Allen Institute for Neural Dynamics
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aind-data-schema
aind-data-schema PublicA library that defines AIND data schema and validates JSON.
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aind-ephys-spikesort-kilosort25-full
aind-ephys-spikesort-kilosort25-full PublicCodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.
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aind-ephys-pipeline
aind-ephys-pipeline PublicAIND pipeline for processing extracellular electrophysiology data
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openscope-community-predictive-processing
openscope-community-predictive-processing PublicThis repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.
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segmentation-skeleton-metrics
segmentation-skeleton-metrics PublicA Python package for evaluating the topological accuracy of a neuron segmentation by computing skeleton-based metrics.
Python 8
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ibl-ephys-alignment-gui
ibl-ephys-alignment-gui PublicForked from int-brain-lab/iblapps
Tool for aligning electrophysiological features to anatomical landmarks
Repositories
- balloon-animal Public
AllenNeuralDynamics/balloon-animal’s past year of commit activity - openscope-community-predictive-processing Public
This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.
AllenNeuralDynamics/openscope-community-predictive-processing’s past year of commit activity - aind-ophys-nwb Public
Write NWB files for data generated with two-photon ophys pipelines (currently multiplane only)
AllenNeuralDynamics/aind-ophys-nwb’s past year of commit activity - aind-smartspim-ccf-registration Public
Registration of lightsheet whole brain images to the Allen CCF V3 Atlas
AllenNeuralDynamics/aind-smartspim-ccf-registration’s past year of commit activity