROR: lazy loading failed for package ‘lilikoi’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/lilikoi/old/lilikoi.Rcheck/lilikoi’ + +``` +# LINC + +
+ +* Version: +* Source code: ??? +* URL: http://ggplot2.tidyverse.org, https://github.com/tidyverse/ggplot2 +* BugReports: https://github.com/tidyverse/ggplot2/issues +* Number of recursive dependencies: 0 + +Run `revdep_details(,"")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + +installing the source packages ‘GO.db’, ‘org.Hs.eg.db’, ‘reactome.db’ + + + +``` +### CRAN + +``` + + + +installing the source packages ‘GO.db’, ‘org.Hs.eg.db’, ‘reactome.db’ + + + +``` +# llama + +
+ +* Version: 0.9.2 +* Source code: https://github.com/cran/llama +* URL: https://bitbucket.org/lkotthoff/llama +* Date/Publication: 2018-07-11 14:30:03 UTC +* Number of recursive dependencies: 46 + +Run `revdep_details(,"llama")` for more info + +
+ +## In both + +* checking whether package ‘llama’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/llama/new/llama.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘llama’ ... +** package ‘llama’ successfully unpacked and MD5 sums checked +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/llama/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/llama/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/llama/rJava/libs/rJava.so + Reason: image not found +ERROR: lazy loading failed for package ‘llama’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/llama/new/llama.Rcheck/llama’ + +``` +### CRAN + +``` +* installing *source* package ‘llama’ ... +** package ‘llama’ successfully unpacked and MD5 sums checked +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/llama/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/llama/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/llama/rJava/libs/rJava.so + Reason: image not found +ERROR: lazy loading failed for package ‘llama’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/llama/old/llama.Rcheck/llama’ + +``` +# LLSR + +
+ +* Version: 0.0.2.19 +* Source code: https://github.com/cran/LLSR +* URL: https://CRAN.R-project.org/package=LLSR +* BugReports: https://github.com/diegofcoelho/LLSR/issues +* Date/Publication: 2019-03-05 22:20:11 UTC +* Number of recursive dependencies: 51 + +Run `revdep_details(,"LLSR")` for more info + +
+ +## In both + +* checking whether package ‘LLSR’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/LLSR/new/LLSR.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘LLSR’ ... +** package ‘LLSR’ successfully unpacked and MD5 sums checked +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/LLSR/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/LLSR/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/LLSR/rJava/libs/rJava.so + Reason: image not found +ERROR: lazy loading failed for package ‘LLSR’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/LLSR/new/LLSR.Rcheck/LLSR’ + +``` +### CRAN + +``` +* installing *source* package ‘LLSR’ ... +** package ‘LLSR’ successfully unpacked and MD5 sums checked +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/LLSR/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/LLSR/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/LLSR/rJava/libs/rJava.so + Reason: image not found +ERROR: lazy loading failed for package ‘LLSR’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/LLSR/old/LLSR.Rcheck/LLSR’ + +``` +# matchingMarkets + +
+ +* Version: 1.0-1 +* Source code: https://github.com/cran/matchingMarkets +* URL: http://matchingMarkets.org, http://klein.uk +* BugReports: https://github.com/thiloklein/matchingMarkets/issues +* Date/Publication: 2019-02-04 22:40:02 UTC +* Number of recursive dependencies: 47 + +Run `revdep_details(,"matchingMarkets")` for more info + +
+ +## In both + +* checking whether package ‘matchingMarkets’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/matchingMarkets/new/matchingMarkets.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘matchingMarkets’ ... +** package ‘matchingMarkets’ successfully unpacked and MD5 sums checked +** libs +/usr/local/clang6/bin/clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppProgress/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c Options.cc -o Options.o +/usr/local/clang6/bin/clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppProgress/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o +/usr/local/clang6/bin/clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppProgress/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c System.cc -o System.o +/usr/local/clang6/bin/clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppProgress/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c kprmatcher.cc -o kprmatcher.o +In file included from System.cc:24: +In file included from ../inst/include/System.h:28: +../inst/include/inttypes.h:34:13: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +# include + ^~~~~~~~~~~~ + +In file included from Options.cc:20: +In file included from ../inst/include/Sort.h:24: +In file included from ../inst/include/Vec.h:28: +../inst/include/inttypes.h:34:13: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +# include + ^~~~~~~~~~~~ + +In file included from Options.cc:21: +../inst/include/Options.h:147:13: warning: variable 'end' is uninitialized when used here [-Wuninitialized] + if (end == NULL) + ^~~ +../inst/include/Options.h:143:19: note: initialize the variable 'end' to silence this warning + char* end; + ^ + = nullptr +../inst/include/Options.h:207:13: warning: variable 'end' is uninitialized when used here [-Wuninitialized] + if (end == NULL) + ^~~ +../inst/include/Options.h:204:20: note: initialize the variable 'end' to silence this warning + char* end; + ^ + = nullptr +../inst/include/Options.h:275:13: warning: variable 'end' is uninitialized when used here [-Wuninitialized] + if (end == NULL) + ^~~ +../inst/include/Options.h:271:20: note: initialize the variable 'end' to silence this warning + char* end; + ^ + = nullptr +In file included from System.cc:25: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp.h:74: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/sugar/sugar.hIn file included from Options.cc:24: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp.h:74: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/sugar/sugar.h:28: +/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/hash/hash.h:25:10: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +:28#include // needed with g++-4.7 to declare intptr_t + ^~~~~~~~~~~~ + +: +/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/hash/hash.h:25:10: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +#include // needed with g++-4.7 to declare intptr_t + ^~~~~~~~~~~~ + +In file included from kprmatcher.cc:41: +In file included from ../inst/include/kprmatcher.h:36: +In file included from ../inst/include/damatcher.h:36: +In file included from ../inst/include/problem.h:43: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp.h:74: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/sugar/sugar.h:28: +/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/hash/hash.h:25:10: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +#include // needed with g++-4.7 to declare intptr_t + ^~~~~~~~~~~~ + +In file included from kprmatcher.cc:41: +In file included from ../inst/include/kprmatcher.h:36: +In file included from ../inst/include/damatcher.h:36: +In file included from ../inst/include/problem.h:43: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp.h:74: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/sugar/sugar.h:28: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/hash/hash.h:25: +../inst/include/inttypes.h:34:13: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +# include + ^~~~~~~~~~~~ + +2 warnings generated. +/usr/local/clang6/bin/clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppProgress/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c params.cc -o params.o +5 warnings generated. +/usr/local/clang6/bin/clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppProgress/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c problem.cc -o problem.o +In file included from params.cc:32: +In file included from ../inst/include/Options.h:28: +../inst/include/inttypes.h:34:13: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +# include + ^~~~~~~~~~~~ + +In file included from params.cc:32: +../inst/include/Options.h:147:13: warning: variable 'end' is uninitialized when used here [-Wuninitialized] + if (end == NULL) + ^~~ +../inst/include/Options.h:143:19: note: initialize the variable 'end' to silence this warning + char* end; + ^ + = nullptr +../inst/include/Options.h:207:13: warning: variable 'end' is uninitialized when used here [-Wuninitialized] + if (end == NULL) + ^~~ +../inst/include/Options.h:204:20: note: initialize the variable 'end' to silence this warning + char* end; + ^ + = nullptr +../inst/include/Options.h:275:13: warning: variable 'end' is uninitialized when used here [-Wuninitialized] + if (end == NULL) + ^~~ +../inst/include/Options.h:271:20: note: initialize the variable 'end' to silence this warning + char* end; + ^ + = nullptr +In file included from RcppExports.cpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppArmadillo/include/RcppArmadillo.h:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp.h:74: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/sugar/sugar.h:28: +/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/hash/hash.h:25:10: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +#include // needed with g++-4.7 to declare intptr_t + ^~~~~~~~~~~~ + +In file included from RcppExports.cpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppArmadillo/include/RcppArmadillo.h:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp.h:74: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/sugar/sugar.h:28: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/hash/hash.h:25: +../inst/include/inttypes.h:34:13: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +# include + ^~~~~~~~~~~~ + +2 warnings generated. +/usr/local/clang6/bin/clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppProgress/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c rcp.cc -o rcp.o +In file included from params.cc:36: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp.h:74: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/sugar/sugar.h:28: +/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/hash/hash.h:25:10: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +#include // needed with g++-4.7 to declare intptr_t + ^~~~~~~~~~~~ + +In file included from problem.cc:36: +In file included from ../inst/include/problem.h:43: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp.h:74: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/sugar/sugar.h:28: +/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/hash/hash.h:25:10: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +#include // needed with g++-4.7 to declare intptr_t + ^~~~~~~~~~~~ + +In file included from problem.cc:36: +In file included from ../inst/include/problem.h:43: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp.h:74: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/sugar/sugar.h:28: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/hash/hash.h:25: +../inst/include/inttypes.h:34:13: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +# include + ^~~~~~~~~~~~ + +5 warnings generated. +/usr/local/clang6/bin/clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppProgress/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c rpmatcher.cc -o rpmatcher.o +In file included from rcp.cc:33: +In file included from ../inst/include/rcp.h:41: +In file included from ../inst/include/problem.h:43: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp.h:74: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/sugar/sugar.h:28: +/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/hash/hash.h:25:10: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +#include // needed with g++-4.7 to declare intptr_t + ^~~~~~~~~~~~ + +In file included from rcp.cc:33: +In file included from ../inst/include/rcp.h:41: +In file included from ../inst/include/problem.h:43: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp.h:74: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/sugar/sugar.h:28: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/hash/hash.h:25: +../inst/include/inttypes.h:34:13: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +# include + ^~~~~~~~~~~~ + +2 warnings generated. +/usr/local/clang6/bin/clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppProgress/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c runMatch.cpp -o runMatch.o +In file included from rpmatcher.cc:46: +In file included from ../inst/include/rpmatcher.h:36: +In file included from ../inst/include/damatcher.h:36: +In file included from ../inst/include/problem.h:43: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp.h:74: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/sugar/sugar.h:28: +/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/hash/hash.h:25:10: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +#include // needed with g++-4.7 to declare intptr_t + ^~~~~~~~~~~~ + +In file included from rpmatcher.cc:46: +In file included from ../inst/include/rpmatcher.h:36: +In file included from ../inst/include/damatcher.h:36: +In file included from ../inst/include/problem.h:43: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp.h:74: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/sugar/sugar.h:28: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/hash/hash.h:25: +../inst/include/inttypes.h:34:13: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +# include + ^~~~~~~~~~~~ + +2 warnings generated. +/usr/local/clang6/bin/clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppProgress/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c stabit2Mat0.cpp -o stabit2Mat0.o +In file included from runMatch.cpp:1: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp.h:74: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/sugar/sugar.h:28: +/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/hash/hash.h:25:10: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +#include // needed with g++-4.7 to declare intptr_t + ^~~~~~~~~~~~ + +In file included from runMatch.cpp:1: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp.h:74: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/sugar/sugar.h:28: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/hash/hash.h:25: +../inst/include/inttypes.h:34:13: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +# include + ^~~~~~~~~~~~ + +2 warnings generated. +/usr/local/clang6/bin/clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppProgress/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c stabit2Mat1.cpp -o stabit2Mat1.o +2 warnings generated. +/usr/local/clang6/bin/clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppProgress/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c stabit2Sel0.cpp -o stabit2Sel0.o +2 warnings generated. +/usr/local/clang6/bin/clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppProgress/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c stabit2Sel1.cpp -o stabit2Sel1.o +In file included from stabit2Mat0.cpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppArmadillo/include/RcppArmadillo.h:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp.h:74: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/sugar/sugar.h:28: +/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/hash/hash.h:25:10: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +#include // needed with g++-4.7 to declare intptr_t + ^~~~~~~~~~~~ + +In file included from stabit2Mat0.cpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppArmadillo/include/RcppArmadillo.h:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp.h:74: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/sugar/sugar.h:28: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/hash/hash.h:25: +../inst/include/inttypes.h:34:13: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +# include + ^~~~~~~~~~~~ + +In file included from stabit2Mat1.cpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppArmadillo/include/RcppArmadillo.h:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp.h:74: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/sugar/sugar.h:28: +/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/hash/hash.h:25:10: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +#include // needed with g++-4.7 to declare intptr_t + ^~~~~~~~~~~~ + +In file included from stabit2Mat1.cpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppArmadillo/include/RcppArmadillo.h:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp.h:74: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/sugar/sugar.h:28: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/hash/hash.h:25: +../inst/include/inttypes.h:34:13: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +# include + ^~~~~~~~~~~~ + +In file included from stabit2Sel0.cpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppArmadillo/include/RcppArmadillo.h:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp.h:74: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/sugar/sugar.h:28: +/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/hash/hash.h:25:10: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +#include // needed with g++-4.7 to declare intptr_t + ^~~~~~~~~~~~ + +In file included from stabit2Sel0.cpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppArmadillo/include/RcppArmadillo.h:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp.h:74: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/sugar/sugar.h:28: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/hash/hash.h:25: +../inst/include/inttypes.h:34:13: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +# include + ^~~~~~~~~~~~ + +In file included from stabit2Sel1.cpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppArmadillo/include/RcppArmadillo.h:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp.h:74: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/sugar/sugar.h:28: +/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/hash/hash.h:25:10: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +#include // needed with g++-4.7 to declare intptr_t + ^~~~~~~~~~~~ + +In file included from stabit2Sel1.cpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppArmadillo/include/RcppArmadillo.h:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp.h:74: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/sugar/sugar.h:28: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/hash/hash.h:25: +../inst/include/inttypes.h:34:13: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +# include + ^~~~~~~~~~~~ + +2 warnings generated. +/usr/local/clang6/bin/clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppProgress/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c stabit2Sel2.cpp -o stabit2Sel2.o +2 warnings generated. +/usr/local/clang6/bin/clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppProgress/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c stabitSel2.cpp -o stabitSel2.o +In file included from stabit2Sel2.cpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppArmadillo/include/RcppArmadillo.h:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp.h:74: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/sugar/sugar.h:28: +/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/hash/hash.h:25:10: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +#include // needed with g++-4.7 to declare intptr_t + ^~~~~~~~~~~~ + +In file included from stabit2Sel2.cpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppArmadillo/include/RcppArmadillo.h:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp.h:74: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/sugar/sugar.h:28: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/hash/hash.h:25: +../inst/include/inttypes.h:34:13: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +# include + ^~~~~~~~~~~~ + +In file included from stabitSel2.cpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppArmadillo/include/RcppArmadillo.h:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp.h:74: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/sugar/sugar.h:28: +/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/hash/hash.h:25:10: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +#include // needed with g++-4.7 to declare intptr_t + ^~~~~~~~~~~~ + +In file included from stabitSel2.cpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppArmadillo/include/RcppArmadillo.h:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp.h:74: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/sugar/sugar.h:28: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/hash/hash.h:25: +../inst/include/inttypes.h:34:13: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +# include + ^~~~~~~~~~~~ + +2 warnings generated. +2 warnings generated. +2 warnings generated. +2 warnings generated. +/usr/local/clang6/bin/clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o matchingMarkets.so Options.o RcppExports.o System.o kprmatcher.o params.o problem.o rcp.o rpmatcher.o runMatch.o stabit2Mat0.o stabit2Mat1.o stabit2Sel0.o stabit2Sel1.o stabit2Sel2.o stabitSel2.