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beff92b
feat: validation history
jayceslesar Apr 18, 2025
c369720
format
jayceslesar Apr 18, 2025
41bb8a4
almost a working test
jayceslesar Apr 18, 2025
763e9f4
allow content_filter in snapshot.manifests
jayceslesar Apr 18, 2025
f200beb
simplify order of arguments to validation_history
jayceslesar Apr 18, 2025
7f6bf9d
simplify return in snapshot.manifests
jayceslesar Apr 18, 2025
c63cc55
tests passing
jayceslesar Apr 19, 2025
f2f3a88
correct ancestors_between
jayceslesar Apr 19, 2025
74d5569
fix to/from logic and allow optional `to_snapshot` arg in `validation…
jayceslesar Apr 19, 2025
167f9e4
remove a level of nesting with smarter clause
jayceslesar Apr 19, 2025
efe50b4
fix bad accessor
jayceslesar Apr 19, 2025
0793713
fix docstring
jayceslesar Apr 19, 2025
b10a0bf
Merge branch 'main' into feat/validation-history
jayceslesar Apr 19, 2025
d57133e
move `ValidationException` to `exceptions.py`, make `to_snapshot` req…
jayceslesar Apr 22, 2025
6ef1aa2
default to `Operation.OVERWRITE` in `validation_history` if summary i…
jayceslesar Apr 22, 2025
fce608f
preserve order of snapshots by changing response to a list instead of…
jayceslesar Apr 22, 2025
a6624d9
validation_history and from_ancestor argument alignment
jayceslesar Apr 23, 2025
0763056
raise error on summary operation being none in validation_history
jayceslesar Apr 23, 2025
cd0146f
Merge branch 'main' into feat/validation-history
jayceslesar Apr 23, 2025
d7c7088
Merge branch 'main' into feat/validation-history
jayceslesar Apr 24, 2025
fe8d103
Update pyiceberg/table/update/validate.py
jayceslesar Apr 24, 2025
f8c5fee
Update pyiceberg/table/update/validate.py
jayceslesar Apr 24, 2025
d95e6ed
formatting
jayceslesar Apr 24, 2025
87ee601
remove emoji (lol)
jayceslesar Apr 27, 2025
c16a3e6
vix validation exception check
jayceslesar Apr 27, 2025
e272b26
fix bug in ancestors_between
jayceslesar Apr 27, 2025
727845b
break into separate test
jayceslesar Apr 27, 2025
e2bba3f
Merge branch 'main' into feat/validation-history
jayceslesar Apr 27, 2025
a74d7a9
add test that ensures we raise an error
jayceslesar Apr 30, 2025
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4 changes: 4 additions & 0 deletions pyiceberg/exceptions.py
Original file line number Diff line number Diff line change
Expand Up @@ -122,3 +122,7 @@ class CommitStateUnknownException(RESTError):

class WaitingForLockException(Exception):
"""Need to wait for a lock, try again."""


class ValidationException(Exception):
"""Raised when validation fails."""
13 changes: 13 additions & 0 deletions pyiceberg/table/snapshots.py
Original file line number Diff line number Diff line change
Expand Up @@ -435,3 +435,16 @@ def ancestors_of(current_snapshot: Optional[Snapshot], table_metadata: TableMeta
if snapshot.parent_snapshot_id is None:
break
snapshot = table_metadata.snapshot_by_id(snapshot.parent_snapshot_id)


def ancestors_between(
to_snapshot: Snapshot, from_snapshot: Optional[Snapshot], table_metadata: TableMetadata
) -> Iterable[Snapshot]:
"""Get the ancestors of and including the given snapshot between the to and from snapshots."""
if from_snapshot is not None:
for snapshot in ancestors_of(to_snapshot, table_metadata):
if snapshot == from_snapshot:
break
yield snapshot
else:
yield from ancestors_of(to_snapshot, table_metadata)
71 changes: 71 additions & 0 deletions pyiceberg/table/update/validate.py
Original file line number Diff line number Diff line change
@@ -0,0 +1,71 @@
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not use this file except in compliance
# with the License. You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing,
# software distributed under the License is distributed on an
# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
# KIND, either express or implied. See the License for the
# specific language governing permissions and limitations
# under the License.

