Merge pull request #1330 from benjeffery/fix_stat_test

benjeffery · web-flow · commit a09fefd993a3 · 2021-04-26T13:16:08.000+01:00
Use jukes cantor instead of msprime for failing test
diff --git a/python/tests/test_tree_stats.py b/python/tests/test_tree_stats.py
@@ -860,7 +860,7 @@ def test_wright_fisher_simplified(self):
         )
         tables.sort()
         ts = tables.tree_sequence().simplify()
-        ts = msprime.mutate(ts, rate=0.01, random_seed=42)
+        ts = tsutil.jukes_cantor(ts, 10, 0.01, seed=1)
         assert ts.num_sites > 0
         self.verify(ts)
 

Original file line number	Diff line number	Diff line change
`@@ -860,7 +860,7 @@ def test_wright_fisher_simplified(self):`
`860`	`860`	`)`
`861`	`861`	`tables.sort()`
`862`	`862`	`ts = tables.tree_sequence().simplify()`
`863`		`- ts = msprime.mutate(ts, rate=0.01, random_seed=42)`
	`863`	`+ ts = tsutil.jukes_cantor(ts, 10, 0.01, seed=1)`
`864`	`864`	`assert ts.num_sites > 0`
`865`	`865`	`self.verify(ts)`
`866`	`866`