A framework to process and analyse multi-modal single-cell data. Linkapy is mainly used to process single-cell methylation data, and is focused on creating an integrated (muData) object of multimodal single-cell data. In this context it means that multiple modalities (e.g. accessibility, DNA methylation, RNA expression) are available from the same cell.
Note that this package is still in development and is prone to change without notice. A rudimentary documentation is available.
pip install linkapy
linkapy --help