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Make iteration-base training params epoch-base in auto3dseg #1213

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Merged
merged 4 commits into from
Feb 12, 2023

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@mingxin-zheng mingxin-zheng commented Feb 12, 2023

Signed-off-by: Mingxin Zheng [email protected]

Fixes #1212

Description

A few sentences describing the changes proposed in this pull request.

Checks

  • Avoid including large-size files in the PR.
  • Clean up long text outputs from code cells in the notebook.
  • For security purposes, please check the contents and remove any sensitive info such as user names and private key.
  • Ensure (1) hyperlinks and markdown anchors are working (2) use relative paths for tutorial repo files (3) put figure and graphs in the ./figure folder
  • Notebook runs automatically
    • ./runner.sh -t 'auto3dseg/notebooks/auto3dseg_hello_world.ipynb'
    • ./runner.sh -t 'auto3dseg/notebooks/auto3dseg_autorunner_ref_api.ipynb'
    • ./runner.sh -t 'auto3dseg/notebooks/auto_runner.ipynb'
    • ./runner.sh -t 'auto3dseg/notebooks/hpo_optuna.ipynb'

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@mingxin-zheng mingxin-zheng enabled auto-merge (squash) February 12, 2023 11:26
@mingxin-zheng mingxin-zheng merged commit 6be932f into Project-MONAI:main Feb 12, 2023
@mingxin-zheng mingxin-zheng deleted the fix-1212-auto3dseg branch March 22, 2023 10:05
boneseva pushed a commit to boneseva/MONAI-tutorials that referenced this pull request Apr 21, 2024
…MONAI#1213)

Signed-off-by: Mingxin Zheng
<[email protected]>

Fixes Project-MONAI#1212 

### Description
A few sentences describing the changes proposed in this pull request.

### Checks
<!--- Put an `x` in all the boxes that apply, and remove the not
applicable items -->
- [x] Avoid including large-size files in the PR.
- [x] Clean up long text outputs from code cells in the notebook.
- [x] For security purposes, please check the contents and remove any
sensitive info such as user names and private key.
- [x] Ensure (1) hyperlinks and markdown anchors are working (2) use
relative paths for tutorial repo files (3) put figure and graphs in the
`./figure` folder
- [x] Notebook runs automatically
    - `./runner.sh -t 'auto3dseg/notebooks/auto3dseg_hello_world.ipynb'`
- `./runner.sh -t
'auto3dseg/notebooks/auto3dseg_autorunner_ref_api.ipynb'`
    - `./runner.sh -t 'auto3dseg/notebooks/auto_runner.ipynb'`
    - `./runner.sh -t 'auto3dseg/notebooks/hpo_optuna.ipynb'`

---------

Signed-off-by: Mingxin Zheng <[email protected]>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Wenqi Li <[email protected]>
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Auto3DSeg tutorials should drop all iteration-based calculation for MONAI 1.1
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