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HiDiH - Hub for Innovations in Digital Health

12 followers
Berlin, Germany
https://www.hidih.org/
@HiDiHlabs
info@hidih.org

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ssam ssam Public archive

Python 28 11
htslib-js htslib-js Public

CMake 10 1
sainsc sainsc Public

Segmentation-free Analysis of In Situ Capture data

Python 9
PanCanQC PanCanQC Public

Perl 8 3
YAPSA YAPSA Public

R 7
SpatialLeiden SpatialLeiden Public

Implementation of multiplex Leiden for analysis of spatial omics data

Python 7

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Showing 10 of 38 repositories

sainsc Public
Segmentation-free Analysis of In Situ Capture data

HiDiHlabs/sainsc’s past year of commit activity

Python 9 MIT 0 1 0 Updated Jun 4, 2025
ovrl.py Public
A python tool to investigate cell overlaps in imaging-based spatial transcriptomics data.

HiDiHlabs/ovrl.py’s past year of commit activity

Python 2 MIT 0 1 1 Updated Jun 3, 2025
ovrlpy-publication Public
Code to reproduce ovrlpy paper

HiDiHlabs/ovrlpy-publication’s past year of commit activity

1 MIT 0 0 0 Updated Jun 2, 2025
siNET_omics_analysis Public
siNET_omics_analysis

HiDiHlabs/siNET_omics_analysis’s past year of commit activity

Jupyter Notebook 0 MIT 0 0 0 Updated May 26, 2025
panNEC_study2025 Public

HiDiHlabs/panNEC_study2025’s past year of commit activity

Jupyter Notebook 0 1 0 0 Updated May 16, 2025
computational-oncology-group Public

HiDiHlabs/computational-oncology-group’s past year of commit activity

HTML 1 1 0 0 Updated Apr 30, 2025
SpatialLeiden Public
Implementation of multiplex Leiden for analysis of spatial omics data

HiDiHlabs/SpatialLeiden’s past year of commit activity

Python 7 MIT 0 3 0 Updated Apr 8, 2025
multiSPAETI Public
Implementation of MULTISPATI-PCA in Python

HiDiHlabs/multiSPAETI’s past year of commit activity

Python 3 MIT 1 1 1 Updated Apr 8, 2025
umi_alignment Public
A snakemake pipeline for aligning UMI based WGS data and QC metrics associated with it

HiDiHlabs/umi_alignment’s past year of commit activity

Python 1 MIT 0 7 2 Updated Apr 7, 2025
sonar Public
Analytic and generative algorithm on co-occurrences in 2d maps

HiDiHlabs/sonar’s past year of commit activity

2 MIT 0 0 0 Updated Mar 16, 2025

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