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -fopenmp -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation +ld: warning: text-based stub file /System/Library/Frameworks//CoreFoundation.framework/CoreFoundation.tbd and library file /System/Library/Frameworks//CoreFoundation.framework/CoreFoundation are out of sync. Falling back to library file for linking. +installing to /Users/max/github/forks/ggplot2/revdep/checks.noindex/matchingMarkets/new/matchingMarkets.Rcheck/matchingMarkets/libs +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/rJava/libs/rJava.so + Reason: image not found +ERROR: lazy loading failed for package ‘matchingMarkets’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/matchingMarkets/new/matchingMarkets.Rcheck/matchingMarkets’ + +``` +### CRAN + +``` +* installing *source* package ‘matchingMarkets’ ... +** package ‘matchingMarkets’ successfully unpacked and MD5 sums checked +** libs +/usr/local/clang6/bin/clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppProgress/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c Options.cc -o Options.o +/usr/local/clang6/bin/clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppProgress/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o +/usr/local/clang6/bin/clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppProgress/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c System.cc -o System.o +/usr/local/clang6/bin/clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppProgress/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c kprmatcher.cc -o kprmatcher.o +In file included from System.cc:24: +In file included from ../inst/include/System.h:28: +../inst/include/inttypes.h:34:13: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +# include + ^~~~~~~~~~~~ + +In file included from Options.cc:20: +In file included from ../inst/include/Sort.h:24: +In file included from ../inst/include/Vec.h:28: +../inst/include/inttypes.h:34:13: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +# include + ^~~~~~~~~~~~ + +In file included from Options.cc:21: +../inst/include/Options.h:147:13: warning: variable 'end' is uninitialized when used here [-Wuninitialized] + if (end == NULL) + ^~~ +../inst/include/Options.h:143:19: note: initialize the variable 'end' to silence this warning + char* end; + ^ + = nullptr +../inst/include/Options.h:207:13: warning: variable 'end' is uninitialized when used here [-Wuninitialized] + if (end == NULL) + ^~~ +../inst/include/Options.h:204:20: note: initialize the variable 'end' to silence this warning + char* end; + ^ + = nullptr +../inst/include/Options.h:275:13: warning: variable 'end' is uninitialized when used here [-Wuninitialized] + if (end == NULL) + ^~~ +../inst/include/Options.h:271:20: note: initialize the variable 'end' to silence this warning + char* end; + ^ + = nullptr +In file included from kprmatcher.cc:41: +In file included from ../inst/include/kprmatcher.h:36: +In file included from ../inst/include/damatcher.h:36: +In file included from ../inst/include/problem.h:43: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp.h:74: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/sugar/sugar.h:28: +/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/hash/hash.h:25:10: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +#include // needed with g++-4.7 to declare intptr_t + ^~~~~~~~~~~~ + +In file included from kprmatcher.cc:41: +In file included from ../inst/include/kprmatcher.h:36: +In file included from ../inst/include/damatcher.h:36: +In file included from ../inst/include/problem.h:43: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp.h:74: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/sugar/sugar.h:28: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/hash/hash.h:25: +../inst/include/inttypes.h:34:13: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +# include + ^~~~~~~~~~~~ + +In file included from System.cc:25: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp.h:74: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/sugar/sugar.h:28: +/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/hash/hash.h:25:10: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +#include // needed with g++-4.7 to declare intptr_t + ^~~~~~~~~~~~ + +In file included from Options.cc:24: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp.h:74: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/sugar/sugar.h:28: +/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/hash/hash.h:25:10: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +#include // needed with g++-4.7 to declare intptr_t + ^~~~~~~~~~~~ + +2 warnings generated. +/usr/local/clang6/bin/clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppProgress/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c params.cc -o params.o +5 warnings generated. +/usr/local/clang6/bin/clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppProgress/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c problem.cc -o problem.o +In file included from params.cc:32: +In file included from ../inst/include/Options.h:28: +../inst/include/inttypes.h:34:13: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +# include + ^~~~~~~~~~~~ + +In file included from params.cc:32: +../inst/include/Options.h:147:13: warning: variable 'end' is uninitialized when used here [-Wuninitialized] + if (end == NULL) + ^~~ +../inst/include/Options.h:143:19: note: initialize the variable 'end' to silence this warning + char* end; + ^ + = nullptr +../inst/include/Options.h:207:13: warning: variable 'end' is uninitialized when used here [-Wuninitialized] + if (end == NULL) + ^~~ +../inst/include/Options.h:204:20: note: initialize the variable 'end' to silence this warning + char* end; + ^ + = nullptr +../inst/include/Options.h:275:13: warning: variable 'end' is uninitialized when used here [-Wuninitialized] + if (end == NULL) + ^~~ +../inst/include/Options.h:271:20: note: initialize the variable 'end' to silence this warning + char* end; + ^ + = nullptr +In file included from RcppExports.cpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppArmadillo/include/RcppArmadillo.h:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp.h:74: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/sugar/sugar.h:28: +/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/hash/hash.h:25:10: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +#include // needed with g++-4.7 to declare intptr_t + ^~~~~~~~~~~~ + +In file included from RcppExports.cpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppArmadillo/include/RcppArmadillo.h:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp.h:74: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/sugar/sugar.h:28: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/hash/hash.h:25: +../inst/include/inttypes.h:34:13: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +# include + ^~~~~~~~~~~~ + +2 warnings generated. +/usr/local/clang6/bin/clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppProgress/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c rcp.cc -o rcp.o +In file included from params.cc:36: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp.h:74: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/sugar/sugar.h:28: +/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/hash/hash.h:25:10: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +#include // needed with g++-4.7 to declare intptr_t + ^~~~~~~~~~~~ + +In file included from problem.cc:36: +In file included from ../inst/include/problem.h:43: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp.h:74: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/sugar/sugar.h:28: +/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/hash/hash.h:25:10: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +#include // needed with g++-4.7 to declare intptr_t + ^~~~~~~~~~~~ + +In file included from problem.cc:36: +In file included from ../inst/include/problem.h:43: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp.h:74: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/sugar/sugar.h:28: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/hash/hash.h:25: +../inst/include/inttypes.h:34:13: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +# include + ^~~~~~~~~~~~ + +5 warnings generated. +/usr/local/clang6/bin/clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppProgress/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c rpmatcher.cc -o rpmatcher.o +In file included from rcp.cc:33: +In file included from ../inst/include/rcp.h:41: +In file included from ../inst/include/problem.h:43: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp.h:74: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/sugar/sugar.h:28: +/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/hash/hash.h:25:10: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +#include // needed with g++-4.7 to declare intptr_t + ^~~~~~~~~~~~ + +In file included from rcp.cc:33: +In file included from ../inst/include/rcp.h:41: +In file included from ../inst/include/problem.h:43: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp.h:74: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/sugar/sugar.h:28: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/hash/hash.h:25: +../inst/include/inttypes.h:34:13: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +# include + ^~~~~~~~~~~~ + +2 warnings generated. +/usr/local/clang6/bin/clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppProgress/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c runMatch.cpp -o runMatch.o +In file included from rpmatcher.cc:46: +In file included from ../inst/include/rpmatcher.h:36: +In file included from ../inst/include/damatcher.h:36: +In file included from ../inst/include/problem.h:43: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp.h:74: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/sugar/sugar.h:28: +/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/hash/hash.h:25:10: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +#include // needed with g++-4.7 to declare intptr_t + ^~~~~~~~~~~~ + +In file included from rpmatcher.cc:46: +In file included from ../inst/include/rpmatcher.h:36: +In file included from ../inst/include/damatcher.h:36: +In file included from ../inst/include/problem.h:43: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp.h:74: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/sugar/sugar.h:28: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/hash/hash.h:25: +../inst/include/inttypes.h:34:13: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +# include + ^~~~~~~~~~~~ + +2 warnings generated. +/usr/local/clang6/bin/clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppProgress/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c stabit2Mat0.cpp -o stabit2Mat0.o +In file included from runMatch.cpp:1: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp.h:74: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/sugar/sugar.h:28: +/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/hash/hash.h:25:10: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +#include // needed with g++-4.7 to declare intptr_t + ^~~~~~~~~~~~ + +In file included from runMatch.cpp:1: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp.h:74: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/sugar/sugar.h:28: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/hash/hash.h:25: +../inst/include/inttypes.h:34:13: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +# include + ^~~~~~~~~~~~ + +2 warnings generated. +/usr/local/clang6/bin/clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppProgress/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c stabit2Mat1.cpp -o stabit2Mat1.o +2 warnings generated. +/usr/local/clang6/bin/clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppProgress/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c stabit2Sel0.cpp -o stabit2Sel0.o +2 warnings generated. +/usr/local/clang6/bin/clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppProgress/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c stabit2Sel1.cpp -o stabit2Sel1.o +In file included from stabit2Mat0.cpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppArmadillo/include/RcppArmadillo.h:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp.h:74: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/sugar/sugar.h:28: +/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/hash/hash.h:25:10: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +#include // needed with g++-4.7 to declare intptr_t + ^~~~~~~~~~~~ + +In file included from stabit2Mat0.cpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppArmadillo/include/RcppArmadillo.h:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp.h:74: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/sugar/sugar.h:28: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/hash/hash.h:25: +../inst/include/inttypes.h:34:13: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +# include + ^~~~~~~~~~~~ + +In file included from stabit2Mat1.cpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppArmadillo/include/RcppArmadillo.h:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp.h:74: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/sugar/sugar.h:28: +/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/hash/hash.h:25:10: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +#include // needed with g++-4.7 to declare intptr_t + ^~~~~~~~~~~~ + +In file included from stabit2Mat1.cpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppArmadillo/include/RcppArmadillo.h:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp.h:74: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/sugar/sugar.h:28: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/hash/hash.h:25: +../inst/include/inttypes.h:34:13: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +# include + ^~~~~~~~~~~~ + +In file included from stabit2Sel0.cpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppArmadillo/include/RcppArmadillo.h:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp.h:74: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/sugar/sugar.h:28: +/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/hash/hash.h:25:10: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +#include // needed with g++-4.7 to declare intptr_t + ^~~~~~~~~~~~ + +In file included from stabit2Sel0.cpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppArmadillo/include/RcppArmadillo.h:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp.h:74: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/sugar/sugar.h:28: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/hash/hash.h:25: +../inst/include/inttypes.h:34:13: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +# include + ^~~~~~~~~~~~ + +In file included from stabit2Sel1.cpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppArmadillo/include/RcppArmadillo.h:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp.h:74: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/sugar/sugar.h:28: +/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/hash/hash.h:25:10: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +#include // needed with g++-4.7 to declare intptr_t + ^~~~~~~~~~~~ + +In file included from stabit2Sel1.cpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppArmadillo/include/RcppArmadillo.h:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp.h:74: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/sugar/sugar.h:28: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/hash/hash.h:25: +../inst/include/inttypes.h:34:13: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +# include + ^~~~~~~~~~~~ + +2 warnings generated. +/usr/local/clang6/bin/clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppProgress/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c stabit2Sel2.cpp -o stabit2Sel2.o +2 warnings generated. +/usr/local/clang6/bin/clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppProgress/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c stabitSel2.cpp -o stabitSel2.o +In file included from stabit2Sel2.cpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppArmadillo/include/RcppArmadillo.h:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp.h:74: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/sugar/sugar.h:28: +/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/hash/hash.h:25:10: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +#include // needed with g++-4.7 to declare intptr_t + ^~~~~~~~~~~~ + +In file included from stabit2Sel2.cpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppArmadillo/include/RcppArmadillo.h:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp.h:74: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/sugar/sugar.h:28: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/hash/hash.h:25: +../inst/include/inttypes.h:34:13: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +# include + ^~~~~~~~~~~~ + +In file included from stabitSel2.cpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppArmadillo/include/RcppArmadillo.h:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp.h:74: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/sugar/sugar.h:28: +/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/hash/hash.h:25:10: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +#include // needed with g++-4.7 to declare intptr_t + ^~~~~~~~~~~~ + +In file included from stabitSel2.cpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/RcppArmadillo/include/RcppArmadillo.h:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp.h:74: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/sugar/sugar.h:28: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/Rcpp/include/Rcpp/hash/hash.h:25: +../inst/include/inttypes.h:34:13: warning: non-portable path to file ''; specified path differs in case from file name on disk [-Wnonportable-include-path] +# include + ^~~~~~~~~~~~ + +2 warnings generated. +2 warnings generated. +2 warnings generated. +2 warnings generated. +/usr/local/clang6/bin/clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o matchingMarkets.so Options.o RcppExports.o System.o kprmatcher.o params.o problem.o rcp.o rpmatcher.o runMatch.o stabit2Mat0.o stabit2Mat1.o stabit2Sel0.o stabit2Sel1.o stabit2Sel2.o stabitSel2.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -fopenmp -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation +ld: warning: text-based stub file /System/Library/Frameworks//CoreFoundation.framework/CoreFoundation.tbd and library file /System/Library/Frameworks//CoreFoundation.framework/CoreFoundation are out of sync. Falling back to library file for linking. +installing to /Users/max/github/forks/ggplot2/revdep/checks.noindex/matchingMarkets/old/matchingMarkets.Rcheck/matchingMarkets/libs +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/matchingMarkets/rJava/libs/rJava.so + Reason: image not found +ERROR: lazy loading failed for package ‘matchingMarkets’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/matchingMarkets/old/matchingMarkets.Rcheck/matchingMarkets’ + +``` +# mbgraphic + +
+ +* Version: 1.0.1 +* Source code: https://github.com/cran/mbgraphic +* Date/Publication: 2019-04-28 19:20:03 UTC +* Number of recursive dependencies: 99 + +Run `revdep_details(,"mbgraphic")` for more info + +
+ +## In both + +* checking whether package ‘mbgraphic’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/mbgraphic/new/mbgraphic.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘mbgraphic’ ... +** package ‘mbgraphic’ successfully unpacked and MD5 sums checked +** libs +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/mbgraphic/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/mbgraphic/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c cmasum.cpp -o cmasum.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/mbgraphic/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c mbgraphic_init.c -o mbgraphic_init.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/mbgraphic/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c variableflip.cpp -o variableflip.o +clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o mbgraphic.so RcppExports.o cmasum.o mbgraphic_init.o variableflip.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation +ld: warning: text-based stub file /System/Library/Frameworks//CoreFoundation.framework/CoreFoundation.tbd and library file /System/Library/Frameworks//CoreFoundation.framework/CoreFoundation are out of sync. Falling back to library file for linking. +installing to /Users/max/github/forks/ggplot2/revdep/checks.noindex/mbgraphic/new/mbgraphic.Rcheck/mbgraphic/libs +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/mbgraphic/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/mbgraphic/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/mbgraphic/rJava/libs/rJava.so + Reason: image not found +ERROR: lazy loading failed for package ‘mbgraphic’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/mbgraphic/new/mbgraphic.Rcheck/mbgraphic’ + +``` +### CRAN + +``` +* installing *source* package ‘mbgraphic’ ... +** package ‘mbgraphic’ successfully unpacked and MD5 sums checked +** libs +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/mbgraphic/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/mbgraphic/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c cmasum.cpp -o cmasum.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/mbgraphic/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c mbgraphic_init.c -o mbgraphic_init.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/mbgraphic/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c variableflip.cpp -o variableflip.o +clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o mbgraphic.so RcppExports.o cmasum.o mbgraphic_init.o variableflip.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation +ld: warning: text-based stub file /System/Library/Frameworks//CoreFoundation.framework/CoreFoundation.tbd and library file /System/Library/Frameworks//CoreFoundation.framework/CoreFoundation are out of sync. Falling back to library file for linking. +installing to /Users/max/github/forks/ggplot2/revdep/checks.noindex/mbgraphic/old/mbgraphic.Rcheck/mbgraphic/libs +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/mbgraphic/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/mbgraphic/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/mbgraphic/rJava/libs/rJava.so + Reason: image not found +ERROR: lazy loading failed for package ‘mbgraphic’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/mbgraphic/old/mbgraphic.Rcheck/mbgraphic’ + +``` +# mcmcabn + +
+ +* Version: 0.1 +* Source code: https://github.com/cran/mcmcabn +* URL: https://www.math.uzh.ch/pages/mcmcabn/ +* BugReports: https://git.math.uzh.ch/gkratz/mcmcabn/issues +* Date/Publication: 2019-03-08 17:10:03 UTC +* Number of recursive dependencies: 90 + +Run `revdep_details(,"mcmcabn")` for more info + +
+ +## In both + +* checking whether package ‘mcmcabn’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/mcmcabn/new/mcmcabn.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘mcmcabn’ ... +** package ‘mcmcabn’ successfully unpacked and MD5 sums checked +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rjags', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/mcmcabn/rjags/libs/rjags.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/mcmcabn/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/mcmcabn/rjags/libs/rjags.so + Reason: image not found +ERROR: lazy loading failed for package ‘mcmcabn’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/mcmcabn/new/mcmcabn.Rcheck/mcmcabn’ + +``` +### CRAN + +``` +* installing *source* package ‘mcmcabn’ ... +** package ‘mcmcabn’ successfully unpacked and MD5 sums checked +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rjags', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/mcmcabn/rjags/libs/rjags.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/mcmcabn/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/mcmcabn/rjags/libs/rjags.so + Reason: image not found +ERROR: lazy loading failed for package ‘mcmcabn’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/mcmcabn/old/mcmcabn.Rcheck/mcmcabn’ + +``` +# MEAL + +
+ +* Version: +* Source code: ??? +* URL: http://ggplot2.tidyverse.org, https://github.com/tidyverse/ggplot2 +* BugReports: https://github.com/tidyverse/ggplot2/issues +* Number of recursive dependencies: 0 + +Run `revdep_details(,"")` for more info + +
+ +## Error before installation + +### Devel + +``` + These will not be installed + + +Packages which are only available in source form, and may need + compilation of C/C++/Fortran: ‘FDb.InfiniumMethylation.hg19’ + ‘IlluminaHumanMethylation450kmanifest’ +installing the source packages ‘DMRcatedata’, ‘GO.db’, ‘IlluminaHumanMethylation450kanno.ilmn12.hg19’, ‘IlluminaHumanMethylationEPICanno.ilm10b2.hg19’, ‘IlluminaHumanMethylationEPICanno.ilm10b4.hg19’, ‘IlluminaHumanMethylationEPICmanifest’, ‘minfiData’, ‘org.Hs.eg.db’, ‘TxDb.Hsapiens.UCSC.hg19.knownGene’ + + + +``` +### CRAN + +``` + These will not be installed + + +Packages which are only available in source form, and may need + compilation of C/C++/Fortran: ‘FDb.InfiniumMethylation.hg19’ + ‘IlluminaHumanMethylation450kmanifest’ +installing the source packages ‘DMRcatedata’, ‘GO.db’, ‘IlluminaHumanMethylation450kanno.ilmn12.hg19’, ‘IlluminaHumanMethylationEPICanno.ilm10b2.hg19’, ‘IlluminaHumanMethylationEPICanno.ilm10b4.hg19’, ‘IlluminaHumanMethylationEPICmanifest’, ‘minfiData’, ‘org.Hs.eg.db’, ‘TxDb.Hsapiens.UCSC.hg19.knownGene’ + + + +``` +# methylGSA + +
+ +* Version: +* Source code: ??? +* URL: http://ggplot2.tidyverse.org, https://github.com/tidyverse/ggplot2 +* BugReports: https://github.com/tidyverse/ggplot2/issues +* Number of recursive dependencies: 0 + +Run `revdep_details(,"")` for more info + +
+ +## Error before installation + +### Devel + +``` + These will not be installed + + +Packages which are only available in source form, and may need + compilation of C/C++/Fortran: ‘FDb.InfiniumMethylation.hg19’ + ‘IlluminaHumanMethylation450kmanifest’ +installing the source packages ‘GO.db’, ‘IlluminaHumanMethylation450kanno.ilmn12.hg19’, ‘IlluminaHumanMethylationEPICanno.ilm10b2.hg19’, ‘IlluminaHumanMethylationEPICanno.ilm10b4.hg19’, ‘IlluminaHumanMethylationEPICmanifest’, ‘org.Hs.eg.db’, ‘reactome.db’, ‘TxDb.Hsapiens.UCSC.hg19.knownGene’ + + + +``` +### CRAN + +``` + These will not be installed + + +Packages which are only available in source form, and may need + compilation of C/C++/Fortran: ‘FDb.InfiniumMethylation.hg19’ + ‘IlluminaHumanMethylation450kmanifest’ +installing the source packages ‘GO.db’, ‘IlluminaHumanMethylation450kanno.ilmn12.hg19’, ‘IlluminaHumanMethylationEPICanno.ilm10b2.hg19’, ‘IlluminaHumanMethylationEPICanno.ilm10b4.hg19’, ‘IlluminaHumanMethylationEPICmanifest’, ‘org.Hs.eg.db’, ‘reactome.db’, ‘TxDb.Hsapiens.UCSC.hg19.knownGene’ + + + +``` +# mleap + +
+ +* Version: 0.1.3 +* Source code: https://github.com/cran/mleap +* URL: https://github.com/rstudio/mleap +* BugReports: https://github.com/rstudio/mleap/issues +* Date/Publication: 2018-11-01 09:40:03 UTC +* Number of recursive dependencies: 69 + +Run `revdep_details(,"mleap")` for more info + +
