Build fails on Ubuntu 11.10

[hsmyers]

Fails during what I presume is the 'testing' phase:

           CALL STEST1(DASUM(N,SX,INCX),STEMP,STEMP,SFAC)           
                                        1

Warning: Rank mismatch in argument 'strue1' at (1) (scalar and rank-1)
Illegal instruction
make[4]: *** [level1] Error 132
make[3]: *** [tests] Error 2
make[2]: *** [openblas-v0.1alpha2.5/libopenblas.a] Error 2
make[1]: *** [julia-release] Error 2
make: *** [release] Error 2

This does not seem related to the library issue cautioned against as I already had the most current version of that installed.

--hsm

[mvanderkolff]

By using a different Make.inc, you can work around this - I had it using most of the system libraries, apart from LLVM (since 3.0 isn't packaged for 11.10), as well as ARPACK, which seems to conflict with libopal-dev, which I need on my system. These shouldn't really conflict, and I'll try to find out why, but the point is you can just edit your Make.inc to get it to build.

Michael (who built Julia on his 11.10 laptop) :)

[hsmyers]

Thanks for the reply. That said, I'm not certain what you
mean---remove the reference to libopal-dev and substitute what for it?
Or just remove it?

--hsm

On Tue, Mar 13, 2012 at 6:20 PM, Michael van der Kolff
reply@reply.github.com
wrote:

By using a different Make.inc, you can work around this - I had it using most of the system libraries, apart from LLVM (since 3.0 isn't packaged for 11.10), as well as ARPACK, which seems to conflict with libopal-dev, which I need on my system.  These shouldn't really conflict, and I'll try to find out why, but the point is you can just edit your Make.inc to get it to build.

Michael (who built Julia on his 11.10 laptop) :)

---

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#578 (comment)

[hsmyers]

I just noticed that you could have meant removing the reference to
ARPACK. Is that what you meant?

--hsm

On Tue, Mar 13, 2012 at 7:11 PM, Hugh Myers hsmyers@gmail.com wrote:

Thanks for the reply. That said, I'm not certain what you
mean---remove the reference to libopal-dev and substitute what for it?
Or just remove it?

--hsm

On Tue, Mar 13, 2012 at 6:20 PM, Michael van der Kolff
reply@reply.github.com
wrote:

By using a different Make.inc, you can work around this - I had it using most of the system libraries, apart from LLVM (since 3.0 isn't packaged for 11.10), as well as ARPACK, which seems to conflict with libopal-dev, which I need on my system.  These shouldn't really conflict, and I'll try to find out why, but the point is you can just edit your Make.inc to get it to build.

Michael (who built Julia on his 11.10 laptop) :)

---

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#578 (comment)

[Keno]

I think what he meant was

[hsmyers]

OK, that is certainly do-able, I'll give it a shot...

--hsm

On Tue, Mar 13, 2012 at 7:32 PM, Keno Fischer
reply@reply.github.com
wrote:

I think what he meant was

make USE_SYSTEM_LLVM=0 USE_DEBIAN=1

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#578 (comment)

[hsmyers]

This may be a double post (I don't grok the lack of a 'post' button on git hub)

This fails with:

hsmyers@ubuntu:/julia$ make USE_SYSTEM_LLVM=0 USE_DEBIAN=1
SuiteSparse_wrapper.c:2:21: fatal error: cholmod.h: No such file or directory
compilation terminated.
make[2]: *** [/home/hsmyers/julia/external/root/lib/libsuitesparse_wrapper.so]
Error 1
make[1]: *** [julia-release] Error 2
make: *** [release] Error 2
hsmyers@ubuntu:/julia$

--hsm

On Tue, Mar 13, 2012 at 7:40 PM, Hugh Myers hsmyers@gmail.com wrote:

OK, that is certainly do-able, I'll give it a shot...

--hsm

On Tue, Mar 13, 2012 at 7:32 PM, Keno Fischer
reply@reply.github.com
wrote:

I think what he meant was

make USE_SYSTEM_LLVM=0 USE_DEBIAN=1

---

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#578 (comment)

[Keno]

you could either install the suitesparse-dev package (or something like that - I don't remember what it's called again) or just add USE_SYSTEM_SUITESPARSE=0 to your make command

[hsmyers]

make USE_SYSTEM_LLVM=0 USE_DEBIAN=1 USE_SYSTEM_SUITESPARSE=0
SuiteSparse_wrapper.c:2:21: fatal error: cholmod.h: No such file or directory
compilation terminated.
make[2]: *** [/home/hsmyers/julia/external/root/lib/libsuitesparse_wrapper.so]
Error 1
make[1]: *** [julia-release] Error 2
make: *** [release] Error 2
hsmyers@ubuntu:~/julia$

