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wyli opened this issue Oct 28, 2022 · 0 comments · Fixed by #5426
Closed

conda test errors #5425

wyli opened this issue Oct 28, 2022 · 0 comments · Fixed by #5426
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wyli commented Oct 28, 2022

Describe the bug
original log: https://github.com/Project-MONAI/MONAI/actions/runs/3342606607

======================================================================
FAIL: test_write_5d (tests.test_nifti_rw.TestNiftiLoadRead)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/runner/work/MONAI/MONAI/tests/test_nifti_rw.py", line 244, in test_write_5d
    np.testing.assert_allclose(out.get_fdata(), np.array([[[[[0.0, 2.0]], [[4.0, 5.0]], [[7.0, 9.0]]]]]))
  File "/usr/share/miniconda/envs/monai/lib/python3.9/site-packages/numpy/testing/_private/utils.py", line 1530, in assert_allclose
    assert_array_compare(compare, actual, desired, err_msg=str(err_msg),
  File "/usr/share/miniconda/envs/monai/lib/python3.9/site-packages/numpy/testing/_private/utils.py", line 844, in assert_array_compare
    raise AssertionError(msg)
AssertionError: 
Not equal to tolerance rtol=1e-07, atol=0

Mismatched elements: 1 / 6 (16.7%)
Max absolute difference: 0.
Max relative difference: 0.
 x: array([[[[[0., 2.]],

         [[4., 5.]],...
 y: array([[[[[0., 2.]],

         [[4., 5.]],...

----------------------------------------------------------------------
Ran 9305 tests in 996.256s

FAILED (failures=4, skipped=601)
@wyli wyli self-assigned this Oct 28, 2022
@wyli wyli mentioned this issue Oct 28, 2022
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@wyli wyli closed this as completed in 3f82016 Oct 28, 2022
wyli added a commit that referenced this issue Oct 31, 2022
@wyli
fixes integration tests, similar with #5425
15159db 
Signed-off-by: Wenqi Li <[email protected]>
KumoLiu pushed a commit that referenced this issue Nov 2, 2022
@wyli @KumoLiu
5425 conda tests (#5426)
2b16466 
Fixes #5425

tested: https://github.com/Project-MONAI/MONAI/actions/runs/3344552788

### Types of changes
<!--- Put an `x` in all the boxes that apply, and remove the not
applicable items -->
- [x] Non-breaking change (fix or new feature that would not break
existing functionality).
- [ ] Breaking change (fix or new feature that would cause existing
functionality to change).
- [ ] New tests added to cover the changes.
- [ ] Integration tests passed locally by running `./runtests.sh -f -u
--net --coverage`.
- [ ] Quick tests passed locally by running `./runtests.sh --quick
--unittests --disttests`.
- [ ] In-line docstrings updated.
- [ ] Documentation updated, tested `make html` command in the `docs/`
folder.

Signed-off-by: Wenqi Li <[email protected]>
Signed-off-by: KumoLiu <[email protected]>
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5425 conda tests Project-MONAI/MONAI
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