+ +## In both + +* checking whether package ‘mleap’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/mleap/new/mleap.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘mleap’ ... +** package ‘mleap’ successfully unpacked and MD5 sums checked +** R +** inst +** byte-compile and prepare package for lazy loading +** help +*** installing help indices +** building package indices +** testing if installed package can be loaded +Error: package or namespace load failed for ‘mleap’: + .onLoad failed in loadNamespace() for 'mleap', details: + call: NULL + error: .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/mleap/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/mleap/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/mleap/rJava/libs/rJava.so + Reason: image not found +Error: loading failed +Execution halted +ERROR: loading failed +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/mleap/new/mleap.Rcheck/mleap’ + +``` +### CRAN + +``` +* installing *source* package ‘mleap’ ... +** package ‘mleap’ successfully unpacked and MD5 sums checked +** R +** inst +** byte-compile and prepare package for lazy loading +** help +*** installing help indices +** building package indices +** testing if installed package can be loaded +Error: package or namespace load failed for ‘mleap’: + .onLoad failed in loadNamespace() for 'mleap', details: + call: NULL + error: .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/mleap/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/mleap/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/mleap/rJava/libs/rJava.so + Reason: image not found +Error: loading failed +Execution halted +ERROR: loading failed +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/mleap/old/mleap.Rcheck/mleap’ + +``` +# morse + +
+ +* Version: 3.2.2 +* Source code: https://github.com/cran/morse +* URL: https://cran.r-project.org/package=morse +* BugReports: https://github.com/pveber/morse +* Date/Publication: 2019-02-21 23:30:11 UTC +* Number of recursive dependencies: 59 + +Run `revdep_details(,"morse")` for more info + +
+ +## In both + +* checking whether package ‘morse’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/morse/new/morse.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘morse’ ... +** package ‘morse’ successfully unpacked and MD5 sums checked +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rjags', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/morse/rjags/libs/rjags.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/morse/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/morse/rjags/libs/rjags.so + Reason: image not found +ERROR: lazy loading failed for package ‘morse’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/morse/new/morse.Rcheck/morse’ + +``` +### CRAN + +``` +* installing *source* package ‘morse’ ... +** package ‘morse’ successfully unpacked and MD5 sums checked +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rjags', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/morse/rjags/libs/rjags.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/morse/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/morse/rjags/libs/rjags.so + Reason: image not found +ERROR: lazy loading failed for package ‘morse’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/morse/old/morse.Rcheck/morse’ + +``` +# MSnbase + +
+ +* Version: 2.8.3 +* Source code: https://github.com/cran/MSnbase +* URL: https://github.com/lgatto/MSnbase +* BugReports: https://github.com/lgatto/MSnbase/issues +* Date/Publication: 2019-01-04 +* Number of recursive dependencies: 215 + +Run `revdep_details(,"MSnbase")` for more info + +
+ +## In both + +* R CMD check timed out + + +* checking installed package size ... NOTE + ``` + installed size is 13.2Mb + sub-directories of 1Mb or more: + R 2.1Mb + data 1.9Mb + doc 7.8Mb + ``` + +* checking DESCRIPTION meta-information ... NOTE + ``` + Authors@R field gives more than one person with maintainer role: + Laurent Gatto [aut, cre] + Johannes Rainer [aut, cre] + Sebastian Gibb [aut, cre] + ``` + +* checking dependencies in R code ... NOTE + ``` + Unexported objects imported by ':::' calls: + ‘Biobase:::.showAnnotatedDataFrame’ ‘MALDIquant:::.estimateNoise’ + ‘MALDIquant:::.localMaxima’ ‘MALDIquant:::.movingAverage’ + ‘MALDIquant:::.savitzkyGolay’ + ‘S4Vectors:::makeClassinfoRowForCompactPrinting’ + ‘S4Vectors:::makePrettyMatrixForCompactPrinting’ + ‘mzR:::.hasChromatograms’ ‘mzR:::.hasSpectra’ + See the note in ?`:::` about the use of this operator. + ``` + +# mwaved + +
+ +* Version: 1.1.6 +* Source code: https://github.com/cran/mwaved +* URL: https://github.com/jrwishart/mwaved +* BugReports: https://github.com/jrwishart/mwaved/issues +* Date/Publication: 2019-03-22 22:10:03 UTC +* Number of recursive dependencies: 55 + +Run `revdep_details(,"mwaved")` for more info + +
+ +## In both + +* checking whether package ‘mwaved’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/mwaved/new/mwaved.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘mwaved’ ... +** package ‘mwaved’ successfully unpacked and MD5 sums checked +checking for Rscript... yes +configure: Checking if FFTW3 library is available using pkg-config +checking for pkg-config... /usr/local/bin/pkg-config +checking pkg-config is at least version 0.9.0... yes +checking for FFTW... no +FFTW library not found, please install fftw-3-3-3 or greater +configure: creating ./config.status +config.status: creating src/Makevars +** libs +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/mwaved/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/mwaved/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c mwaved.cpp -o mwaved.o +mwaved.cpp:1:10: fatal error: 'fftw3.h' file not found +#include + ^~~~~~~~~ +1 error generated. +make: *** [mwaved.o] Error 1 +make: *** Waiting for unfinished jobs.... +ERROR: compilation failed for package ‘mwaved’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/mwaved/new/mwaved.Rcheck/mwaved’ + +``` +### CRAN + +``` +* installing *source* package ‘mwaved’ ... +** package ‘mwaved’ successfully unpacked and MD5 sums checked +checking for Rscript... yes +configure: Checking if FFTW3 library is available using pkg-config +checking for pkg-config... /usr/local/bin/pkg-config +checking pkg-config is at least version 0.9.0... yes +checking for FFTW... no +FFTW library not found, please install fftw-3-3-3 or greater +configure: creating ./config.status +config.status: creating src/Makevars +** libs +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/mwaved/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/mwaved/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c mwaved.cpp -o mwaved.o +mwaved.cpp:1:10: fatal error: 'fftw3.h' file not found +#include + ^~~~~~~~~ +1 error generated. +make: *** [mwaved.o] Error 1 +make: *** Waiting for unfinished jobs.... +ERROR: compilation failed for package ‘mwaved’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/mwaved/old/mwaved.Rcheck/mwaved’ + +``` +# NPflow + +
+ +* Version: 0.13.1 +* Source code: https://github.com/cran/NPflow +* BugReports: https://github.com/borishejblum/NPflow/issues +* Date/Publication: 2017-08-02 18:42:55 UTC +* Number of recursive dependencies: 50 + +Run `revdep_details(,"NPflow")` for more info + +
+ +## In both + +* checking whether package ‘NPflow’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/NPflow/new/NPflow.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘NPflow’ ... +** package ‘NPflow’ successfully unpacked and MD5 sums checked +** libs +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/NPflow/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/NPflow/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c FmeasureC.cpp -o FmeasureC.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/NPflow/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/NPflow/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c NuMatParC.cpp -o NuMatParC.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/NPflow/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/NPflow/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/NPflow/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/NPflow/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c TraceEpsC.cpp -o TraceEpsC.o +clang: error: unsupported option '-fopenmp'clang: error: unsupported option '-fopenmp' +clang: error: unsupported option '-fopenmp' + +clang: error: unsupported option '-fopenmp' +make: *** [TraceEpsC.o] Error 1 +make: *** Waiting for unfinished jobs.... +make: *** [RcppExports.o] Error 1 +make: *** [NuMatParC.o] Error 1 +make: *** [FmeasureC.o] Error 1 +ERROR: compilation failed for package ‘NPflow’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/NPflow/new/NPflow.Rcheck/NPflow’ + +``` +### CRAN + +``` +* installing *source* package ‘NPflow’ ... +** package ‘NPflow’ successfully unpacked and MD5 sums checked +** libs +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/NPflow/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/NPflow/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c FmeasureC.cpp -o FmeasureC.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/NPflow/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/NPflow/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c NuMatParC.cpp -o NuMatParC.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/NPflow/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/NPflow/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/NPflow/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/NPflow/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c TraceEpsC.cpp -o TraceEpsC.o +clang: error: unsupported option '-fopenmp' +clang: error: unsupported option '-fopenmp' +clang: error: unsupported option '-fopenmp' +make: *** [RcppExports.o] Error 1 +make: *** Waiting for unfinished jobs.... +make: *** [NuMatParC.o] Error 1 +make: *** [FmeasureC.o] Error 1 +clang: error: unsupported option '-fopenmp' +make: *** [TraceEpsC.o] Error 1 +ERROR: compilation failed for package ‘NPflow’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/NPflow/old/NPflow.Rcheck/NPflow’ + +``` +# OpenStreetMap + +
+ +* Version: 0.3.3 +* Source code: https://github.com/cran/OpenStreetMap +* URL: http://www.fellstat.com http://blog.fellstat.com/?cat=15 +* Date/Publication: 2016-09-09 23:49:52 +* Number of recursive dependencies: 39 + +Run `revdep_details(,"OpenStreetMap")` for more info + +
+ +## In both + +* checking whether package ‘OpenStreetMap’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/OpenStreetMap/new/OpenStreetMap.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘OpenStreetMap’ ... +** package ‘OpenStreetMap’ successfully unpacked and MD5 sums checked +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/OpenStreetMap/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/OpenStreetMap/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/OpenStreetMap/rJava/libs/rJava.so + Reason: image not found +ERROR: lazy loading failed for package ‘OpenStreetMap’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/OpenStreetMap/new/OpenStreetMap.Rcheck/OpenStreetMap’ + +``` +### CRAN + +``` +* installing *source* package ‘OpenStreetMap’ ... +** package ‘OpenStreetMap’ successfully unpacked and MD5 sums checked +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/OpenStreetMap/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/OpenStreetMap/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/OpenStreetMap/rJava/libs/rJava.so + Reason: image not found +ERROR: lazy loading failed for package ‘OpenStreetMap’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/OpenStreetMap/old/OpenStreetMap.Rcheck/OpenStreetMap’ + +``` +# openVA + +
+ +* Version: 1.0.8 +* Source code: https://github.com/cran/openVA +* URL: https://github.com/verbal-autopsy-software/openVA +* BugReports: https://github.com/verbal-autopsy-software/openVA/issues +* Date/Publication: 2019-02-18 06:40:02 UTC +* Number of recursive dependencies: 40 + +Run `revdep_details(,"openVA")` for more info + +
+ +## In both + +* checking whether package ‘openVA’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/openVA/new/openVA.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘openVA’ ... +** package ‘openVA’ successfully unpacked and MD5 sums checked +** R +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/openVA/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/openVA/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/openVA/rJava/libs/rJava.so + Reason: image not found +ERROR: lazy loading failed for package ‘openVA’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/openVA/new/openVA.Rcheck/openVA’ + +``` +### CRAN + +``` +* installing *source* package ‘openVA’ ... +** package ‘openVA’ successfully unpacked and MD5 sums checked +** R +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/openVA/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/openVA/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/openVA/rJava/libs/rJava.so + Reason: image not found +ERROR: lazy loading failed for package ‘openVA’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/openVA/old/openVA.Rcheck/openVA’ + +``` +# petro.One + +
+ +* Version: 0.2.3 +* Source code: https://github.com/cran/petro.One +* URL: https://github.com/f0nzie/petro.One +* Date/Publication: 2019-01-13 16:20:03 UTC +* Number of recursive dependencies: 78 + +Run `revdep_details(,"petro.One")` for more info + +
+ +## In both + +* checking whether package ‘petro.One’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/petro.One/new/petro.One.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘petro.One’ ... +** package ‘petro.One’ successfully unpacked and MD5 sums checked +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/petro.One/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/petro.One/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/petro.One/rJava/libs/rJava.so + Reason: image not found +ERROR: lazy loading failed for package ‘petro.One’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/petro.One/new/petro.One.Rcheck/petro.One’ + +``` +### CRAN + +``` +* installing *source* package ‘petro.One’ ... +** package ‘petro.One’ successfully unpacked and MD5 sums checked +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/petro.One/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/petro.One/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/petro.One/rJava/libs/rJava.so + Reason: image not found +ERROR: lazy loading failed for package ‘petro.One’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/petro.One/old/petro.One.Rcheck/petro.One’ + +``` +# phase1PRMD + +
+ +* Version: 1.0.1 +* Source code: https://github.com/cran/phase1PRMD +* Date/Publication: 2019-02-03 17:00:03 UTC +* Number of recursive dependencies: 75 + +Run `revdep_details(,"phase1PRMD")` for more info + +
+ +## In both + +* checking whether package ‘phase1PRMD’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/phase1PRMD/new/phase1PRMD.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘phase1PRMD’ ... +** package ‘phase1PRMD’ successfully unpacked and MD5 sums checked +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rjags', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/phase1PRMD/rjags/libs/rjags.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/phase1PRMD/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/phase1PRMD/rjags/libs/rjags.so + Reason: image not found +ERROR: lazy loading failed for package ‘phase1PRMD’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/phase1PRMD/new/phase1PRMD.Rcheck/phase1PRMD’ + +``` +### CRAN + +``` +* installing *source* package ‘phase1PRMD’ ... +** package ‘phase1PRMD’ successfully unpacked and MD5 sums checked +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rjags', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/phase1PRMD/rjags/libs/rjags.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/phase1PRMD/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/phase1PRMD/rjags/libs/rjags.so + Reason: image not found +ERROR: lazy loading failed for package ‘phase1PRMD’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/phase1PRMD/old/phase1PRMD.Rcheck/phase1PRMD’ + +``` +# phase1RMD + +
+ +* Version: 1.0.8 +* Source code: https://github.com/cran/phase1RMD +* Date/Publication: 2017-11-27 08:49:15 UTC +* Number of recursive dependencies: 47 + +Run `revdep_details(,"phase1RMD")` for more info + +
+ +## In both + +* checking whether package ‘phase1RMD’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/phase1RMD/new/phase1RMD.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘phase1RMD’ ... +** package ‘phase1RMD’ successfully unpacked and MD5 sums checked +** R +** data +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘rjags’: + .onLoad failed in loadNamespace() for 'rjags', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/phase1RMD/rjags/libs/rjags.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/phase1RMD/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/phase1RMD/rjags/libs/rjags.so + Reason: image not found +Error : package ‘rjags’ could not be loaded +ERROR: lazy loading failed for package ‘phase1RMD’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/phase1RMD/new/phase1RMD.Rcheck/phase1RMD’ + +``` +### CRAN + +``` +* installing *source* package ‘phase1RMD’ ... +** package ‘phase1RMD’ successfully unpacked and MD5 sums checked +** R +** data +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘rjags’: + .onLoad failed in loadNamespace() for 'rjags', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/phase1RMD/rjags/libs/rjags.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/phase1RMD/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/phase1RMD/rjags/libs/rjags.so + Reason: image not found +Error : package ‘rjags’ could not be loaded +ERROR: lazy loading failed for package ‘phase1RMD’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/phase1RMD/old/phase1RMD.Rcheck/phase1RMD’ + +``` +# pimeta + +
+ +* Version: 1.1.2 +* Source code: https://github.com/cran/pimeta +* Date/Publication: 2019-03-11 08:40:03 UTC +* Number of recursive dependencies: 46 + +Run `revdep_details(,"pimeta")` for more info + +
+ +## In both + +* checking whether package ‘pimeta’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/pimeta/new/pimeta.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘pimeta’ ... +** package ‘pimeta’ successfully unpacked and MD5 sums checked +** libs +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/pimeta/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/pimeta/RcppEigen/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/pimeta/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/pimeta/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c init.c -o init.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/pimeta/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/pimeta/RcppEigen/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c pi-boot.cpp -o pi-boot.o +clang: error: unsupported option '-fopenmp' +clang: error: unsupported option '-fopenmp' +make: *** [RcppExports.o] Error 1 +make: *** Waiting for unfinished jobs.... +make: *** [pi-boot.o] Error 1 +ERROR: compilation failed for package ‘pimeta’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/pimeta/new/pimeta.Rcheck/pimeta’ + +``` +### CRAN + +``` +* installing *source* package ‘pimeta’ ... +** package ‘pimeta’ successfully unpacked and MD5 sums checked +** libs +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/pimeta/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/pimeta/RcppEigen/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/pimeta/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/pimeta/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c init.c -o init.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/pimeta/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/pimeta/RcppEigen/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c pi-boot.cpp -o pi-boot.o +clang: error: unsupported option '-fopenmp' +clang: error: unsupported option '-fopenmp' +make: *** [pi-boot.o] Error 1 +make: *** Waiting for unfinished jobs.... +make: *** [RcppExports.o] Error 1 +ERROR: compilation failed for package ‘pimeta’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/pimeta/old/pimeta.Rcheck/pimeta’ + +``` +# poppr + +
+ +* Version: 2.8.2 +* Source code: https://github.com/cran/poppr +* URL: https://github.com/grunwaldlab/poppr, https://grunwaldlab.github.io/poppr, https://grunwaldlab.github.io/Population_Genetics_in_R/ +* BugReports: https://github.com/grunwaldlab/poppr/issues +* Date/Publication: 2019-03-11 10:30:03 UTC +* Number of recursive dependencies: 94 + +Run `revdep_details(,"poppr")` for more info + +
+ +## In both + +* checking whether package ‘poppr’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/poppr/new/poppr.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘poppr’ ... +** package ‘poppr’ successfully unpacked and MD5 sums checked +** libs +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c adjust_missing.c -o adjust_missing.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c bitwise_distance.c -o bitwise_distance.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c init.c -o init.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c mlg_clustering.c -o mlg_clustering.o +clang: error: unsupported option '-fopenmp' +clang: error: unsupported option '-fopenmp' +clangclang: : error: unsupported option '-fopenmp' +error: unsupported option '-fopenmp' +make: *** [mlg_clustering.o] Error 1 +make: *** Waiting for unfinished jobs.... +make: *** [init.o] Error 1 +make: *** [bitwise_distance.o] Error 1 +make: *** [adjust_missing.o] Error 1 +ERROR: compilation failed for package ‘poppr’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/poppr/new/poppr.Rcheck/poppr’ + +``` +### CRAN + +``` +* installing *source* package ‘poppr’ ... +** package ‘poppr’ successfully unpacked and MD5 sums checked +** libs +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c adjust_missing.c -o adjust_missing.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c bitwise_distance.c -o bitwise_distance.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c init.c -o init.o +clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c mlg_clustering.c -o mlg_clustering.o +clang: error: unsupported option '-fopenmp'clang: error: unsupported option '-fopenmp' + +clang: error: unsupported option '-fopenmp' +make: *** [bitwise_distance.o] Error 1 +make: *** Waiting for unfinished jobs.... +make: *** [adjust_missing.o] Error 1 +make: *** [init.o] Error 1 +clang: error: unsupported option '-fopenmp' +make: *** [mlg_clustering.o] Error 1 +ERROR: compilation failed for package ‘poppr’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/poppr/old/poppr.Rcheck/poppr’ + +``` +# PortfolioEffectHFT + +
+ +* Version: 1.8 +* Source code: https://github.com/cran/PortfolioEffectHFT +* URL: https://www.portfolioeffect.com/ +* Date/Publication: 2017-03-24 19:54:25 UTC +* Number of recursive dependencies: 37 + +Run `revdep_details(,"PortfolioEffectHFT")` for more info + +
+ +## In both + +* checking whether package ‘PortfolioEffectHFT’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/PortfolioEffectHFT/new/PortfolioEffectHFT.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘PortfolioEffectHFT’ ... +** package ‘PortfolioEffectHFT’ successfully unpacked and MD5 sums checked +** R +** data +*** moving datasets to lazyload DB +** demo +** inst +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/PortfolioEffectHFT/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/PortfolioEffectHFT/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/PortfolioEffectHFT/rJava/libs/rJava.so + Reason: image not found +ERROR: lazy loading failed for package ‘PortfolioEffectHFT’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/PortfolioEffectHFT/new/PortfolioEffectHFT.Rcheck/PortfolioEffectHFT’ + +``` +### CRAN + +``` +* installing *source* package ‘PortfolioEffectHFT’ ... +** package ‘PortfolioEffectHFT’ successfully unpacked and MD5 sums checked +** R +** data +*** moving datasets to lazyload DB +** demo +** inst +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/PortfolioEffectHFT/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/PortfolioEffectHFT/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/PortfolioEffectHFT/rJava/libs/rJava.so + Reason: image not found +ERROR: lazy loading failed for package ‘PortfolioEffectHFT’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/PortfolioEffectHFT/old/PortfolioEffectHFT.Rcheck/PortfolioEffectHFT’ + +``` +# psygenet2r + +
+ +* Version: 1.14.0 +* Source code: https://github.com/cran/psygenet2r +* Date/Publication: 2018-10-30 +* Number of recursive dependencies: 81 + +Run `revdep_details(,"psygenet2r")` for more info + +