--hsm

OK, it's not like I've got anything else to do :)

--hsm

On Tue, Mar 13, 2012 at 8:16 PM, Keno Fischer
reply@reply.github.com
wrote:

you could either install the suitesparse-dev package (or something like that - I don't remember what it's called again) or just add USE_SYSTEM_SUITESPARSE=0 to your make command

---

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#578 (comment)

[hsmyers]

chopped off to possibly pertinent lines:

/usr/bin/ld: cannot find -llapack
/usr/bin/ld: cannot find -lblas

--hsm

On Tue, Mar 13, 2012 at 8:44 PM, Hugh Myers hsmyers@gmail.com wrote:

make USE_SYSTEM_LLVM=0 USE_DEBIAN=1 USE_SYSTEM_SUITESPARSE=0
SuiteSparse_wrapper.c:2:21: fatal error: cholmod.h: No such file or directory
compilation terminated.
make[2]: *** [/home/hsmyers/julia/external/root/lib/libsuitesparse_wrapper.so]
Error 1
make[1]: *** [julia-release] Error 2
make: *** [release] Error 2
hsmyers@ubuntu:~/julia$

--hsm

OK, it's not like I've got anything else to do :)

--hsm

On Tue, Mar 13, 2012 at 8:16 PM, Keno Fischer
reply@reply.github.com
wrote:

you could either install the suitesparse-dev package (or something like that - I don't remember what it's called again) or just add USE_SYSTEM_SUITESPARSE=0 to your make command

---

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#578 (comment)

[mvanderkolff]

You need to have the appropriate -dev packages installed. Are they?
If not, try sudo apt-get install liblapack-dev libblas-dev
libunwind7-dev libreadline-dev libpcre3-dev libfftw3-dev libgmp-dev
libsuitesparse-dev

I used the ARPACK that Julia downloads (so USE_SYSTEM_ARPACK=0), since
libarpack2-dev conflicts with libopal-dev. This may not be a problem
for you, though... If you're happy with that, install libarpack2-dev
as well

Cheers,

Michael

On Wed, Mar 14, 2012 at 1:50 PM, hsmyers
reply@reply.github.com
wrote:

chopped off to possibly pertinent lines:

/usr/bin/ld: cannot find -llapack
/usr/bin/ld: cannot find -lblas

--hsm

On Tue, Mar 13, 2012 at 8:44 PM, Hugh Myers hsmyers@gmail.com wrote:

make USE_SYSTEM_LLVM=0 USE_DEBIAN=1 USE_SYSTEM_SUITESPARSE=0
SuiteSparse_wrapper.c:2:21: fatal error: cholmod.h: No such file or directory
compilation terminated.
make[2]: *** [/home/hsmyers/julia/external/root/lib/libsuitesparse_wrapper.so]
Error 1
make[1]: *** [julia-release] Error 2
make: *** [release] Error 2
hsmyers@ubuntu:~/julia$

--hsm

OK, it's not like I've got anything else to do :)

--hsm

On Tue, Mar 13, 2012 at 8:16 PM, Keno Fischer
reply@reply.github.com
wrote:

you could either install the suitesparse-dev package (or something like that - I don't remember what it's called again) or just add USE_SYSTEM_SUITESPARSE=0 to your make command

---

Reply to this email directly or view it on GitHub:
#578 (comment)

---

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#578 (comment)

[hsmyers]

No luck. After much app-getting, followed by a great deal of grinding, only to
get:

JULIA sys0.ji

libsuitesparse.so: cannot open shared object file: No such file or directory

make[1]: *** [sys0.ji] Error 1
make: *** [release] Error 2
hsmyers@ubuntu:/julia$ locate libsuitesparse.so
/usr/share/julia/lib/libsuitesparse.so
hsmyers@ubuntu:/julia$

---hsm

On Tue, Mar 13, 2012 at 10:12 PM, Michael van der Kolff
reply@reply.github.com
wrote:

You need to have the appropriate -dev packages installed.  Are they?
If not, try sudo apt-get install liblapack-dev libblas-dev
libunwind7-dev libreadline-dev libpcre3-dev libfftw3-dev libgmp-dev
libsuitesparse-dev

I used the ARPACK that Julia downloads (so USE_SYSTEM_ARPACK=0), since
libarpack2-dev conflicts with libopal-dev.  This may not be a problem
for you, though... If you're happy with that, install libarpack2-dev
as well

Cheers,

Michael

On Wed, Mar 14, 2012 at 1:50 PM, hsmyers
reply@reply.github.com
wrote:

chopped off to possibly pertinent lines:

