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@AllenNeuralDynamics

Allen Institute for Neural Dynamics

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  1. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 26 17

  2. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 12 3

  3. aind-ephys-pipeline aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    Nextflow 12 6

  4. openscope-community-predictive-processing openscope-community-predictive-processing Public

    This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.

    Python 12 12

  5. segmentation-skeleton-metrics segmentation-skeleton-metrics Public

    A Python package for evaluating the topological accuracy of a neuron segmentation by computing skeleton-based metrics.

    Python 8

  6. ibl-ephys-alignment-gui ibl-ephys-alignment-gui Public

    Forked from int-brain-lab/iblapps

    Tool for aligning electrophysiological features to anatomical landmarks

    Python 8 3

Repositories

Showing 10 of 432 repositories
  • aind-metadata-service Public

    Service to retrieve Labtracks/Sharepoint info using a REST API

    AllenNeuralDynamics/aind-metadata-service’s past year of commit activity
    Python 3 MIT 1 13 2 Updated Jul 16, 2025
  • AllenNeuralDynamics/balloon-animal’s past year of commit activity
    Python 0 0 6 1 Updated Jul 16, 2025
  • thalmanac Public
    AllenNeuralDynamics/thalmanac’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Jul 16, 2025
  • abc-merfish-analysis Public

    Shared tools for accessing and processing ABC Atlas MERSCOPE data.

    AllenNeuralDynamics/abc-merfish-analysis’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jul 15, 2025
  • aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    AllenNeuralDynamics/aind-data-schema’s past year of commit activity
    Python 26 MIT 17 12 2 Updated Jul 15, 2025
  • openscope-community-predictive-processing Public

    This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.

    AllenNeuralDynamics/openscope-community-predictive-processing’s past year of commit activity
    Python 12 MIT 12 30 1 Updated Jul 15, 2025
  • aind-ophys-nwb Public

    Write NWB files for data generated with two-photon ophys pipelines (currently multiplane only)

    AllenNeuralDynamics/aind-ophys-nwb’s past year of commit activity
    Jupyter Notebook 1 MIT 0 9 2 Updated Jul 15, 2025
  • parallax Public

    Automatic detection of probe position from multiple camera views

    AllenNeuralDynamics/parallax’s past year of commit activity
    Python 5 MIT 1 7 2 Updated Jul 15, 2025
  • aind-smartspim-ccf-registration Public

    Registration of lightsheet whole brain images to the Allen CCF V3 Atlas

    AllenNeuralDynamics/aind-smartspim-ccf-registration’s past year of commit activity
    Python 4 MIT 5 7 1 Updated Jul 15, 2025
  • aind-metadata-upgrader Public

    Upgrade JSON metadata from old versions of aind-data-schema

    AllenNeuralDynamics/aind-metadata-upgrader’s past year of commit activity
    Python 1 MIT 1 5 1 Updated Jul 15, 2025