+ +## In both + +* R CMD check timed out + + +* checking whether package ‘psygenet2r’ can be installed ... WARNING + ``` + Found the following significant warnings: + Note: possible error in 'psygenetGene(x, databse = "ALL")': unused argument (databse = "ALL") + Note: possible error in 'psygenetGene(x, databse = "ALL", ': unused argument (databse = "ALL") + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/psygenet2r/new/psygenet2r.Rcheck/00install.out’ for details. + Information on the location(s) of code generating the ‘Note’s can be + obtained by re-running with environment variable R_KEEP_PKG_SOURCE set + to ‘yes’. + ``` + +* checking installed package size ... NOTE + ``` + installed size is 5.7Mb + sub-directories of 1Mb or more: + doc 5.1Mb + ``` + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘GO.db’ + All declared Imports should be used. + package 'methods' is used but not declared + ``` + +* checking R code for possible problems ... NOTE + ``` + ... + ‘Disease1’ + plot,JaccardIndexPsy-ANY: no visible binding for global variable + ‘Disease2’ + plot,JaccardIndexPsy-ANY: no visible binding for global variable + ‘JaccardIndex’ + plot,JaccardIndexPsy-ANY: no visible binding for global variable + ‘value’ + plot,JaccardIndexPsy-ANY: no visible binding for global variable + ‘variable’ + Undefined global functions or variables: + Category Disease1 Disease2 JaccardIndex Var1 c0.Number_of_Abstracts + c0.Score c1.Gene_Symbol c2.DiseaseName c2.PsychiatricDisorder + category combn database diseases gene new perc phyper pie read.csv + read.delim universe value variable + Consider adding + importFrom("graphics", "pie") + importFrom("methods", "new") + importFrom("stats", "phyper") + importFrom("utils", "combn", "read.csv", "read.delim") + to your NAMESPACE file (and ensure that your DESCRIPTION Imports field + contains 'methods'). + ``` + +# qdap + +
+ +* Version: 2.3.2 +* Source code: https://github.com/cran/qdap +* URL: http://trinker.github.com/qdap/ +* BugReports: http://github.com/trinker/qdap/issues +* Date/Publication: 2019-01-02 13:40:07 UTC +* Number of recursive dependencies: 86 + +Run `revdep_details(,"qdap")` for more info + +
+ +## In both + +* checking whether package ‘qdap’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/qdap/new/qdap.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘qdap’ ... +** package ‘qdap’ successfully unpacked and MD5 sums checked +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/qdap/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/qdap/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/qdap/rJava/libs/rJava.so + Reason: image not found +ERROR: lazy loading failed for package ‘qdap’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/qdap/new/qdap.Rcheck/qdap’ + +``` +### CRAN + +``` +* installing *source* package ‘qdap’ ... +** package ‘qdap’ successfully unpacked and MD5 sums checked +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/qdap/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/qdap/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/qdap/rJava/libs/rJava.so + Reason: image not found +ERROR: lazy loading failed for package ‘qdap’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/qdap/old/qdap.Rcheck/qdap’ + +``` +# rcellminer + +
+ +* Version: 2.4.0 +* Source code: https://github.com/cran/rcellminer +* URL: http://discover.nci.nih.gov/cellminer/ +* Date/Publication: 2018-10-30 +* Number of recursive dependencies: 110 + +Run `revdep_details(,"rcellminer")` for more info + +
+ +## In both + +* checking whether package ‘rcellminer’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/rcellminer/new/rcellminer.Rcheck/00install.out’ for details. + ``` + +* checking for hidden files and directories ... NOTE + ``` + Found the following hidden files and directories: + .BBSoptions + These were most likely included in error. See section ‘Package + structure’ in the ‘Writing R Extensions’ manual. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘rcellminer’ ... +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘rJava’: + .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/rcellminer/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/rcellminer/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/rcellminer/rJava/libs/rJava.so + Reason: image not found +Error : package ‘rJava’ could not be loaded +ERROR: lazy loading failed for package ‘rcellminer’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/rcellminer/new/rcellminer.Rcheck/rcellminer’ + +``` +### CRAN + +``` +* installing *source* package ‘rcellminer’ ... +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘rJava’: + .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/rcellminer/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/rcellminer/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/rcellminer/rJava/libs/rJava.so + Reason: image not found +Error : package ‘rJava’ could not be loaded +ERROR: lazy loading failed for package ‘rcellminer’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/rcellminer/old/rcellminer.Rcheck/rcellminer’ + +``` +# RcmdrPlugin.FuzzyClust + +
+ +* Version: 1.1 +* Source code: https://github.com/cran/RcmdrPlugin.FuzzyClust +* Date/Publication: 2016-09-04 09:36:21 +* Number of recursive dependencies: 114 + +Run `revdep_details(,"RcmdrPlugin.FuzzyClust")` for more info + +
+ +## In both + +* R CMD check timed out + + +# RDAVIDWebService + +
+ +* Version: 1.20.0 +* Source code: https://github.com/cran/RDAVIDWebService +* URL: http://www.bdmg.com.ar, http://david.abcc.ncifcrf.gov/ +* Date/Publication: 2018-10-30 +* Number of recursive dependencies: 63 + +Run `revdep_details(,"RDAVIDWebService")` for more info + +
+ +## In both + +* checking whether package ‘RDAVIDWebService’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/RDAVIDWebService/new/RDAVIDWebService.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘RDAVIDWebService’ ... +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/RDAVIDWebService/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/RDAVIDWebService/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/RDAVIDWebService/rJava/libs/rJava.so + Reason: image not found +ERROR: lazy loading failed for package ‘RDAVIDWebService’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/RDAVIDWebService/new/RDAVIDWebService.Rcheck/RDAVIDWebService’ + +``` +### CRAN + +``` +* installing *source* package ‘RDAVIDWebService’ ... +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/RDAVIDWebService/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/RDAVIDWebService/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/RDAVIDWebService/rJava/libs/rJava.so + Reason: image not found +ERROR: lazy loading failed for package ‘RDAVIDWebService’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/RDAVIDWebService/old/RDAVIDWebService.Rcheck/RDAVIDWebService’ + +``` +# Rdrools + +
+ +* Version: 1.1.1 +* Source code: https://github.com/cran/Rdrools +* Date/Publication: 2018-12-08 15:00:13 UTC +* Number of recursive dependencies: 64 + +Run `revdep_details(,"Rdrools")` for more info + +
+ +## In both + +* checking whether package ‘Rdrools’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/Rdrools/new/Rdrools.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘Rdrools’ ... +** package ‘Rdrools’ successfully unpacked and MD5 sums checked +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘rJava’: + .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/Rdrools/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/Rdrools/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/Rdrools/rJava/libs/rJava.so + Reason: image not found +Error : package ‘rJava’ could not be loaded +ERROR: lazy loading failed for package ‘Rdrools’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/Rdrools/new/Rdrools.Rcheck/Rdrools’ + +``` +### CRAN + +``` +* installing *source* package ‘Rdrools’ ... +** package ‘Rdrools’ successfully unpacked and MD5 sums checked +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘rJava’: + .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/Rdrools/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/Rdrools/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/Rdrools/rJava/libs/rJava.so + Reason: image not found +Error : package ‘rJava’ could not be loaded +ERROR: lazy loading failed for package ‘Rdrools’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/Rdrools/old/Rdrools.Rcheck/Rdrools’ + +``` +# ReactomePA + +
+ +* Version: +* Source code: ??? +* URL: http://ggplot2.tidyverse.org, https://github.com/tidyverse/ggplot2 +* BugReports: https://github.com/tidyverse/ggplot2/issues +* Number of recursive dependencies: 0 + +Run `revdep_details(,"")` for more info + +
+ +## Error before installation + +### Devel + +``` + + There is a binary version available but the source version is later: + binary source needs_compilation +checkmate 1.9.1 1.9.3 TRUE + + Binaries will be installed + + +installing the source packages ‘GO.db’, ‘org.Hs.eg.db’, ‘reactome.db’ + + + +``` +### CRAN + +``` + + There is a binary version available but the source version is later: + binary source needs_compilation +checkmate 1.9.1 1.9.3 TRUE + + Binaries will be installed + + +installing the source packages ‘GO.db’, ‘org.Hs.eg.db’, ‘reactome.db’ + + + +``` +# rmcfs + +
+ +* Version: 1.2.15 +* Source code: https://github.com/cran/rmcfs +* URL: www.ipipan.eu/staff/m.draminski/mcfs.html +* Date/Publication: 2018-10-20 18:40:03 UTC +* Number of recursive dependencies: 48 + +Run `revdep_details(,"rmcfs")` for more info + +
+ +## In both + +* checking whether package ‘rmcfs’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/rmcfs/new/rmcfs.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘rmcfs’ ... +** package ‘rmcfs’ successfully unpacked and MD5 sums checked +** R +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘rJava’: + .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/rmcfs/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/rmcfs/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/rmcfs/rJava/libs/rJava.so + Reason: image not found +Error : package ‘rJava’ could not be loaded +ERROR: lazy loading failed for package ‘rmcfs’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/rmcfs/new/rmcfs.Rcheck/rmcfs’ + +``` +### CRAN + +``` +* installing *source* package ‘rmcfs’ ... +** package ‘rmcfs’ successfully unpacked and MD5 sums checked +** R +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘rJava’: + .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/rmcfs/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/rmcfs/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/rmcfs/rJava/libs/rJava.so + Reason: image not found +Error : package ‘rJava’ could not be loaded +ERROR: lazy loading failed for package ‘rmcfs’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/rmcfs/old/rmcfs.Rcheck/rmcfs’ + +``` +# RnBeads + +
+ +* Version: 2.0.1 +* Source code: https://github.com/cran/RnBeads +* Date/Publication: 2019-01-04 +* Number of recursive dependencies: 219 + +Run `revdep_details(,"RnBeads")` for more info + +
+ +## In both + +* checking whether package ‘RnBeads’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/RnBeads/new/RnBeads.Rcheck/00install.out’ for details. + ``` + +* checking package dependencies ... NOTE + ``` + Packages suggested but not available for checking: + ‘IlluminaHumanMethylation450kmanifest’ ‘RnBeads.hg19’ ‘org.Rn.eg.db’ + ‘IlluminaHumanMethylation450kanno.ilmn12.hg19’ + + Depends: includes the non-default packages: + ‘BiocGenerics’ ‘S4Vectors’ ‘GenomicRanges’ ‘MASS’ ‘cluster’ ‘ff’ + ‘fields’ ‘ggplot2’ ‘gplots’ ‘gridExtra’ ‘limma’ ‘matrixStats’ + ‘illuminaio’ ‘methylumi’ ‘plyr’ + Adding so many packages to the search path is excessive and importing + selectively is preferable. + ``` + +* checking for hidden files and directories ... NOTE + ``` + Found the following hidden files and directories: + .travis.yml + These were most likely included in error. See section ‘Package + structure’ in the ‘Writing R Extensions’ manual. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘RnBeads’ ... +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error : package ‘FDb.InfiniumMethylation.hg19’ required by ‘methylumi’ could not be found +ERROR: lazy loading failed for package ‘RnBeads’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/RnBeads/new/RnBeads.Rcheck/RnBeads’ + +``` +### CRAN + +``` +* installing *source* package ‘RnBeads’ ... +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error : package ‘FDb.InfiniumMethylation.hg19’ required by ‘methylumi’ could not be found +ERROR: lazy loading failed for package ‘RnBeads’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/RnBeads/old/RnBeads.Rcheck/RnBeads’ + +``` +# robustHD + +
+ +* Version: 0.5.1 +* Source code: https://github.com/cran/robustHD +* Date/Publication: 2016-01-08 12:41:05 +* Number of recursive dependencies: 38 + +Run `revdep_details(,"robustHD")` for more info + +
+ +## In both + +* checking whether package ‘robustHD’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/robustHD/new/robustHD.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘robustHD’ ... +** package ‘robustHD’ successfully unpacked and MD5 sums checked +** libs +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/robustHD/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/robustHD/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c corHuber.cpp -o corHuber.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/robustHD/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/robustHD/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c fastGrplars.cpp -o fastGrplars.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/robustHD/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/robustHD/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c fastLars.cpp -o fastLars.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/robustHD/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/robustHD/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c fastLasso.cpp -o fastLasso.o +clang: error: unsupported option '-fopenmp' +clang: error: unsupported option '-fopenmp'clang: error: unsupported option '-fopenmp' + +clang: error: unsupported option '-fopenmp' +make: *** [fastGrplars.o] Error 1 +make: *** Waiting for unfinished jobs.... +make: *** [fastLasso.o] Error 1 +make: *** [fastLars.o] Error 1 +make: *** [corHuber.o] Error 1 +ERROR: compilation failed for package ‘robustHD’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/robustHD/new/robustHD.Rcheck/robustHD’ + +``` +### CRAN + +``` +* installing *source* package ‘robustHD’ ... +** package ‘robustHD’ successfully unpacked and MD5 sums checked +** libs +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/robustHD/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/robustHD/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c corHuber.cpp -o corHuber.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/robustHD/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/robustHD/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c fastGrplars.cpp -o fastGrplars.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/robustHD/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/robustHD/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c fastLars.cpp -o fastLars.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/robustHD/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/robustHD/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c fastLasso.cpp -o fastLasso.o +clang: error: unsupported option '-fopenmp' +clang: error: unsupported option '-fopenmp' +clang: error: clang: error: unsupported option '-fopenmp'unsupported option '-fopenmp' + +make: *** [corHuber.o] Error 1 +make: *** Waiting for unfinished jobs.... +make: *** [fastLasso.o] Error 1 +make: *** [fastLars.o] Error 1 +make: *** [fastGrplars.o] Error 1 +ERROR: compilation failed for package ‘robustHD’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/robustHD/old/robustHD.Rcheck/robustHD’ + +``` +# rpanel + +
+ +* Version: 1.1-4 +* Source code: https://github.com/cran/rpanel +* Date/Publication: 2018-05-07 14:58:19 UTC +* Number of recursive dependencies: 70 + +Run `revdep_details(,"rpanel")` for more info + +
+ +## In both + +* checking whether package ‘rpanel’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/rpanel/new/rpanel.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘rpanel’ ... +** package ‘rpanel’ successfully unpacked and MD5 sums checked +** R +** data +*** moving datasets to lazyload DB +** demo +** inst +** byte-compile and prepare package for lazy loading +Warning in fun(libname, pkgname) : couldn't connect to display "" +Error in structure(.External(.C_dotTcl, ...), class = "tclObj") : + [tcl] can't find package BWidget. + +Error : unable to load R code in package ‘rpanel’ +ERROR: lazy loading failed for package ‘rpanel’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/rpanel/new/rpanel.Rcheck/rpanel’ + +``` +### CRAN + +``` +* installing *source* package ‘rpanel’ ... +** package ‘rpanel’ successfully unpacked and MD5 sums checked +** R +** data +*** moving datasets to lazyload DB +** demo +** inst +** byte-compile and prepare package for lazy loading +Warning in fun(libname, pkgname) : couldn't connect to display "" +Error in structure(.External(.C_dotTcl, ...), class = "tclObj") : + [tcl] can't find package BWidget. + +Error : unable to load R code in package ‘rpanel’ +ERROR: lazy loading failed for package ‘rpanel’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/rpanel/old/rpanel.Rcheck/rpanel’ + +``` +# rpf + +
+ +* Version: 0.62 +* Source code: https://github.com/cran/rpf +* URL: https://github.com/jpritikin/rpf +* Date/Publication: 2019-04-12 19:22:43 UTC +* Number of recursive dependencies: 69 + +Run `revdep_details(,"rpf")` for more info + +
+ +## In both + +* checking whether package ‘rpf’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/rpf/new/rpf.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘rpf’ ... +** package ‘rpf’ successfully unpacked and MD5 sums checked +** libs +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/rpf/RcppEigen/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c ba81quad.cpp -o ba81quad.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/rpf/RcppEigen/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c dataframe.cpp -o dataframe.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/rpf/RcppEigen/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c diagnose.cpp -o diagnose.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/rpf/RcppEigen/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c dmvnorm.cpp -o dmvnorm.o +clang: error: unsupported option '-fopenmp' +clang: errorclang: error: clang: error: unsupported option '-fopenmp'unsupported option '-fopenmp': + +unsupported option '-fopenmp' +make: *** [diagnose.o] Error 1 +make: *** Waiting for unfinished jobs.... +make: *** [dmvnorm.o] Error 1 +make: *** [dataframe.o] Error 1 +make: *** [ba81quad.o] Error 1 +ERROR: compilation failed for package ‘rpf’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/rpf/new/rpf.Rcheck/rpf’ + +``` +### CRAN + +``` +* installing *source* package ‘rpf’ ... +** package ‘rpf’ successfully unpacked and MD5 sums checked +** libs +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/rpf/RcppEigen/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c ba81quad.cpp -o ba81quad.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/rpf/RcppEigen/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c dataframe.cpp -o dataframe.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/rpf/RcppEigen/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c diagnose.cpp -o diagnose.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/rpf/RcppEigen/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c dmvnorm.cpp -o dmvnorm.o +clang: error: unsupported option '-fopenmp'clang: error: +unsupported option '-fopenmp' +clang: error: unsupported option '-fopenmp' +clang: error: unsupported option '-fopenmp' +make: *** [dmvnorm.o] Error 1 +make: *** Waiting for unfinished jobs.... +make: *** [diagnose.o] Error 1 +make: *** [ba81quad.o] Error 1 +make: *** [dataframe.o] Error 1 +ERROR: compilation failed for package ‘rpf’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/rpf/old/rpf.Rcheck/rpf’ + +``` +# rrepast + +
+ +* Version: 0.7.0 +* Source code: https://github.com/cran/rrepast +* URL: https://github.com/antonio-pgarcia/rrepast +* BugReports: https://github.com/antonio-pgarcia/RRepast/issues +* Date/Publication: 2018-06-25 18:29:13 UTC +* Number of recursive dependencies: 44 + +Run `revdep_details(,"rrepast")` for more info + +
+ +## In both + +* checking whether package ‘rrepast’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/rrepast/new/rrepast.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘rrepast’ ... +** package ‘rrepast’ successfully unpacked and MD5 sums checked +** R +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘rJava’: + .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/rrepast/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/rrepast/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/rrepast/rJava/libs/rJava.so + Reason: image not found +Error : package ‘rJava’ could not be loaded +ERROR: lazy loading failed for package ‘rrepast’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/rrepast/new/rrepast.Rcheck/rrepast’ + +``` +### CRAN + +``` +* installing *source* package ‘rrepast’ ... +** package ‘rrepast’ successfully unpacked and MD5 sums checked +** R +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘rJava’: + .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/rrepast/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/rrepast/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/rrepast/rJava/libs/rJava.so + Reason: image not found +Error : package ‘rJava’ could not be loaded +ERROR: lazy loading failed for package ‘rrepast’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/rrepast/old/rrepast.Rcheck/rrepast’ + +``` +# RSCAT + +
+ +* Version: 1.0.0 +* Source code: https://github.com/cran/RSCAT +* BugReports: https://github.com/act-org/RSCAT/issues +* Date/Publication: 2019-04-12 08:32:42 UTC +* Number of recursive dependencies: 50 + +Run `revdep_details(,"RSCAT")` for more info + +
+ +## In both + +* checking whether package ‘RSCAT’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/RSCAT/new/RSCAT.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘RSCAT’ ... +** package ‘RSCAT’ successfully unpacked and MD5 sums checked +** R +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘rJava’: + .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/RSCAT/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/RSCAT/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/RSCAT/rJava/libs/rJava.so + Reason: image not found +Error : package ‘rJava’ could not be loaded +ERROR: lazy loading failed for package ‘RSCAT’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/RSCAT/new/RSCAT.Rcheck/RSCAT’ + +``` +### CRAN + +``` +* installing *source* package ‘RSCAT’ ... +** package ‘RSCAT’ successfully unpacked and MD5 sums checked +** R +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘rJava’: + .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/RSCAT/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/RSCAT/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/RSCAT/rJava/libs/rJava.so + Reason: image not found +Error : package ‘rJava’ could not be loaded +ERROR: lazy loading failed for package ‘RSCAT’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/RSCAT/old/RSCAT.Rcheck/RSCAT’ + +``` +# rstanarm + +
+ +* Version: 2.18.2 +* Source code: https://github.com/cran/rstanarm +* URL: http://discourse.mc-stan.org, http://mc-stan.org/, http://mc-stan.org/rstanarm/ +* BugReports: https://github.com/stan-dev/rstanarm/issues +* Date/Publication: 2018-11-10 16:30:02 UTC +* Number of recursive dependencies: 118 + +Run `revdep_details(,"rstanarm")` for more info + +
+ +## In both + +* R CMD check timed out + + +* checking installed package size ... NOTE + ``` + installed size is 17.3Mb + sub-directories of 1Mb or more: + R 2.0Mb + libs 13.7Mb + ``` + +* checking Rd cross-references ... NOTE + ``` + Package unavailable to check Rd xrefs: ‘biglm’ + ``` + +* checking for GNU extensions in Makefiles ... NOTE + ``` + GNU make is a SystemRequirements. + ``` + +# rsvg + +
+ +* Version: 1.3 +* Source code: https://github.com/cran/rsvg +* URL: https://github.com/jeroen/rsvg#readme +* BugReports: https://github.com/jeroen/rsvg/issues +* Date/Publication: 2018-05-10 12:17:28 UTC +* Number of recursive dependencies: 50 + +Run `revdep_details(,"rsvg")` for more info + +