/usr/bin/ld: cannot find -llapack
/usr/bin/ld: cannot find -lblas

--hsm

On Tue, Mar 13, 2012 at 8:44 PM, Hugh Myers hsmyers@gmail.com wrote:

make USE_SYSTEM_LLVM=0 USE_DEBIAN=1 USE_SYSTEM_SUITESPARSE=0
SuiteSparse_wrapper.c:2:21: fatal error: cholmod.h: No such file or directory
compilation terminated.
make[2]: *** [/home/hsmyers/julia/external/root/lib/libsuitesparse_wrapper.so]
Error 1
make[1]: *** [julia-release] Error 2
make: *** [release] Error 2
hsmyers@ubuntu:~/julia$

--hsm

OK, it's not like I've got anything else to do :)

--hsm

On Tue, Mar 13, 2012 at 8:16 PM, Keno Fischer
reply@reply.github.com
wrote:

you could either install the suitesparse-dev package (or something like that - I don't remember what it's called again) or just add USE_SYSTEM_SUITESPARSE=0 to your make command

---

Reply to this email directly or view it on GitHub:
#578 (comment)

---

Reply to this email directly or view it on GitHub:
#578 (comment)

---

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#578 (comment)

[hsmyers]

Possibly relevant; after the apt-get for libsuitesparse-dev it concludes with:

Processing triggers for libc-bin ...
ldconfig deferred processing now taking place
/sbin/ldconfig.real: /usr/local/lib/libstdc++.so.6.0.16-gdb.py is not
an ELF file - it has the wrong magic bytes at the start.

with the (to me) possible sugestion that the libsuitesparse.so is not
in the correct location?

--hsm

On Wed, Mar 14, 2012 at 4:34 AM, Hugh Myers hsmyers@gmail.com wrote:

No luck. After much app-getting, followed by a great deal of grinding, only to
get:

   JULIA sys0.ji
libsuitesparse.so: cannot open shared object file: No such file or directory

make[1]: *** [sys0.ji] Error 1
make: *** [release] Error 2
hsmyers@ubuntu:/julia$ locate libsuitesparse.so
/usr/share/julia/lib/libsuitesparse.so
hsmyers@ubuntu:/julia$

---hsm

On Tue, Mar 13, 2012 at 10:12 PM, Michael van der Kolff
reply@reply.github.com
wrote:

You need to have the appropriate -dev packages installed.  Are they?
If not, try sudo apt-get install liblapack-dev libblas-dev
libunwind7-dev libreadline-dev libpcre3-dev libfftw3-dev libgmp-dev
libsuitesparse-dev

I used the ARPACK that Julia downloads (so USE_SYSTEM_ARPACK=0), since
libarpack2-dev conflicts with libopal-dev.  This may not be a problem
for you, though... If you're happy with that, install libarpack2-dev
as well

Cheers,

Michael

On Wed, Mar 14, 2012 at 1:50 PM, hsmyers
reply@reply.github.com
wrote:

chopped off to possibly pertinent lines:

/usr/bin/ld: cannot find -llapack
/usr/bin/ld: cannot find -lblas

--hsm

On Tue, Mar 13, 2012 at 8:44 PM, Hugh Myers hsmyers@gmail.com wrote:

make USE_SYSTEM_LLVM=0 USE_DEBIAN=1 USE_SYSTEM_SUITESPARSE=0
SuiteSparse_wrapper.c:2:21: fatal error: cholmod.h: No such file or directory
compilation terminated.
make[2]: *** [/home/hsmyers/julia/external/root/lib/libsuitesparse_wrapper.so]
Error 1
make[1]: *** [julia-release] Error 2
make: *** [release] Error 2
hsmyers@ubuntu:~/julia$

--hsm

OK, it's not like I've got anything else to do :)

--hsm

On Tue, Mar 13, 2012 at 8:16 PM, Keno Fischer
reply@reply.github.com
wrote:

you could either install the suitesparse-dev package (or something like that - I don't remember what it's called again) or just add USE_SYSTEM_SUITESPARSE=0 to your make command

---

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#578 (comment)

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#578 (comment)

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#578 (comment)

[ViralBShah]

I am working on a set of fixes for the library stuff that ought to fix this.

[hsmyers]

Great! I'll try them out as soon as you give the go ahead. I ask that
you couch the instructions for the 'complete idiot' as I've always had
the ability to miss-understand what may seem obvious to others :)

--hsm

On Wed, Mar 14, 2012 at 10:09 PM, Viral B. Shah
reply@reply.github.com
wrote:

I am working on a set of fixes for the library stuff that ought to fix this.

---

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#578 (comment)

[ViralBShah]

This is really a dependency on #353. Hence will get addressed when #353 is fixed.