+ +## In both + +* checking whether package ‘rsvg’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/rsvg/new/rsvg.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘rsvg’ ... +** package ‘rsvg’ successfully unpacked and MD5 sums checked +Package librsvg-2.0 was not found in the pkg-config search path. +Perhaps you should add the directory containing `librsvg-2.0.pc' +to the PKG_CONFIG_PATH environment variable +No package 'librsvg-2.0' found +Homebrew 2.1.0 +Homebrew/homebrew-core (git revision 5f500; last commit 2019-04-06) +Homebrew/homebrew-cask (git revision 2b252; last commit 2019-04-06) +Using PKG_CFLAGS=-I/usr/local/opt/librsvg/include +Using PKG_LIBS=-L/usr/local/opt/librsvg/lib -lrsvg +------------------------- ANTICONF ERROR --------------------------- +Configuration failed because librsvg-2.0 was not found. Try installing: + * deb: librsvg2-dev (Debian, Ubuntu, etc) + * rpm: librsvg2-devel (Fedora, EPEL) + * csw: librsvg_dev, sunx11_devel (Solaris) + * brew: librsvg (OSX) +If librsvg-2.0 is already installed, check that 'pkg-config' is in your +PATH and PKG_CONFIG_PATH contains a librsvg-2.0.pc file. If pkg-config +is unavailable you can set INCLUDE_DIR and LIB_DIR manually via: +R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...' +-------------------------------------------------------------------- +ERROR: configuration failed for package ‘rsvg’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/rsvg/new/rsvg.Rcheck/rsvg’ + +``` +### CRAN + +``` +* installing *source* package ‘rsvg’ ... +** package ‘rsvg’ successfully unpacked and MD5 sums checked +Package librsvg-2.0 was not found in the pkg-config search path. +Perhaps you should add the directory containing `librsvg-2.0.pc' +to the PKG_CONFIG_PATH environment variable +No package 'librsvg-2.0' found +Homebrew 2.1.0 +Homebrew/homebrew-core (git revision 5f500; last commit 2019-04-06) +Homebrew/homebrew-cask (git revision 2b252; last commit 2019-04-06) +Using PKG_CFLAGS=-I/usr/local/opt/librsvg/include +Using PKG_LIBS=-L/usr/local/opt/librsvg/lib -lrsvg +------------------------- ANTICONF ERROR --------------------------- +Configuration failed because librsvg-2.0 was not found. Try installing: + * deb: librsvg2-dev (Debian, Ubuntu, etc) + * rpm: librsvg2-devel (Fedora, EPEL) + * csw: librsvg_dev, sunx11_devel (Solaris) + * brew: librsvg (OSX) +If librsvg-2.0 is already installed, check that 'pkg-config' is in your +PATH and PKG_CONFIG_PATH contains a librsvg-2.0.pc file. If pkg-config +is unavailable you can set INCLUDE_DIR and LIB_DIR manually via: +R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...' +-------------------------------------------------------------------- +ERROR: configuration failed for package ‘rsvg’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/rsvg/old/rsvg.Rcheck/rsvg’ + +``` +# RtutoR + +
+ +* Version: 1.2 +* Source code: https://github.com/cran/RtutoR +* Date/Publication: 2018-09-14 07:50:07 UTC +* Number of recursive dependencies: 108 + +Run `revdep_details(,"RtutoR")` for more info + +
+ +## In both + +* checking whether package ‘RtutoR’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/RtutoR/new/RtutoR.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘RtutoR’ ... +** package ‘RtutoR’ successfully unpacked and MD5 sums checked +** R +** inst +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/RtutoR/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/RtutoR/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/RtutoR/rJava/libs/rJava.so + Reason: image not found +ERROR: lazy loading failed for package ‘RtutoR’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/RtutoR/new/RtutoR.Rcheck/RtutoR’ + +``` +### CRAN + +``` +* installing *source* package ‘RtutoR’ ... +** package ‘RtutoR’ successfully unpacked and MD5 sums checked +** R +** inst +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/RtutoR/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/RtutoR/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/RtutoR/rJava/libs/rJava.so + Reason: image not found +ERROR: lazy loading failed for package ‘RtutoR’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/RtutoR/old/RtutoR.Rcheck/RtutoR’ + +``` +# SeqFeatR + +
+ +* Version: 0.3.1 +* Source code: https://github.com/cran/SeqFeatR +* Date/Publication: 2019-04-12 12:02:37 UTC +* Number of recursive dependencies: 56 + +Run `revdep_details(,"SeqFeatR")` for more info + +
+ +## In both + +* checking whether package ‘SeqFeatR’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/SeqFeatR/new/SeqFeatR.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘SeqFeatR’ ... +** package ‘SeqFeatR’ successfully unpacked and MD5 sums checked +** R +** inst +** byte-compile and prepare package for lazy loading +Warning in fun(libname, pkgname) : couldn't connect to display "" +Error : .onLoad failed in loadNamespace() for 'rjags', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/SeqFeatR/rjags/libs/rjags.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/SeqFeatR/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/SeqFeatR/rjags/libs/rjags.so + Reason: image not found +ERROR: lazy loading failed for package ‘SeqFeatR’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/SeqFeatR/new/SeqFeatR.Rcheck/SeqFeatR’ + +``` +### CRAN + +``` +* installing *source* package ‘SeqFeatR’ ... +** package ‘SeqFeatR’ successfully unpacked and MD5 sums checked +** R +** inst +** byte-compile and prepare package for lazy loading +Warning in fun(libname, pkgname) : couldn't connect to display "" +Error : .onLoad failed in loadNamespace() for 'rjags', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/SeqFeatR/rjags/libs/rjags.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/SeqFeatR/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/SeqFeatR/rjags/libs/rjags.so + Reason: image not found +ERROR: lazy loading failed for package ‘SeqFeatR’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/SeqFeatR/old/SeqFeatR.Rcheck/SeqFeatR’ + +``` +# simmr + +
+ +* Version: 0.3 +* Source code: https://github.com/cran/simmr +* Date/Publication: 2016-01-19 11:57:28 +* Number of recursive dependencies: 52 + +Run `revdep_details(,"simmr")` for more info + +
+ +## In both + +* checking whether package ‘simmr’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/simmr/new/simmr.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘simmr’ ... +** package ‘simmr’ successfully unpacked and MD5 sums checked +** R +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘rjags’: + .onLoad failed in loadNamespace() for 'rjags', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/simmr/rjags/libs/rjags.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/simmr/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/simmr/rjags/libs/rjags.so + Reason: image not found +Error : package ‘rjags’ could not be loaded +ERROR: lazy loading failed for package ‘simmr’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/simmr/new/simmr.Rcheck/simmr’ + +``` +### CRAN + +``` +* installing *source* package ‘simmr’ ... +** package ‘simmr’ successfully unpacked and MD5 sums checked +** R +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘rjags’: + .onLoad failed in loadNamespace() for 'rjags', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/simmr/rjags/libs/rjags.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/simmr/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/simmr/rjags/libs/rjags.so + Reason: image not found +Error : package ‘rjags’ could not be loaded +ERROR: lazy loading failed for package ‘simmr’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/simmr/old/simmr.Rcheck/simmr’ + +``` +# sitmo + +
+ +* Version: 2.0.1 +* Source code: https://github.com/cran/sitmo +* URL: https://github.com/coatless/sitmo, http://thecoatlessprofessor.com/projects/sitmo/, https://github.com/stdfin/random/ +* BugReports: https://github.com/coatless/sitmo/issues +* Date/Publication: 2019-01-07 21:40:07 UTC +* Number of recursive dependencies: 45 + +Run `revdep_details(,"sitmo")` for more info + +
+ +## In both + +* checking whether package ‘sitmo’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/sitmo/new/sitmo.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘sitmo’ ... +** package ‘sitmo’ successfully unpacked and MD5 sums checked +** libs +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/sitmo/Rcpp/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/sitmo/Rcpp/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c sitmo_demo.cpp -o sitmo_demo.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/sitmo/Rcpp/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c sitmo_parallel.cpp -o sitmo_parallel.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/sitmo/Rcpp/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c sitmo_runif.cpp -o sitmo_runif.o +clang: error: unsupported option '-fopenmp' +clang: error: unsupported option '-fopenmp' +clang: error: unsupported option '-fopenmp' +make: clang: error: *** [sitmo_runif.o] Error 1unsupported option '-fopenmp' + +make: *** Waiting for unfinished jobs.... +make: *** [RcppExports.o] Error 1 +make: *** [sitmo_parallel.o] Error 1 +make: *** [sitmo_demo.o] Error 1 +ERROR: compilation failed for package ‘sitmo’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/sitmo/new/sitmo.Rcheck/sitmo’ + +``` +### CRAN + +``` +* installing *source* package ‘sitmo’ ... +** package ‘sitmo’ successfully unpacked and MD5 sums checked +** libs +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/sitmo/Rcpp/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/sitmo/Rcpp/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c sitmo_demo.cpp -o sitmo_demo.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/sitmo/Rcpp/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c sitmo_parallel.cpp -o sitmo_parallel.o +clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/sitmo/Rcpp/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c sitmo_runif.cpp -o sitmo_runif.o +clang: error: unsupported option '-fopenmp'clang +clang: error: clang: error: unsupported option '-fopenmp'unsupported option '-fopenmp': +error: unsupported option '-fopenmp' + +make: *** [sitmo_demo.o] Error 1 +make: *** Waiting for unfinished jobs.... +make: *** [sitmo_parallel.o] Error 1 +make: *** [RcppExports.o] Error 1 +make: *** [sitmo_runif.o] Error 1 +ERROR: compilation failed for package ‘sitmo’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/sitmo/old/sitmo.Rcheck/sitmo’ + +``` +# SMITE + +
+ +* Version: +* Source code: ??? +* URL: http://ggplot2.tidyverse.org, https://github.com/tidyverse/ggplot2 +* BugReports: https://github.com/tidyverse/ggplot2/issues +* Number of recursive dependencies: 0 + +Run `revdep_details(,"")` for more info + +
+ +## Error before installation + +### Devel + +``` + + There is a binary version available but the source version is later: + binary source needs_compilation +checkmate 1.9.1 1.9.3 TRUE + + Binaries will be installed + + +installing the source packages ‘GO.db’, ‘org.Hs.eg.db’, ‘reactome.db’ + + + +``` +### CRAN + +``` + + There is a binary version available but the source version is later: + binary source needs_compilation +checkmate 1.9.1 1.9.3 TRUE + + Binaries will be installed + + +installing the source packages ‘GO.db’, ‘org.Hs.eg.db’, ‘reactome.db’ + + + +``` +# spcosa + +
+ +* Version: 0.3-8 +* Source code: https://github.com/cran/spcosa +* Date/Publication: 2018-03-30 12:52:26 UTC +* Number of recursive dependencies: 70 + +Run `revdep_details(,"spcosa")` for more info + +
+ +## In both + +* checking whether package ‘spcosa’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/spcosa/new/spcosa.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘spcosa’ ... +** package ‘spcosa’ successfully unpacked and MD5 sums checked +** R +** demo +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘rJava’: + .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/spcosa/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/spcosa/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/spcosa/rJava/libs/rJava.so + Reason: image not found +Error : package ‘rJava’ could not be loaded +ERROR: lazy loading failed for package ‘spcosa’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/spcosa/new/spcosa.Rcheck/spcosa’ + +``` +### CRAN + +``` +* installing *source* package ‘spcosa’ ... +** package ‘spcosa’ successfully unpacked and MD5 sums checked +** R +** demo +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘rJava’: + .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/spcosa/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/spcosa/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/spcosa/rJava/libs/rJava.so + Reason: image not found +Error : package ‘rJava’ could not be loaded +ERROR: lazy loading failed for package ‘spcosa’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/spcosa/old/spcosa.Rcheck/spcosa’ + +``` +# StarBioTrek + +
+ +* Version: 1.8.5 +* Source code: https://github.com/cran/StarBioTrek +* URL: https://github.com/claudiacava/StarBioTrek +* BugReports: https://github.com/claudiacava/StarBioTrek/issues +* Date/Publication: 2019-04-15 +* Number of recursive dependencies: 248 + +Run `revdep_details(,"StarBioTrek")` for more info + +
+ +## In both + +* checking whether package ‘StarBioTrek’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/StarBioTrek/new/StarBioTrek.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘StarBioTrek’ ... +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : + there is no package called ‘miRNAtap.db’ +ERROR: lazy loading failed for package ‘StarBioTrek’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/StarBioTrek/new/StarBioTrek.Rcheck/StarBioTrek’ + +``` +### CRAN + +``` +* installing *source* package ‘StarBioTrek’ ... +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : + there is no package called ‘miRNAtap.db’ +ERROR: lazy loading failed for package ‘StarBioTrek’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/StarBioTrek/old/StarBioTrek.Rcheck/StarBioTrek’ + +``` +# TCGAbiolinks + +
+ +* Version: 2.10.5 +* Source code: https://github.com/cran/TCGAbiolinks +* URL: https://github.com/BioinformaticsFMRP/TCGAbiolinks +* BugReports: https://github.com/BioinformaticsFMRP/TCGAbiolinks/issues +* Date/Publication: 2019-03-20 +* Number of recursive dependencies: 246 + +Run `revdep_details(,"TCGAbiolinks")` for more info + +
+ +## In both + +* checking whether package ‘TCGAbiolinks’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/TCGAbiolinks/new/TCGAbiolinks.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘TCGAbiolinks’ ... +** R +Warning in lazyLoadDBinsertVariable(vars[i], from, datafile, ascii, compress, : + internal error 10 in R_compress3 +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : + there is no package called ‘sesameData’ +ERROR: lazy loading failed for package ‘TCGAbiolinks’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/TCGAbiolinks/new/TCGAbiolinks.Rcheck/TCGAbiolinks’ + +``` +### CRAN + +``` +* installing *source* package ‘TCGAbiolinks’ ... +** R +Warning in lazyLoadDBinsertVariable(vars[i], from, datafile, ascii, compress, : + internal error 10 in R_compress3 +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : + there is no package called ‘sesameData’ +ERROR: lazy loading failed for package ‘TCGAbiolinks’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/TCGAbiolinks/old/TCGAbiolinks.Rcheck/TCGAbiolinks’ + +``` +# TeachingDemos + +
+ +* Version: 2.10 +* Source code: https://github.com/cran/TeachingDemos +* Date/Publication: 2016-02-12 07:40:49 +* Number of recursive dependencies: 69 + +Run `revdep_details(,"TeachingDemos")` for more info + +
+ +## In both + +* R CMD check timed out + + +* checking package dependencies ... NOTE + ``` + Package suggested but not available for checking: ‘R2wd’ + ``` + +# vortexR + +
+ +* Version: 1.1.6 +* Source code: https://github.com/cran/vortexR +* URL: https://github.com/carlopacioni/vortexR/ +* BugReports: https://github.com/carlopacioni/vortexR/issues +* Date/Publication: 2019-02-06 12:50:03 UTC +* Number of recursive dependencies: 104 + +Run `revdep_details(,"vortexR")` for more info + +
+ +## In both + +* checking whether package ‘vortexR’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/vortexR/new/vortexR.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘vortexR’ ... +** package ‘vortexR’ successfully unpacked and MD5 sums checked +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/vortexR/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/vortexR/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/vortexR/rJava/libs/rJava.so + Reason: image not found +ERROR: lazy loading failed for package ‘vortexR’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/vortexR/new/vortexR.Rcheck/vortexR’ + +``` +### CRAN + +``` +* installing *source* package ‘vortexR’ ... +** package ‘vortexR’ successfully unpacked and MD5 sums checked +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/vortexR/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/vortexR/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/vortexR/rJava/libs/rJava.so + Reason: image not found +ERROR: lazy loading failed for package ‘vortexR’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/vortexR/old/vortexR.Rcheck/vortexR’ + +``` +# XLConnect + +
+ +* Version: 0.2-15 +* Source code: https://github.com/cran/XLConnect +* URL: http://www.mirai-solutions.com https://github.com/miraisolutions/xlconnect +* BugReports: https://github.com/miraisolutions/xlconnect/issues +* Date/Publication: 2018-04-05 17:20:46 UTC +* Number of recursive dependencies: 37 + +Run `revdep_details(,"XLConnect")` for more info + +
+ +## In both + +* checking whether package ‘XLConnect’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/XLConnect/new/XLConnect.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘XLConnect’ ... +** package ‘XLConnect’ successfully unpacked and MD5 sums checked +** R +** data +*** moving datasets to lazyload DB +** demo +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘XLConnectJars’: + .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/XLConnect/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/XLConnect/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/XLConnect/rJava/libs/rJava.so + Reason: image not found +Error : package ‘XLConnectJars’ could not be loaded +ERROR: lazy loading failed for package ‘XLConnect’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/XLConnect/new/XLConnect.Rcheck/XLConnect’ + +``` +### CRAN + +``` +* installing *source* package ‘XLConnect’ ... +** package ‘XLConnect’ successfully unpacked and MD5 sums checked +** R +** data +*** moving datasets to lazyload DB +** demo +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘XLConnectJars’: + .onLoad failed in loadNamespace() for 'rJava', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/XLConnect/rJava/libs/rJava.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/XLConnect/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/XLConnect/rJava/libs/rJava.so + Reason: image not found +Error : package ‘XLConnectJars’ could not be loaded +ERROR: lazy loading failed for package ‘XLConnect’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/XLConnect/old/XLConnect.Rcheck/XLConnect’ + +``` +# zooaRchGUI + +
+ +* Version: 1.0.2 +* Source code: https://github.com/cran/zooaRchGUI +* URL: http://www.zooarchgui.org/, https://zooarchgui.github.io/zooaRchGUI/ +* BugReports: https://github.com/zooaRchGUI/zooaRchGUI/issues +* Date/Publication: 2017-06-15 15:09:03 UTC +* Number of recursive dependencies: 125 + +Run `revdep_details(,"zooaRchGUI")` for more info + +
+ +## In both + +* checking whether package ‘zooaRchGUI’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/zooaRchGUI/new/zooaRchGUI.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘zooaRchGUI’ ... +** package ‘zooaRchGUI’ successfully unpacked and MD5 sums checked +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rjags', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/zooaRchGUI/rjags/libs/rjags.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/zooaRchGUI/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/zooaRchGUI/rjags/libs/rjags.so + Reason: image not found +ERROR: lazy loading failed for package ‘zooaRchGUI’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/zooaRchGUI/new/zooaRchGUI.Rcheck/zooaRchGUI’ + +``` +### CRAN + +``` +* installing *source* package ‘zooaRchGUI’ ... +** package ‘zooaRchGUI’ successfully unpacked and MD5 sums checked +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error : .onLoad failed in loadNamespace() for 'rjags', details: + call: dyn.load(file, DLLpath = DLLpath, ...) + error: unable to load shared object '/Users/max/github/forks/ggplot2/revdep/library.noindex/zooaRchGUI/rjags/libs/rjags.so': + dlopen(/Users/max/github/forks/ggplot2/revdep/library.noindex/zooaRchGUI/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib + Referenced from: /Users/max/github/forks/ggplot2/revdep/library.noindex/zooaRchGUI/rjags/libs/rjags.so + Reason: image not found +ERROR: lazy loading failed for package ‘zooaRchGUI’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/zooaRchGUI/old/zooaRchGUI.Rcheck/zooaRchGUI’ + +``` diff --git a/revdep/problems.md b/revdep/problems.md index 02d5f52ef2..e17ab68bf0 100644 --- a/revdep/problems.md +++ b/revdep/problems.md @@ -1,144 +1,3388 @@ -# AneuFinder +# bayesAB + +
+ +* Version: 1.1.1 +* Source code: https://github.com/cran/bayesAB +* URL: https://github.com/FrankPortman/bayesAB +* BugReports: https://github.com/FrankPortman/bayesAB/issues +* Date/Publication: 2018-07-14 21:40:03 UTC +* Number of recursive dependencies: 52 + +Run `revdep_details(,"bayesAB")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + ... + $Probability + [1] 0.04541 + + -------------------------------------------- + + Credible Interval on (A - B) / B for interval length(s) (0.9) : + + $Probability + 5% 95% + -0.355943366 -0.006198834 + + -------------------------------------------- + + Posterior Expected Loss for choosing B over A: + + $Probability + [1] 0.2601664 + + > plot(AB1) + Error: Either ymin or ymax must be given as an aesthetic. + Execution halted + ``` + +# breathteststan + +
+ +* Version: 0.4.7 +* Source code: https://github.com/cran/breathteststan +* URL: https://github.com/dmenne/breathteststan +* BugReports: https://github.com/dmenne/breathteststan/issues +* Date/Publication: 2018-11-07 08:50:03 UTC +* Number of recursive dependencies: 123 + +Run `revdep_details(,"breathteststan")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + ... + + inner_join(d$record, by = "patient_id") %>% + + select(patient_id, m_in = m.y, m_out = m.x, + + beta_in = beta.y, beta_out = beta.x, + + k_in = k.y, k_out = k.x) + # A tibble: 3 x 7 + patient_id m_in m_out beta_in beta_out k_in k_out + + 1 rec_01 34 36.0 2.19 2.00 0.0140 0.0124 + 2 rec_02 42 44.5 2.30 2.12 0.0108 0.00976 + 3 rec_03 32 36.8 2.23 2.14 0.00795 0.00687 + > # For a detailed analysis of the fit, use the shinystan library + > # The following plots are somewhat degenerate because + > # of the few iterations in stan_fit + > suppressPackageStartupMessages(library(rstan)) + > stan_plot(fit$stan_fit, pars = c("beta[1]","beta[2]","beta[3]")) + ci_level: 0.8 (80% intervals) + outer_level: 0.95 (95% intervals) + Error in axis.ticks.length.x.bottom %||% axis.ticks.length.x : + object 'axis.ticks.length.x.bottom' not found + Calls: ... with -> with.default -> eval -> eval -> %||% -> %||% + Execution halted + ``` + +## In both + +* checking for GNU extensions in Makefiles ... NOTE + ``` + GNU make is a SystemRequirements. + ``` + +# CSTools + +
+ +* Version: 1.0.0 +* Source code: https://github.com/cran/CSTools +* Date/Publication: 2019-04-24 14:20:02 UTC +* Number of recursive dependencies: 75 + +Run `revdep_details(,"CSTools")` for more info + +
+ +## Newly broken + +* checking tests ... + ``` + ERROR + Running the tests in ‘tests/testthat.R’ failed. + Last 13 lines of output: + > library(CSTools) + Loading required package: maps + > + > test_check("CSTools") + ── 1. Failure: some checks (@test-PlotForecastPDF.R#13) ─────────────────────── + length(...) not equal to 61. + 1/1 mismatches + [1] 67 - 61 == 6 + + ══ testthat results ═══════════════════════════════════════════════════════════ + OK: 40 SKIPPED: 0 WARNINGS: 45 FAILED: 1 + 1. Failure: some checks (@test-PlotForecastPDF.R#13) + + Error: testthat unit tests failed + Execution halted + ``` + +# esmisc + +
+ +* Version: 0.0.3 +* Source code: https://github.com/cran/esmisc +* URL: https://github.com/EDiLD/esmisc +* BugReports: https://github.com/EDiLD/esmisc/issues +* Date/Publication: 2017-01-11 10:34:49 +* Number of recursive dependencies: 41 + +Run `revdep_details(,"esmisc")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘esmisc-Ex.R’ failed + The error most likely occurred in: + + > ### Name: theme_edi + > ### Title: Custom ggplot2 theme + > ### Aliases: theme_edi + > + > ### ** Examples + > + > library(ggplot2) + > p <- ggplot(mtcars) + + + geom_point(aes(x = wt, y = mpg, + + colour=factor(gear))) + facet_wrap(~am) + > p + > p + theme_edi() + Error in axis.ticks.length.x.bottom %||% axis.ticks.length.x : + object 'axis.ticks.length.x.bottom' not found + Calls: ... with -> with.default -> eval -> eval -> %||% -> %||% + Execution halted + ``` + +# fergm + +
+ +* Version: 1.1.4 +* Source code: https://github.com/cran/fergm +* URL: http://github.com/benjamin-w-campbell/fergm +* Date/Publication: 2018-10-17 22:20:11 UTC +* Number of recursive dependencies: 79 + +Run `revdep_details(,"fergm")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + ... + + > ### Name: coef_posterior_density + > ### Title: Plots the posterior density for FERGM model terms. + > ### Aliases: coef_posterior_density + > ### Keywords: FERGM interpret summary + > + > ### ** Examples + > + > # load example data + > data("ergm.fit") + > data("fergm.fit") + > data("mesa") + > + > # rstan functions + > # Histogram of the posterior + > rstan::stan_hist(fergm.fit$stan.fit, par = "beta") + `stat_bin()` using `bins = 30`. Pick better value with `binwidth`. + Error in axis.ticks.length.x.bottom %||% axis.ticks.length.x : + object 'axis.ticks.length.x.bottom' not found + Calls: ... with -> with.default -> eval -> eval -> %||% -> %||% + Execution halted + ``` + +# fingertipscharts + +
+ +* Version: 0.0.5 +* Source code: https://github.com/cran/fingertipscharts +* BugReports: https://github.com/PublicHealthEngland/fingertipscharts/issues +* Date/Publication: 2019-04-08 21:23:17 UTC +* Number of recursive dependencies: 129 + +Run `revdep_details(,"fingertipscharts")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + ... + > df <- fingertips_data(90316) %>% + + filter(is.na(CategoryType) & + + Timeperiod == "2016/17" & + + (AreaName %in% top_names | + + ParentName == region) & + + Sex == "Persons") %>% + + mutate(ComparedtoEnglandvalueorpercentiles = + + factor(ComparedtoEnglandvalueorpercentiles, + + levels = ordered_levels)) + > p <- compare_areas(df, AreaName, Value, + + fill = ComparedtoEnglandvalueorpercentiles, + + lowerci = LowerCI95.0limit, + + upperci = UpperCI95.0limit, + + order = "desc", + + top_areas = top_names, + + title = unique(df$IndicatorName)) + > p + Error in axis.ticks.length.x.bottom %||% axis.ticks.length.x : + object 'axis.ticks.length.x.bottom' not found + Calls: ... with -> with.default -> eval -> eval -> %||% -> %||% + Execution halted + ``` + +* checking tests ... + ``` + ERROR + Running the tests in ‘tests/testthat.R’ failed. + Last 13 lines of output: + ══ testthat results ═══════════════════════════════════════════════════════════ + OK: 9 SKIPPED: 20 WARNINGS: 12 FAILED: 10 + 1. Error: box plots draws correctly (@test-box-plots.R#20) + 2. Error: desc compare areas draws correctly (@test-compare-areas.R#55) + 3. Error: no top desc compare areas draws correctly (@test-compare-areas.R#61) + 4. Error: asc compare areas draws correctly (@test-compare-areas.R#67) + 5. Error: no top asc compare areas draws correctly (@test-compare-areas.R#73) + 6. Error: desc compare areas no fill draws correctly (@test-compare-areas.R#79) + 7. Error: trends example draws correctly (@test-examples.R#52) + 8. Error: box plot example draws correctly (@test-examples.R#103) + 9. Error: trends with fill draws correctly (@test-trends.R#41) + 10. Error: trends without fill draws correctly (@test-trends.R#47) + + Error: testthat unit tests failed + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘curl’ ‘mapproj’ + All declared Imports should be used. + ``` + +# gastempt + +
+ +* Version: 0.4.4 +* Source code: https://github.com/cran/gastempt +* URL: http://github.com/dmenne/gastempt +* BugReports: http://github.com/dmenne/gastempt/issues +* Date/Publication: 2019-03-06 16:32:41 UTC +* Number of recursive dependencies: 82 + +Run `revdep_details(,"gastempt")` for more info + +
+ +## Newly broken + +* checking whether package ‘gastempt’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/gastempt/new/gastempt.Rcheck/00install.out’ for details. + ``` + +## Newly fixed + +* checking installed package size ... NOTE + ``` + installed size is 7.9Mb + sub-directories of 1Mb or more: + libs 7.5Mb + ``` + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘methods’ ‘rstantools’ + All declared Imports should be used. + ``` + +* checking for GNU extensions in Makefiles ... NOTE + ``` + GNU make is a SystemRequirements. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘gastempt’ ... +** package ‘gastempt’ successfully unpacked and MD5 sums checked +** libs +"/Library/Frameworks/R.framework/Resources/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/linexp_gastro_1b.stan +"/Library/Frameworks/R.framework/Resources/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/linexp_gastro_1c.stan +"/Library/Frameworks/R.framework/Resources/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/linexp_gastro_1d.stan +"/Library/Frameworks/R.framework/Resources/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/linexp_gastro_2b.stan +Wrote C++ file "stan_files/linexp_gastro_1c.cc" +Wrote C++ file "stan_files/linexp_gastro_1b.cc" +Wrote C++ file "stan_files/linexp_gastro_1d.cc" +Wrote C++ file "stan_files/linexp_gastro_2b.cc" +Error in readRDS("/var/folders/lb/xhxqmcrd7gv302_b1pdfykh80000gn/T//RtmpNeTeBk/file30e631b2ee0") : + error reading from connection +Calls: .Last -> readRDS +Execution halted +"/Library/Frameworks/R.framework/Resources/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/linexp_gastro_2c.stan +"/Library/Frameworks/R.framework/Resources/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/powexp_gastro_1b.stan +make: *** [stan_files/linexp_gastro_1d.cc] Error 1 +make: *** Waiting for unfinished jobs.... +Wrote C++ file "stan_files/linexp_gastro_2c.cc" +Wrote C++ file "stan_files/powexp_gastro_1b.cc" +rm stan_files/linexp_gastro_2c.cc stan_files/linexp_gastro_1d.cc stan_files/linexp_gastro_1b.cc stan_files/linexp_gastro_2b.cc stan_files/linexp_gastro_1c.cc stan_files/powexp_gastro_1b.cc +ERROR: compilation failed for package ‘gastempt’ +* removing ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/gastempt/new/gastempt.Rcheck/gastempt’ + +``` +### CRAN + +``` +* installing *source* package ‘gastempt’ ... +** package ‘gastempt’ successfully unpacked and MD5 sums checked +** libs +"/Library/Frameworks/R.framework/Resources/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/linexp_gastro_1b.stan +"/Library/Frameworks/R.framework/Resources/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/linexp_gastro_1c.stan +"/Library/Frameworks/R.framework/Resources/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/linexp_gastro_1d.stan +"/Library/Frameworks/R.framework/Resources/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/linexp_gastro_2b.stan +Wrote C++ file "stan_files/linexp_gastro_1d.cc" +Wrote C++ file "stan_files/linexp_gastro_1c.cc" +Wrote C++ file "stan_files/linexp_gastro_1b.cc" +Wrote C++ file "stan_files/linexp_gastro_2b.cc" +"/Library/Frameworks/R.framework/Resources/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/linexp_gastro_2c.stan +"/Library/Frameworks/R.framework/Resources/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/powexp_gastro_1b.stan +"/Library/Frameworks/R.framework/Resources/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/powexp_gastro_2c.stan + + +/usr/local/clang6/bin/clang++ -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c init.cpp -o init.o + + +/usr/local/clang6/bin/clang++ -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c stan_files/linexp_gastro_1b.cc -o stan_files/linexp_gastro_1b.o +Wrote C++ file "stan_files/powexp_gastro_1b.cc" +Wrote C++ file "stan_files/linexp_gastro_2c.cc" +Wrote C++ file "stan_files/powexp_gastro_2c.cc" + + +/usr/local/clang6/bin/clang++ -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c stan_files/linexp_gastro_1c.cc -o stan_files/linexp_gastro_1c.o + + +/usr/local/clang6/bin/clang++ -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c stan_files/linexp_gastro_1d.cc -o stan_files/linexp_gastro_1d.o + + +/usr/local/clang6/bin/clang++ -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c stan_files/linexp_gastro_2b.cc -o stan_files/linexp_gastro_2b.o + + +In file included from stan_files/linexp_gastro_1b.cc:3: +In file included from stan_files/linexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:15: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/additive_combine.hpp:27: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/linear_congruential.hpp:30: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/detail/const_mod.hpp:23: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/detail/large_arithmetic.hpp:19: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/detail/integer_log2.hpp:19: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/pending/integer_log2.hpp:7:1: warning: This header is deprecated. Use instead. [-W#pragma-messages] +BOOST_HEADER_DEPRECATED(""); +^ +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED' +# define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.") + ^ +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' +# define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) + ^ +:32:2: note: expanded from here + message("This header is deprecated. Use " "" " instead.") + ^ +In file included from stan_files/linexp_gastro_1c.cc:3: +In file included from stan_files/linexp_gastro_1c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:15: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/additive_combine.hpp:27: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/linear_congruential.hpp:30: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/detail/const_mod.hpp:23: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/detail/large_arithmetic.hpp:19: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/detail/integer_log2.hpp:19: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/pending/integer_log2.hpp:7:1: warning: This header is deprecated. Use instead. [-W#pragma-messages] +BOOST_HEADER_DEPRECATED(""); +^ +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED' +# define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.") + ^ +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' +# define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) + ^ +:32:2: note: expanded from here + message("This header is deprecated. Use " "" " instead.") + ^ +In file included from stan_files/linexp_gastro_1d.cc:3: +In file included from stan_files/linexp_gastro_1d.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:15: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/additive_combine.hpp:27: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/linear_congruential.hpp:30: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/detail/const_mod.hpp:23: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/detail/large_arithmetic.hpp:19: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/detail/integer_log2.hpp:19: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/pending/integer_log2.hpp:7:1: warning: This header is deprecated. Use instead. [-W#pragma-messages] +BOOST_HEADER_DEPRECATED(""); +^ +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED' +# define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.") + ^ +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' +# define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) + ^ +:32:2: note: expanded from here + message("This header is deprecated. Use " "" " instead.") + ^ +In file included from stan_files/linexp_gastro_2b.cc:3: +In file included from stan_files/linexp_gastro_2b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:15: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/additive_combine.hpp:27: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/linear_congruential.hpp:30: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/detail/const_mod.hpp:23: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/detail/large_arithmetic.hpp:19: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/detail/integer_log2.hpp:19: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/pending/integer_log2.hpp:7:1: warning: This header is deprecated. Use instead. [-W#pragma-messages] +BOOST_HEADER_DEPRECATED(""); +^ +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED' +# define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.") + ^ +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' +# define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) + ^ +:32:2: note: expanded from here + message("This header is deprecated. Use " "" " instead.") + ^ +In file included from stan_files/linexp_gastro_1b.cc:3: +In file included from stan_files/linexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:1: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Core:535: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1b.cc:3: +In file included from stan_files/linexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:2: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/LU:47: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1b.cc:3: +In file included from stan_files/linexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Cholesky:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Jacobi:29: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1b.cc:3: +In file included from stan_files/linexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Cholesky:43: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1b.cc:3: +In file included from stan_files/linexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/QR:17: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Householder:27: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1b.cc:3: +In file included from stan_files/linexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:5: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/SVD:48: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1b.cc:3: +In file included from stan_files/linexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Geometry:58: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1b.cc:3: +In file included from stan_files/linexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Eigenvalues:58: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1c.cc:3: +In file included from stan_files/linexp_gastro_1c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:1: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Core:535: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1c.cc:3: +In file included from stan_files/linexp_gastro_1c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:2: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/LU:47: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1c.cc:3: +In file included from stan_files/linexp_gastro_1c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Cholesky:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Jacobi:29: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1c.cc:3: +In file included from stan_files/linexp_gastro_1c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Cholesky:43: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1c.cc:3: +In file included from stan_files/linexp_gastro_1c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/QR:17: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Householder:27: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1c.cc:3: +In file included from stan_files/linexp_gastro_1c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:5: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/SVD:48: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1c.cc:3: +In file included from stan_files/linexp_gastro_1c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Geometry:58: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1c.cc:3: +In file included from stan_files/linexp_gastro_1c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Eigenvalues:58: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1d.cc:3: +In file included from stan_files/linexp_gastro_1d.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:1: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Core:535: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1d.cc:3: +In file included from stan_files/linexp_gastro_1d.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:2: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/LU:47: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1d.cc:3: +In file included from stan_files/linexp_gastro_1d.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Cholesky:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Jacobi:29: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1d.cc:3: +In file included from stan_files/linexp_gastro_1d.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Cholesky:43: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1d.cc:3: +In file included from stan_files/linexp_gastro_1d.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/QR:17: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Householder:27: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1d.cc:3: +In file included from stan_files/linexp_gastro_1d.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:5: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/SVD:48: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1d.cc:3: +In file included from stan_files/linexp_gastro_1d.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Geometry:58: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1d.cc:3: +In file included from stan_files/linexp_gastro_1d.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Eigenvalues:58: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_2b.cc:3: +In file included from stan_files/linexp_gastro_2b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:1: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Core:535: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_2b.cc:3: +In file included from stan_files/linexp_gastro_2b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:2: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/LU:47: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_2b.cc:3: +In file included from stan_files/linexp_gastro_2b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Cholesky:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Jacobi:29: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_2b.cc:3: +In file included from stan_files/linexp_gastro_2b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Cholesky:43: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_2b.cc:3: +In file included from stan_files/linexp_gastro_2b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/QR:17: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Householder:27: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_2b.cc:3: +In file included from stan_files/linexp_gastro_2b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:5: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/SVD:48: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_2b.cc:3: +In file included from stan_files/linexp_gastro_2b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Geometry:58: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_2b.cc:3: +In file included from stan_files/linexp_gastro_2b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Eigenvalues:58: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1b.cc:3: +In file included from stan_files/linexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:26: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/SparseCore:66: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1b.cc:3: +In file included from stan_files/linexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:27: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/OrderingMethods:71: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1b.cc:3: +In file included from stan_files/linexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:29: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/SparseCholesky:43: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1b.cc:3: +In file included from stan_files/linexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:32: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/SparseQR:35: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1b.cc:3: +In file included from stan_files/linexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:33: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/IterativeLinearSolvers:46: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1c.cc:3: +In file included from stan_files/linexp_gastro_1c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:26: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/SparseCore:66: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1c.cc:3: +In file included from stan_files/linexp_gastro_1c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:27: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/OrderingMethods:71: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1c.cc:3: +In file included from stan_files/linexp_gastro_1c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:29: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/SparseCholesky:43: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1c.cc:3: +In file included from stan_files/linexp_gastro_1c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:32: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/SparseQR:35: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1c.cc:3: +In file included from stan_files/linexp_gastro_1c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:33: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/IterativeLinearSolvers:46: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1d.cc:3: +In file included from stan_files/linexp_gastro_1d.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:26: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/SparseCore:66: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1d.cc:3: +In file included from stan_files/linexp_gastro_1d.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:27: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/OrderingMethods:71: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1d.cc:3: +In file included from stan_files/linexp_gastro_1d.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:29: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/SparseCholesky:43: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1d.cc:3: +In file included from stan_files/linexp_gastro_1d.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:32: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/SparseQR:35: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1d.cc:3: +In file included from stan_files/linexp_gastro_1d.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:33: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/IterativeLinearSolvers:46: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_2b.cc:3: +In file included from stan_files/linexp_gastro_2b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:26: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/SparseCore:66: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_2b.cc:3: +In file included from stan_files/linexp_gastro_2b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:27: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/OrderingMethods:71: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_2b.cc:3: +In file included from stan_files/linexp_gastro_2b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:29: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/SparseCholesky:43: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_2b.cc:3: +In file included from stan_files/linexp_gastro_2b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:32: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/SparseQR:35: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_2b.cc:3: +In file included from stan_files/linexp_gastro_2b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:33: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/IterativeLinearSolvers:46: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_1b.cc:3: +In file included from stan_files/linexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:44: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints.hpp:14:13: warning: unused function 'set_zero_all_adjoints' [-Wunused-function] +static void set_zero_all_adjoints() { + ^ +In file included from stan_files/linexp_gastro_1b.cc:3: +In file included from stan_files/linexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:70: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/autocorrelation.hpp:18:8: warning: function 'fft_next_good_size' is not needed and will not be emitted [-Wunneeded-internal-declaration] +size_t fft_next_good_size(size_t N) { + ^ +In file included from stan_files/linexp_gastro_1c.cc:3: +In file included from stan_files/linexp_gastro_1c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:44: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints.hpp:14:13: warning: unused function 'set_zero_all_adjoints' [-Wunused-function] +static void set_zero_all_adjoints() { + ^ +In file included from stan_files/linexp_gastro_1c.cc:3: +In file included from stan_files/linexp_gastro_1c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:70: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/autocorrelation.hpp:18:8: warning: function 'fft_next_good_size' is not needed and will not be emitted [-Wunneeded-internal-declaration] +size_t fft_next_good_size(size_t N) { + ^ +In file included from stan_files/linexp_gastro_1d.cc:3: +In file included from stan_files/linexp_gastro_1d.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:44: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints.hpp:14:13: warning: unused function 'set_zero_all_adjoints' [-Wunused-function] +static void set_zero_all_adjoints() { + ^ +In file included from stan_files/linexp_gastro_1d.cc:3: +In file included from stan_files/linexp_gastro_1d.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:70: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/autocorrelation.hpp:18:8: warning: function 'fft_next_good_size' is not needed and will not be emitted [-Wunneeded-internal-declaration] +size_t fft_next_good_size(size_t N) { + ^ +In file included from stan_files/linexp_gastro_2b.cc:3: +In file included from stan_files/linexp_gastro_2b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:44: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints.hpp:14:13: warning: unused function 'set_zero_all_adjoints' [-Wunused-function] +static void set_zero_all_adjoints() { + ^ +In file included from stan_files/linexp_gastro_2b.cc:3: +In file included from stan_files/linexp_gastro_2b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:70: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/autocorrelation.hpp:18:8: warning: function 'fft_next_good_size' is not needed and will not be emitted [-Wunneeded-internal-declaration] +size_t fft_next_good_size(size_t N) { + ^ +16 warnings generated. +/usr/local/clang6/bin/clang++ -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c stan_files/linexp_gastro_2c.cc -o stan_files/linexp_gastro_2c.o + + +16 warnings generated. +/usr/local/clang6/bin/clang++ -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c stan_files/powexp_gastro_1b.cc -o stan_files/powexp_gastro_1b.o + + +16 warnings generated. +/usr/local/clang6/bin/clang++ -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/Rcpp/include" -I"/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c stan_files/powexp_gastro_2c.cc -o stan_files/powexp_gastro_2c.o +In file included from stan_files/linexp_gastro_2c.cc:3: +In file included from stan_files/linexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:15: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/additive_combine.hpp:27: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/linear_congruential.hpp:30: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/detail/const_mod.hpp:23: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/detail/large_arithmetic.hpp:19: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/detail/integer_log2.hpp:19: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/pending/integer_log2.hpp:7:1: warning: This header is deprecated. Use instead. [-W#pragma-messages] +BOOST_HEADER_DEPRECATED(""); +^ +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED' +# define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.") + ^ +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' +# define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) + ^ +:32:2: note: expanded from here + message("This header is deprecated. Use " "" " instead.") + ^ +In file included from stan_files/linexp_gastro_2c.cc:3: +In file included from stan_files/linexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:1: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Core:535: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_2c.cc:3: +In file included from stan_files/linexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:2: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/LU:47: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_2c.cc:3: +In file included from stan_files/linexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Cholesky:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Jacobi:29: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_2c.cc:3: +In file included from stan_files/linexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Cholesky:43: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_2c.cc:3: +In file included from stan_files/linexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/QR:17: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Householder:27: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_2c.cc:3: +In file included from stan_files/linexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:5: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/SVD:48: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_2c.cc:3: +In file included from stan_files/linexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Geometry:58: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_2c.cc:3: +In file included from stan_files/linexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Eigenvalues:58: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/powexp_gastro_1b.cc:3: +In file included from stan_files/powexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:15: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/additive_combine.hpp:27: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/linear_congruential.hpp:30: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/detail/const_mod.hpp:23: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/detail/large_arithmetic.hpp:19: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/detail/integer_log2.hpp:19: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/pending/integer_log2.hpp:7:1: warning: This header is deprecated. Use instead. [-W#pragma-messages] +BOOST_HEADER_DEPRECATED(""); +^ +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED' +# define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.") + ^ +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' +# define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) + ^ +:32:2: note: expanded from here + message("This header is deprecated. Use " "" " instead.") + ^ +In file included from stan_files/powexp_gastro_2c.cc:3: +In file included from stan_files/powexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:15: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/additive_combine.hpp:27: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/linear_congruential.hpp:30: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/detail/const_mod.hpp:23: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/detail/large_arithmetic.hpp:19: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/random/detail/integer_log2.hpp:19: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/pending/integer_log2.hpp:7:1: warning: This header is deprecated. Use instead. [-W#pragma-messages] +BOOST_HEADER_DEPRECATED(""); +^ +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/config/header_deprecated.hpp:23:37: note: expanded from macro 'BOOST_HEADER_DEPRECATED' +# define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.") + ^ +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/BH/include/boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' +# define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) + ^ +:32:2: note: expanded from here + message("This header is deprecated. Use " "" " instead.") + ^ +In file included from stan_files/powexp_gastro_1b.cc:3: +In file included from stan_files/powexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:1: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Core:535: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/powexp_gastro_1b.cc:3: +In file included from stan_files/powexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:2: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/LU:47: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/powexp_gastro_1b.cc:3: +In file included from stan_files/powexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Cholesky:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Jacobi:29: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/powexp_gastro_1b.cc:3: +In file included from stan_files/powexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Cholesky:43: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/powexp_gastro_1b.cc:3: +In file included from stan_files/powexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/QR:17: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Householder:27: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/powexp_gastro_1b.cc:3: +In file included from stan_files/powexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:5: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/SVD:48: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/powexp_gastro_1b.cc:3: +In file included from stan_files/powexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Geometry:58: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_2c.cc:3: +In file included from stan_files/linexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:26: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/SparseCore:66: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_2c.cc:3: +In file included from stan_files/linexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:27: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/OrderingMethods:71: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_2c.cc:3: +In file included from stan_files/linexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:29: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/SparseCholesky:43: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/powexp_gastro_1b.cc:3: +In file included from stan_files/powexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Eigenvalues:58: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_2c.cc:3: +In file included from stan_files/linexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:32: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/SparseQR:35: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/linexp_gastro_2c.cc:3: +In file included from stan_files/linexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:33: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/IterativeLinearSolvers:46: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/powexp_gastro_2c.cc:3: +In file included from stan_files/powexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:1: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Core:535: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/powexp_gastro_2c.cc:3: +In file included from stan_files/powexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:2: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/LU:47: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/powexp_gastro_2c.cc:3: +In file included from stan_files/powexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Cholesky:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Jacobi:29: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/powexp_gastro_2c.cc:3: +In file included from stan_files/powexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Cholesky:43: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/powexp_gastro_2c.cc:3: +In file included from stan_files/powexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/QR:17: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Householder:27: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/powexp_gastro_2c.cc:3: +In file included from stan_files/powexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:5: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/SVD:48: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/powexp_gastro_2c.cc:3: +In file included from stan_files/powexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Geometry:58: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/powexp_gastro_2c.cc:3: +In file included from stan_files/powexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:14: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Dense:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Eigenvalues:58: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/powexp_gastro_1b.cc:3: +In file included from stan_files/powexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:26: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/SparseCore:66: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/powexp_gastro_1b.cc:3: +In file included from stan_files/powexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:27: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/OrderingMethods:71: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/powexp_gastro_1b.cc:3: +In file included from stan_files/powexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:29: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/SparseCholesky:43: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/powexp_gastro_1b.cc:3: +In file included from stan_files/powexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:32: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/SparseQR:35: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/powexp_gastro_1b.cc:3: +In file included from stan_files/powexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:33: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/IterativeLinearSolvers:46: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/powexp_gastro_2c.cc:3: +In file included from stan_files/powexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:26: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/SparseCore:66: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/powexp_gastro_2c.cc:3: +In file included from stan_files/powexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:27: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/OrderingMethods:71: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/powexp_gastro_2c.cc:3: +In file included from stan_files/powexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:29: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/SparseCholesky:43: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/powexp_gastro_2c.cc:3: +In file included from stan_files/powexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:32: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/SparseQR:35: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +In file included from stan_files/powexp_gastro_2c.cc:3: +In file included from stan_files/powexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:96: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/Sparse:33: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/IterativeLinearSolvers:46: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] + #pragma clang diagnostic pop + ^ +16 warnings generated. +In file included from stan_files/linexp_gastro_2c.cc:3: +In file included from stan_files/linexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:44: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints.hpp:14:13: warning: unused function 'set_zero_all_adjoints' [-Wunused-function] +static void set_zero_all_adjoints() { + ^ +In file included from stan_files/linexp_gastro_2c.cc:3: +In file included from stan_files/linexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:70: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/autocorrelation.hpp:18:8: warning: function 'fft_next_good_size' is not needed and will not be emitted [-Wunneeded-internal-declaration] +size_t fft_next_good_size(size_t N) { + ^ +In file included from stan_files/powexp_gastro_1b.cc:3: +In file included from stan_files/powexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:44: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints.hpp:14:13: warning: unused function 'set_zero_all_adjoints' [-Wunused-function] +static void set_zero_all_adjoints() { + ^ +In file included from stan_files/powexp_gastro_1b.cc:3: +In file included from stan_files/powexp_gastro_1b.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:70: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/autocorrelation.hpp:18:8: warning: function 'fft_next_good_size' is not needed and will not be emitted [-Wunneeded-internal-declaration] +size_t fft_next_good_size(size_t N) { + ^ +In file included from stan_files/powexp_gastro_2c.cc:3: +In file included from stan_files/powexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core.hpp:44: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints.hpp:14:13: warning: unused function 'set_zero_all_adjoints' [-Wunused-function] +static void set_zero_all_adjoints() { + ^ +In file included from stan_files/powexp_gastro_2c.cc:3: +In file included from stan_files/powexp_gastro_2c.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/rstaninc.hpp:3: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/rstan/include/rstan/stan_fit.hpp:34: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/test_gradients.hpp:7: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/rev/mat.hpp:12: +In file included from /Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat.hpp:70: +/Users/max/github/forks/ggplot2/revdep/library.noindex/gastempt/StanHeaders/include/stan/math/prim/mat/fun/autocorrelation.hpp:18:8: warning: function 'fft_next_good_size' is not needed and will not be emitted [-Wunneeded-internal-declaration] +size_t fft_next_good_size(size_t N) { + ^ +16 warnings generated. +16 warnings generated. +16 warnings generated. +/usr/local/clang6/bin/clang++ -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o gastempt.so stan_files/linexp_gastro_1b.o stan_files/linexp_gastro_1c.o stan_files/linexp_gastro_1d.o stan_files/linexp_gastro_2b.o stan_files/linexp_gastro_2c.o stan_files/powexp_gastro_1b.o stan_files/powexp_gastro_2c.o init.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation +ld: warning: text-based stub file /System/Library/Frameworks//CoreFoundation.framework/CoreFoundation.tbd and library file /System/Library/Frameworks//CoreFoundation.framework/CoreFoundation are out of sync. Falling back to library file for linking. +rm stan_files/linexp_gastro_2c.cc stan_files/linexp_gastro_1d.cc stan_files/powexp_gastro_2c.cc stan_files/linexp_gastro_1b.cc stan_files/linexp_gastro_2b.cc stan_files/linexp_gastro_1c.cc stan_files/powexp_gastro_1b.cc +installing to /Users/max/github/forks/ggplot2/revdep/checks.noindex/gastempt/old/gastempt.Rcheck/gastempt/libs +** R +** inst +** byte-compile and prepare package for lazy loading +** help +*** installing help indices +** building package indices +** installing vignettes +** testing if installed package can be loaded +* DONE (gastempt) + +``` +# ggalt + +
+ +* Version: 0.4.0 +* Source code: https://github.com/cran/ggalt +* URL: https://github.com/hrbrmstr/ggalt +* BugReports: https://github.com/hrbrmstr/ggalt/issues +* Date/Publication: 2017-02-15 18:16:00 +* Number of recursive dependencies: 78 + +Run `revdep_details(,"ggalt")` for more info + +
+ +## Newly broken + +* checking whether package ‘ggalt’ can be installed ... WARNING + ``` + Found the following significant warnings: + Note: possible error in 'pathGrob(munched$x, munched$y, ': unused argument (pathId = munched$group) + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/ggalt/new/ggalt.Rcheck/00install.out’ for details. + Information on the location(s) of code generating the ‘Note’s can be + obtained by re-running with environment variable R_KEEP_PKG_SOURCE set + to ‘yes’. + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘plotly’ + All declared Imports should be used. + ``` + +# ggforce + +
+ +* Version: 0.2.2 +* Source code: https://github.com/cran/ggforce +* URL: https://ggforce.data-imaginist.com +* BugReports: https://github.com/thomasp85/ggforce/issues +* Date/Publication: 2019-04-23 13:20:03 UTC +* Number of recursive dependencies: 66 + +Run `revdep_details(,"ggforce")` for more info + +
+ +## Newly broken + +* checking whether package ‘ggforce’ can be installed ... WARNING + ``` + Found the following significant warnings: + Note: possible error in 'pathGrob(munched$x, munched$y, ': unused argument (pathId = munched$group) + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/ggforce/new/ggforce.Rcheck/00install.out’ for details. + Information on the location(s) of code generating the ‘Note’s can be + obtained by re-running with environment variable R_KEEP_PKG_SOURCE set + to ‘yes’. + ``` + +# ggpol + +
+ +* Version: 0.0.5 +* Source code: https://github.com/cran/ggpol +* URL: https://github.com/erocoar/ggpol +* Date/Publication: 2019-03-14 13:40:02 UTC +* Number of recursive dependencies: 50 + +Run `revdep_details(,"ggpol")` for more info + +
+ +## Newly broken + +* checking whether package ‘ggpol’ can be installed ... WARNING + ``` + Found the following significant warnings: + Note: possible error in 'pathGrob(munched$x, munched$y, ': unused argument (pathId = munched$group) + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/ggpol/new/ggpol.Rcheck/00install.out’ for details. + Information on the location(s) of code generating the ‘Note’s can be + obtained by re-running with environment variable R_KEEP_PKG_SOURCE set + to ‘yes’. + ``` + +## In both -Version: 1.10.2 +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘dplyr’ ‘grDevices’ + All declared Imports should be used. + ``` -# BaalChIP +# ggpolypath -Version: 1.8.0 +
-# Bclim +* Version: 0.1.0 +* Source code: https://github.com/cran/ggpolypath +* URL: https://github.com/mdsumner/ggpolypath, http://rpubs.com/kohske/3522 +* BugReports: https://github.com/mdsumner/ggpolypath/issues +* Date/Publication: 2016-08-10 02:53:58 +* Number of recursive dependencies: 45 -Version: 3.1.2 +Run `revdep_details(,"ggpolypath")` for more info -# CATALYST +
-Version: 1.6.7 +## Newly broken -# cellHTS2 +* checking whether package ‘ggpolypath’ can be installed ... WARNING + ``` + Found the following significant warnings: + Note: possible error in 'pathGrob(munched$x, munched$y, ': unused argument (pathId = munched$group) + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/ggpolypath/new/ggpolypath.Rcheck/00install.out’ for details. + Information on the location(s) of code generating the ‘Note’s can be + obtained by re-running with environment variable R_KEEP_PKG_SOURCE set + to ‘yes’. + ``` + +# ggsolvencyii -Version: 2.46.1 +
-# ChIPexoQual +* Version: 0.1.2 +* Source code: https://github.com/cran/ggsolvencyii +* URL: https://github.com/vanzanden/ggsolvencyii +* BugReports: https://github.com/vanzanden/ggsolvencyii/issues +* Date/Publication: 2019-01-04 12:10:03 UTC +* Number of recursive dependencies: 66 -Version: 1.6.0 +Run `revdep_details(,"ggsolvencyii")` for more info -# chromstaR +
-Version: 1.8.1 +## Newly broken -# ClassifyR - -Version: 2.2.6 - -# clusternomics - -Version: 0.1.1 - -# CNPBayes - -Version: 1.12.0 - -# DeepBlueR - -Version: 1.8.0 - -# DiffBind - -Version: 2.10.0 - -# dmrseq - -Version: 1.2.5 - -# FindMyFriends - -Version: 1.12.0 - -# GOTHiC - -Version: 1.18.1 - -# HTSSIP - -Version: 1.4.0 - -# IHWpaper - -Version: 1.10.0 +* checking whether package ‘ggsolvencyii’ can be installed ... WARNING + ``` + Found the following significant warnings: + Note: possible error in 'pathGrob(munched$x, munched$y, ': unused argument (pathId = munched$group) + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/ggsolvencyii/new/ggsolvencyii.Rcheck/00install.out’ for details. + Information on the location(s) of code generating the ‘Note’s can be + obtained by re-running with environment variable R_KEEP_PKG_SOURCE set + to ‘yes’. + ``` + +# ggspatial + +
+ +* Version: 1.0.3 +* Source code: https://github.com/cran/ggspatial +* URL: https://github.com/paleolimbot/ggspatial +* BugReports: https://github.com/paleolimbot/ggspatial/issues +* Date/Publication: 2018-12-14 21:10:04 UTC +* Number of recursive dependencies: 80 + +Run `revdep_details(,"ggspatial")` for more info + +
+ +## Newly broken + +* checking whether package ‘ggspatial’ can be installed ... WARNING + ``` + Found the following significant warnings: + Note: possible error in 'pathGrob(munched$x, munched$y, ': unused argument (pathId = munched$group) + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/ggspatial/new/ggspatial.Rcheck/00install.out’ for details. + Information on the location(s) of code generating the ‘Note’s can be + obtained by re-running with environment variable R_KEEP_PKG_SOURCE set + to ‘yes’. + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘reshape2’ ‘rosm’ + All declared Imports should be used. + ``` + +# ggstance + +
+ +* Version: 0.3.1 +* Source code: https://github.com/cran/ggstance +* Date/Publication: 2018-07-20 10:10:03 UTC +* Number of recursive dependencies: 105 + +Run `revdep_details(,"ggstance")` for more info + +
+ +## Newly broken + +* checking tests ... + ``` + ERROR + Running the tests in ‘tests/testthat.R’ failed. + Last 13 lines of output: + > library("testthat") + > library("ggstance") + > + > test_check("ggstance") + ── 1. Failure: position_jitterdodge() flips (@test-positions.R#20) ──────────── + `h_data` not identical to `v_data`. + Component 1: Component 11: Mean relative difference: 0.006782654 + Component 1: Component 13: Mean relative difference: 0.006916903 + + ══ testthat results ═══════════════════════════════════════════════════════════ + OK: 29 SKIPPED: 28 WARNINGS: 0 FAILED: 1 + 1. Failure: position_jitterdodge() flips (@test-positions.R#20) + + Error: testthat unit tests failed + Execution halted + ``` + +# ggstatsplot + +
+ +* Version: 0.0.10 +* Source code: https://github.com/cran/ggstatsplot +* URL: https://indrajeetpatil.github.io/ggstatsplot/, https://github.com/IndrajeetPatil/ggstatsplot +* BugReports: https://github.com/IndrajeetPatil/ggstatsplot/issues +* Date/Publication: 2019-03-17 17:50:02 UTC +* Number of recursive dependencies: 217 + +Run `revdep_details(,"ggstatsplot")` for more info + +
+ +## Newly broken + +* checking tests ... + ``` + ERROR + Running the tests in ‘tests/testthat.R’ failed. + Last 13 lines of output: + as.character(df2$value[[35]][1]) not identical to "5pt". + 1/1 mismatches + x[1]: "NULL" + y[1]: "5pt" + + ══ testthat results ═══════════════════════════════════════════════════════════ + OK: 21 SKIPPED: 184 WARNINGS: 0 FAILED: 5 + 1. Failure: `theme_pie()` works (@test_theme_ggstatsplot.R#65) + 2. Failure: `theme_pie()` works (@test_theme_ggstatsplot.R#66) + 3. Failure: `theme_pie()` works (@test_theme_ggstatsplot.R#67) + 4. Failure: `theme_pie()` works (@test_theme_ggstatsplot.R#68) + 5. Failure: `theme_pie()` works (@test_theme_ggstatsplot.R#69) + + Error: testthat unit tests failed + Execution halted + ``` + +# ggtern + +
+ +* Version: 3.1.0 +* Source code: https://github.com/cran/ggtern +* URL: http://www.ggtern.com +* Date/Publication: 2018-12-19 11:20:03 UTC +* Number of recursive dependencies: 44 + +Run `revdep_details(,"ggtern")` for more info + +
+ +## Newly broken + +* checking whether package ‘ggtern’ can be installed ... WARNING + ``` + Found the following significant warnings: + Note: possible error in 'pathGrob(munched$x, munched$y, ': unused argument (pathId = munched$group) + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/ggtern/new/ggtern.Rcheck/00install.out’ for details. + Information on the location(s) of code generating the ‘Note’s can be + obtained by re-running with environment variable R_KEEP_PKG_SOURCE set + to ‘yes’. + ``` + +## In both + +* checking Rd cross-references ... NOTE + ``` + Package unavailable to check Rd xrefs: ‘chemometrics’ + ``` + +# heatmaply + +
+ +* Version: 0.15.2 +* Source code: https://github.com/cran/heatmaply +* URL: https://cran.r-project.org/package=heatmaply, https://github.com/talgalili/heatmaply/, https://www.r-statistics.com/tag/heatmaply/ +* BugReports: https://github.com/talgalili/heatmaply/issues +* Date/Publication: 2018-07-06 13:00:03 UTC +* Number of recursive dependencies: 107 + +Run `revdep_details(,"heatmaply")` for more info + +
+ +## Newly broken + +* checking installed package size ... NOTE + ``` + installed size is 5.0Mb + sub-directories of 1Mb or more: + doc 4.6Mb + ``` + +## In both + +* checking Rd cross-references ... NOTE + ``` + Package unavailable to check Rd xrefs: ‘d3heatmap’ + ``` + +# HistDAWass + +
+ +* Version: 1.0.1 +* Source code: https://github.com/cran/HistDAWass +* Date/Publication: 2018-03-20 16:23:27 UTC +* Number of recursive dependencies: 76 + +Run `revdep_details(,"HistDAWass")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘HistDAWass-Ex.R’ failed + The error most likely occurred in: + + > ### Name: plot-distributionH + > ### Title: plot for a distributionH object + > ### Aliases: plot-distributionH plot,distributionH-method + > + > ### ** Examples + > + > ##---- initialize a distributionH + > mydist<-distributionH(x=c(7,8,10,15),p=c(0, 0.2, 0.7, 1)) + > # show the histogram + > plot(mydist) #plots mydist + > plot(mydist, type="HISTO", col="red", border="blue") #plots mydist + > plot(mydist, type="DENS", col="red", border="blue") #plots a density approximation for mydist + > plot(mydist, type="HBOXPLOT") #plots a horizontal boxplot for mydist + Error: Elements must equal the number of rows or 1 + Execution halted + ``` + +# incR + +
+ +* Version: 1.1.0 +* Source code: https://github.com/cran/incR +* Date/Publication: 2018-03-21 15:25:24 UTC +* Number of recursive dependencies: 56 + +Run `revdep_details(,"incR")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + ... + > ### Name: incRplot + > ### Title: Quick visualisation of incubation temperatures, on-bouts and + > ### off-bouts + > ### Aliases: incRplot + > + > ### ** Examples + > + > # loading example data + > data(incR_procdata) + > my_plot <- incRplot(data = incR_procdata[complete.cases(incR_procdata$temperature),], + + time.var = "dec_time", + + day.var = "date", + + inc.temperature.var = "temperature", + + env.temperature.var = "env_temp", + + vector.incubation = "incR_score") + > + > # see your plot + > my_plot + Error in scale_apply(layer_data, x_vars, "train", SCALE_X, x_scales) : + Calls: ... -> f -> -> f -> scale_apply + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘dplyr’ ‘rgeos’ + All declared Imports should be used. + ``` + +# interflex + +
+ +* Version: 1.0.4 +* Source code: https://github.com/cran/interflex +* Date/Publication: 2018-04-20 09:50:27 UTC +* Number of recursive dependencies: 46 + +Run `revdep_details(,"interflex")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘interflex-Ex.R’ failed + The error most likely occurred in: + + > ### Name: inter.binning + > ### Title: The Binning Estimator + > ### Aliases: inter.binning + > ### Keywords: graphics + > + > ### ** Examples + > + > library(interflex) + > data(interflex) + > inter.binning(Y = "Y", D = "D", X = "X", Z = "Z1", + + data = s1, nbins = 3, vartype = "homoscedastic", + + Ylabel = "Y", Dlabel = "Tr", Xlabel="X") + Error: Elements must equal the number of rows or 1 + Execution halted + ``` + +# jcolors + +
+ +* Version: 0.0.3 +* Source code: https://github.com/cran/jcolors +* URL: https://jaredhuling.github.io/jcolors/ +* BugReports: https://github.com/jaredhuling/jcolors/issues +* Date/Publication: 2018-08-09 10:20:10 UTC +* Number of recursive dependencies: 46 + +Run `revdep_details(,"jcolors")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘jcolors-Ex.R’ failed + The error most likely occurred in: + + > ### Name: theme_dark_bg + > ### Title: minimal theme for dark backgrounds + > ### Aliases: theme_dark_bg theme_light_bg + > + > ### ** Examples + > + > library(ggplot2) + > + > p <- ggplot(mtcars) + geom_point(aes(x = wt, y = mpg, + + colour = factor(gear))) + facet_grid(vs~am) + > p + theme_dark_bg() + Error in axis.ticks.length.x.bottom %||% axis.ticks.length.x : + object 'axis.ticks.length.x.bottom' not found + Calls: ... with -> with.default -> eval -> eval -> %||% -> %||% + Execution halted + ``` # lime -Version: 0.4.1 - -# MSnbase - -Version: 2.8.3 - -# msPurity - -Version: 1.8.1 - -# onemap - -Version: 2.1.1 - -# phylosim - -Version: 3.0.2 - -# pmc - -Version: 1.0.3 - -# pRoloc - -Version: 1.22.2 - -# PureCN - -Version: 1.12.2 - -# RcmdrPlugin.FuzzyClust - -Version: 1.1 - -# scruff - -Version: 1.0.2 - -# sdmpredictors - -Version: 0.2.8 - -# simulator - -Version: 0.2.0 - -# Single.mTEC.Transcriptomes - -Version: 1.10.0 - -# SNPhood - -Version: 1.12.0 - -# TeachingDemos - -Version: 2.10 - -# TPP - -Version: 3.10.1 - -# transcriptogramer - -Version: 1.4.1 - -# variancePartition - -Version: 1.12.3 - -# XBSeq - -Version: 1.14.1 +
+ +* Version: 0.4.1 +* Source code: https://github.com/cran/lime +* URL: https://github.com/thomasp85/lime +* BugReports: https://github.com/thomasp85/lime/issues +* Date/Publication: 2018-11-21 12:50:02 UTC +* Number of recursive dependencies: 126 + +Run `revdep_details(,"lime")` for more info + +
+ +## Newly broken + +* checking tests ... + ``` + ERROR + Running the tests in ‘tests/testthat.R’ failed. + Last 13 lines of output: + 1: h2o.importFile(path) at testthat/test-h2o.R:12 + 2: h2o.importFolder(path, pattern = "", destination_frame = destination_frame, parse, + header, sep, col.names, col.types, na.strings = na.strings, decrypt_tool = decrypt_tool, + skipped_columns = skipped_columns) + 3: .h2o.__remoteSend(.h2o.__IMPORT, path = path, pattern = pattern) + 4: .h2o.doSafeREST(h2oRestApiVersion = h2oRestApiVersion, urlSuffix = page, parms = .params, + method = method) + 5: stop(msg) + + ══ testthat results ═══════════════════════════════════════════════════════════ + OK: 28 SKIPPED: 0 WARNINGS: 1 FAILED: 1 + 1. Error: H2OBinomialClassification: lime explanation only produces one entry per case and feature (@test-h2o.R#12) + + Error: testthat unit tests failed + Execution halted + ``` + +# mlr + +
+ +* Version: 2.14.0 +* Source code: https://github.com/cran/mlr +* URL: https://github.com/mlr-org/mlr +* BugReports: https://github.com/mlr-org/mlr/issues +* Date/Publication: 2019-04-25 22:00:04 UTC +* Number of recursive dependencies: 359 + +Run `revdep_details(,"mlr")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + ... + Task: Sonar-example, Learner: classif.rpart + Resampling: cross-validation + Measures: acc ber + [Resample] iter 1: 0.6153846 0.4109375 + [Resample] iter 2: 0.7115385 0.2892870 + + + Aggregated Result: acc.test.mean=0.6634615,ber.test.mean=0.3501123 + + + > rmat = convertBMRToRankMatrix(bmr) + > print(rmat) + Sonar-example iris-example + classif.lda 1 1 + classif.rpart 2 2 + > plotBMRSummary(bmr) + > plotBMRBoxplots(bmr, ber, style = "violin") + Warning in max(data$density) : + no non-missing arguments to max; returning -Inf + Error: Elements must equal the number of rows or 1 + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 6.1Mb + sub-directories of 1Mb or more: + R 2.0Mb + data 2.3Mb + help 1.4Mb + ``` + +# MTLR + +
+ +* Version: 0.2.0 +* Source code: https://github.com/cran/MTLR +* URL: https://github.com/haiderstats/MTLR +* BugReports: https://github.com/haiderstats/MTLR/issues +* Date/Publication: 2019-03-09 17:22:41 UTC +* Number of recursive dependencies: 56 + +Run `revdep_details(,"MTLR")` for more info + +
+ +## Newly broken + +* checking tests ... + ``` + ERROR + Running the tests in ‘tests/testthat.R’ failed. + Last 13 lines of output: + Component "theme": Component 20: target is NULL, current is margin + Component "theme": Component 21: target is NULL, current is unit + Component "theme": Component 22: Modes: list, NULL + ... + + ══ testthat results ═══════════════════════════════════════════════════════════ + OK: 84 SKIPPED: 2 WARNINGS: 35 FAILED: 5 + 1. Failure: print and plot functions are consistent for basic survival dataset (@test-method.R#15) + 2. Failure: plotcurves function is consistent (@test-plotcurves.R#13) + 3. Failure: plotcurves function is consistent (@test-plotcurves.R#14) + 4. Failure: plotcurves function is consistent (@test-plotcurves.R#15) + 5. Failure: plotcurves function is consistent (@test-plotcurves.R#16) + + Error: testthat unit tests failed + Execution halted + ``` + +# OUTRIDER + +
+ +* Version: 1.0.4 +* Source code: https://github.com/cran/OUTRIDER +* URL: https://github.com/gagneurlab/OUTRIDER +* Date/Publication: 2019-03-19 +* Number of recursive dependencies: 151 + +Run `revdep_details(,"OUTRIDER")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + ... + + > ### Name: aberrant + > ### Title: Number of aberrant events + > ### Aliases: aberrant + > + > ### ** Examples + > + > ods <- makeExampleOutriderDataSet() + > ods <- OUTRIDER(ods, implementation='pca') + Fri May 3 17:36:07 2019: SizeFactor estimation ... + Fri May 3 17:36:07 2019: Controlling for confounders ... + Using provided q with: 10 + Fri May 3 17:36:07 2019: Using the pca implementation for controlling. + Fri May 3 17:36:07 2019: Used the pca implementation for controlling. + Fri May 3 17:36:07 2019: Fitting the data ... + Warning in socketConnection(host, port, TRUE, TRUE, "a+b", timeout = timeout) : + port 11896 cannot be opened + Error in socketConnection(host, port, TRUE, TRUE, "a+b", timeout = timeout) : + cannot open the connection + Calls: OUTRIDER ... .local -> .bpfork -> .bpforkConnect -> socketConnection + Execution halted + ``` + +## In both + +* checking tests ... + ``` + ERROR + Running the tests in ‘tests/testthat.R’ failed. + Last 13 lines of output: + [1] "Fri May 3 17:36:41 2019: Iteration: 15 loss: 3.78202399468212" + Time difference of 4.905578 secs + [1] "15 Final nb-AE loss: 3.78202399468212" + [1] "Evaluation loss: 0.291702213587694" + [1] "Initial PCA loss: 6.46616282459584" + [1] "Fri May 3 17:36:48 2019: Iteration: 1 loss: 4.81536028479294" + [1] "Fri May 3 17:36:48 2019: Iteration: 2 loss: 4.78999714768799" + Time difference of 1.036859 secs + [1] "2 Final nb-AE loss: 4.78999714768799" + ══ testthat results ═══════════════════════════════════════════════════════════ + OK: 82 SKIPPED: 0 WARNINGS: 24 FAILED: 1 + 1. Error: Expression filtering (@test_filtering.R#4) + + Error: testthat unit tests failed + Execution halted + ``` + +* checking package dependencies ... NOTE + ``` + Package suggested but not available for checking: ‘TxDb.Hsapiens.UCSC.hg19.knownGene’ + ``` + +* checking DESCRIPTION meta-information ... NOTE + ``` + Authors@R field gives more than one person with maintainer role: + Felix Brechtmann [aut, cre] + Christian Mertes [aut, cre] + ``` + +# PathoStat + +
+ +* Version: 1.8.4 +* Source code: https://github.com/cran/PathoStat +* URL: https://github.com/mani2012/PathoStat +* BugReports: https://github.com/mani2012/PathoStat/issues +* Date/Publication: 2018-12-02 +* Number of recursive dependencies: 177 + +Run `revdep_details(,"PathoStat")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘PathoStat-Ex.R’ failed + The error most likely occurred in: + + > ### Name: findTaxonomy + > ### Title: Find the taxonomy for unlimited tids + > ### Aliases: findTaxonomy + > + > ### ** Examples + > + > example_data_dir <- system.file("example/data", package = "PathoStat") + > pathoreport_file_suffix <- "-sam-report.tsv" + > datlist <- readPathoscopeData(example_data_dir, pathoreport_file_suffix, + + input.files.name.vec = as.character(1:6)) + > dat <- datlist$data + > ids <- rownames(dat) + > tids <- unlist(lapply(ids, FUN = grepTid)) + > taxonLevels <- findTaxonomy(tids[1:5]) + Error: HTTP failure: 429 + {"error":"API rate limit exceeded","api-key":"208.103.64.29","count":"4","limit":"3"} + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘ComplexHeatmap’ ‘RColorBrewer’ + All declared Imports should be used. + ``` + +# PepsNMR + +
+ +* Version: 1.0.2 +* Source code: https://github.com/cran/PepsNMR +* URL: https://github.com/ManonMartin/PepsNMR +* BugReports: https://github.com/ManonMartin/PepsNMR/issues +* Date/Publication: 2019-03-08 +* Number of recursive dependencies: 53 + +Run `revdep_details(,"PepsNMR")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘PepsNMR-Ex.R’ failed + The error most likely occurred in: + + > ### Name: DrawPCA + > ### Title: Draw the PCA scores or loadings of the signals + > ### Aliases: DrawPCA + > ### Keywords: hplot + > + > ### ** Examples + > + > require(PepsNMRData) + Loading required package: PepsNMRData + > # Draw loadings + > DrawPCA(FinalSpectra_HS, main = "PCA loadings plot", + + Class = NULL, axes =c(1,3, 5), type ="loadings", loadingstype="l", + + num.stacked=4, xlab="ppm", createWindow = TRUE) + dev.new(): using pdf(file="Rplots2.pdf") + Error: Aesthetics must be either length 1 or the same as the data (9): label + Execution halted + ``` + +# SCORPIUS + +
+ +* Version: 1.0.2 +* Source code: https://github.com/cran/SCORPIUS +* URL: http://github.com/rcannood/SCORPIUS +* BugReports: https://github.com/rcannood/SCORPIUS/issues +* Date/Publication: 2018-06-29 14:55:11 UTC +* Number of recursive dependencies: 71 + +Run `revdep_details(,"SCORPIUS")` for more info + +
+ +## Newly broken + +* checking tests ... + ``` + ERROR + Running the tests in ‘tests/testthat.R’ failed. + Last 13 lines of output: + TSP requires a symmetric matrix + 1: infer_trajectory(space) at testthat/test-trajectory_inference.R:9 + 2: infer_initial_trajectory(space, k) + 3: TSP::insert_dummy(TSP::TSP(cluster_distances)) + 4: TSP::TSP(cluster_distances) + 5: as.TSP(x) + 6: as.TSP.matrix(x) + 7: stop("TSP requires a symmetric matrix") + + ══ testthat results ═══════════════════════════════════════════════════════════ + OK: 189 SKIPPED: 0 WARNINGS: 0 FAILED: 1 + 1. Error: With generated data (@test-trajectory_inference.R#9) + + Error: testthat unit tests failed + Execution halted + ``` + +# shiny + +
+ +* Version: 1.3.2 +* Source code: https://github.com/cran/shiny +* URL: http://shiny.rstudio.com +* BugReports: https://github.com/rstudio/shiny/issues +* Date/Publication: 2019-04-22 16:00:09 UTC +* Number of recursive dependencies: 55 + +Run `revdep_details(,"shiny")` for more info + +
+ +## Newly broken + +* checking tests ... + ``` + ERROR + Running the tests in ‘tests/test-all.R’ failed. + Last 13 lines of output: + 3: test_dir + 2: test_package_dir + 1: test_check + 78: + ── 1. Failure: debounce/throttle work properly (with priming) (@test-reactivity. + isolate(tr()) not identical to 10. + 1/1 mismatches + [1] 9 - 10 == -1 + + ══ testthat results ═══════════════════════════════════════════════════════════ + OK: 760 SKIPPED: 0 WARNINGS: 0 FAILED: 1 + 1. Failure: debounce/throttle work properly (with priming) (@test-reactivity.r#1125) + + Error: testthat unit tests failed + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 10.9Mb + sub-directories of 1Mb or more: + R 2.0Mb + www 7.9Mb + ``` + +# ssMousetrack + +
+ +* Version: 1.1.5 +* Source code: https://github.com/cran/ssMousetrack +* BugReports: https://github.com/antcalcagni/ssMousetrack/issues +* Date/Publication: 2019-01-16 17:00:03 UTC +* Number of recursive dependencies: 56 + +Run `revdep_details(,"ssMousetrack")` for more info + +
+ +## Newly broken + +* checking installed package size ... NOTE + ``` + installed size is 5.6Mb + sub-directories of 1Mb or more: + libs 5.3Mb + ``` + +* checking for GNU extensions in Makefiles ... NOTE + ``` + GNU make is a SystemRequirements. + ``` + +## Newly fixed + +* checking whether package ‘ssMousetrack’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/ssMousetrack/old/ssMousetrack.Rcheck/00install.out’ for details. + ``` + +# stats19 + +
+ +* Version: 0.2.1 +* Source code: https://github.com/cran/stats19 +* URL: https://itsleeds.github.io/stats19/ +* BugReports: https://github.com/ropensci/stats19/issues +* Date/Publication: 2019-04-03 08:40:03 UTC +* Number of recursive dependencies: 114 + +Run `revdep_details(,"stats19")` for more info + +
+ +## Newly broken + +* checking tests ... + ``` + ERROR + Running the tests in ‘tests/testthat.R’ failed. + Last 13 lines of output: + Content type 'application/x-zip-compressed' length 1236846 bytes (1.2 MB) + ================================================== + downloaded 1.2 MB + + trying URL 'http://data.dft.gov.uk.s3.amazonaws.com/road-accidents-safety-data/dftRoadSafetyData_Casualties_2017.zip' + Content type 'application/x-zip-compressed' length 1169376 bytes (1.1 MB) + ================================================== + downloaded 1.1 MB + + ══ testthat results ═══════════════════════════════════════════════════════════ + OK: 44 SKIPPED: 4 WARNINGS: 7 FAILED: 1 + 1. Error: get_stats19 works (@test-get.R#9) + + Error: testthat unit tests failed + Execution halted + ``` + +# trialr + +
+ +* Version: 0.1.0 +* Source code: https://github.com/cran/trialr +* URL: https://github.com/brockk/trialr +* BugReports: https://github.com/brockk/trialr/issues +* Date/Publication: 2019-04-21 21:00:03 UTC +* Number of recursive dependencies: 79 + +Run `revdep_details(,"trialr")` for more info + +
+ +## Newly broken + +* checking installed package size ... NOTE + ``` + installed size is 9.5Mb + sub-directories of 1Mb or more: + doc 1.6Mb + libs 7.2Mb + ``` + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘dplyr’ ‘magrittr’ ‘tidyr’ + All declared Imports should be used. + ``` + +* checking for GNU extensions in Makefiles ... NOTE + ``` + GNU make is a SystemRequirements. + ``` + +## Newly fixed + +* checking whether package ‘trialr’ can be installed ... ERROR + ``` + Installation failed. + See ‘/Users/max/github/forks/ggplot2/revdep/checks.noindex/trialr/old/trialr.Rcheck/00install.out’ for details. + ``` + +# vdiffr + +
+ +* Version: 0.3.0 +* Source code: https://github.com/cran/vdiffr +* URL: https://github.com/r-lib/vdiffr +* BugReports: https://github.com/r-lib/vdiffr/issues +* Date/Publication: 2019-01-02 19:30:02 UTC +* Number of recursive dependencies: 87 + +Run `revdep_details(,"vdiffr")` for more info + +
+ +## Newly broken + +* checking tests ... + ``` + ... + : 56' style='font-size: 13.20px; font-family: Liberation Sans;' textLength='38.8 + : 3px' lengthAdjust='spacingAndGlyphs'>myplot + + + Running the tests in ‘tests/testthat.R’ failed. + Last 13 lines of output: + > library("vdiffr") + > test_check("vdiffr") + ── 1. Failure: Doppelgangers pass (@test-expectations.R#25) ─────────────────── + `ggplot_result` inherits from `expectation_failure/expectation/error/condition/vdiffr_mismatch` not `expectation_success`. + + ── 2. Failure: ggtitle is set correctly (@test-ggplot.R#6) ──────────────────── + purrr::every(ggplot_results, inherits, "expectation_success") isn't true. + + ══ testthat results ═══════════════════════════════════════════════════════════ + OK: 29 SKIPPED: 0 WARNINGS: 0 FAILED: 2 + 1. Failure: Doppelgangers pass (@test-expectations.R#25) + 2. Failure: ggtitle is set correctly (@test-ggplot.R#6) + + Error: testthat unit tests failed + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘freetypeharfbuzz’ + All declared Imports should be used. + ``` + +# vidger + +
+ +* Version: 1.2.1 +* Source code: https://github.com/cran/vidger +* URL: https://github.com/btmonier/vidger, https://bioconductor.org/packages/release/bioc/html/vidger.html +* BugReports: https://github.com/btmonier/vidger/issues +* Date/Publication: 2019-01-04 +* Number of recursive dependencies: 116 + +Run `revdep_details(,"vidger")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘vidger-Ex.R’ failed + The error most likely occurred in: + + > ### Name: vsMAMatrix + > ### Title: MA plot matrix from log_{2} fold changes and -log_{10}(p-values) + > ### Aliases: vsMAMatrix + > + > ### ** Examples + > + > # Cuffdiff example + > data("df.cuff") + > vsMAMatrix( + + data = df.cuff, d.factor = NULL, type = "cuffdiff", + + padj = 0.05, y.lim = NULL, lfc = 1, title = TRUE, + + grid = TRUE, counts = TRUE, data.return = FALSE + + ) + Error: Aesthetics must be either length 1 or the same as the data (36): label + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 10.5Mb + sub-directories of 1Mb or more: + data 4.0Mb + doc 6.1Mb + ``` + +# xpose + +
+ +* Version: 0.4.4 +* Source code: https://github.com/cran/xpose +* URL: https://github.com/UUPharmacometrics/xpose +* BugReports: https://github.com/UUPharmacometrics/xpose/issues +* Date/Publication: 2019-03-21 17:10:03 UTC +* Number of recursive dependencies: 89 + +Run `revdep_details(,"xpose")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘xpose-Ex.R’ failed + The error most likely occurred in: + + > ### Name: amt_vs_idv + > ### Title: Compartment kinetics + > ### Aliases: amt_vs_idv + > + > ### ** Examples + > + > amt_vs_idv(xpdb_ex_pk) + Using data from $prob no.1 + Tidying data by ID, SEX, MED1, MED2, AMT ... and 20 more variables + Error in axis.ticks.length.x.bottom %||% axis.ticks.length.x : + object 'axis.ticks.length.x.bottom' not found + Calls: ... with -> with.default -> eval -> eval -> %||% -> %||% + Execution halted + ``` + +* checking tests ... + ``` + ERROR + Running the tests in ‘tests/testthat.R’ failed. + Last 13 lines of output: + 31: with.default(theme, axis.ticks.length.x.bottom %||% axis.ticks.length.x %||% axis.ticks.length) + 32: eval(substitute(expr), data, enclos = parent.frame()) + 33: eval(substitute(expr), data, enclos = parent.frame()) + 34: axis.ticks.length.x.bottom %||% axis.ticks.length.x %||% axis.ticks.length + 35: axis.ticks.length.x.bottom %||% axis.ticks.length.x + + ══ testthat results ═══════════════════════════════════════════════════════════ + OK: 515 SKIPPED: 6 WARNINGS: 0 FAILED: 4 + 1. Error: warnings and errors are properly returned (@test-print_xpose_plots.R#19) + 2. Error: common graphical device work properly (@test-xpose_save.R#45) + 3. Error: template filenames and auto file extension work properly (@test-xpose_save.R#67) + 4. Error: mutlitple pages are properly saved (@test-xpose_save.R#80) + + Error: testthat unit tests failed + Execution halted + ```