from pyiceberg.exceptions import ValidationException
from pyiceberg.manifest import ManifestContent, ManifestFile
from pyiceberg.table import Table
from pyiceberg.table.snapshots import Operation, Snapshot, ancestors_between


def validation_history(
table: Table,
to_snapshot: Snapshot,
from_snapshot: Snapshot,
matching_operations: set[Operation],
manifest_content_filter: ManifestContent,
) -> tuple[list[ManifestFile], set[int]]:
"""Return newly added manifests and snapshot IDs between the starting snapshot and parent snapshot.

Args:
table: Table to get the history from
to_snapshot: Starting snapshot
from_snapshot: Parent snapshot to get the history from
matching_operations: Operations to match on
manifest_content_filter: Manifest content type to filter

Raises:
ValidationException: If no matching snapshot is found or only one snapshot is found

Returns:
List of manifest files and set of snapshots ID's matching conditions
"""
manifests_files: list[ManifestFile] = []
snapshots: set[int] = set()

last_snapshot = None
for snapshot in ancestors_between(to_snapshot, from_snapshot, table.metadata):
last_snapshot = snapshot
summary = snapshot.summary
if summary is None:
raise ValidationException(f"No summary found for snapshot {snapshot}!")
if summary.operation not in matching_operations:
continue

if snapshot not in snapshots:
snapshots.add(snapshot.snapshot_id)
manifests_files.extend(
[
manifest
for manifest in snapshot.manifests(table.io)
if manifest.added_snapshot_id == snapshot.snapshot_id and manifest.content == manifest_content_filter
]
)

if last_snapshot is None or last_snapshot.snapshot_id == from_snapshot.snapshot_id:
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Suggested change
if last_snapshot is None or last_snapshot.snapshot_id == from_snapshot.snapshot_id:
if last_snapshot is not None and last_snapshot.snapshot_id != from_snapshot.snapshot_id:
`if not (last_snapshot is not None and last_snapshot.snapshot_id != from_snapshot.snapshot_id):`

The ValidationCheck in java throws an Exception with the provided error message if the boolean condition in doesn't hold. So we'd actually be throwing in the inverse of this condition.

https://github.com/apache/iceberg/blob/22d194f5d685fdf5bec17c6bcc92a69db4ae4957/api/src/main/java/org/apache/iceberg/exceptions/ValidationException.java#L47-L50

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Made this change

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Awesome, changing this to be correct also caught an issue with ancestors_between that is not fixed!

raise ValidationException("No matching snapshot found.")
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We can leave it like this for now, but it seems odd to throw here, since there is no history to validate, which in turn is valid.

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This has been fixed!


return manifests_files, snapshots
39 changes: 0 additions & 39 deletions tests/table/test_init.py
Original file line number Diff line number Diff line change
Expand Up @@ -57,7 +57,6 @@
Snapshot,
SnapshotLogEntry,
Summary,
ancestors_of,
)
from pyiceberg.table.sorting import (
NullOrder,
Expand Down Expand Up @@ -225,44 +224,6 @@ def test_snapshot_by_timestamp(table_v2: Table) -> None:
assert table_v2.snapshot_as_of_timestamp(1515100955770, inclusive=False) is None


def test_ancestors_of(table_v2: Table) -> None:
assert list(ancestors_of(table_v2.current_snapshot(), table_v2.metadata)) == [
Snapshot(
snapshot_id=3055729675574597004,
parent_snapshot_id=3051729675574597004,
sequence_number=1,
timestamp_ms=1555100955770,
manifest_list="s3://a/b/2.avro",
summary=Summary(Operation.APPEND),
schema_id=1,
),
Snapshot(
snapshot_id=3051729675574597004,
parent_snapshot_id=None,
sequence_number=0,
timestamp_ms=1515100955770,
manifest_list="s3://a/b/1.avro",
summary=Summary(Operation.APPEND),
schema_id=None,
),
]


def test_ancestors_of_recursive_error(table_v2_with_extensive_snapshots: Table) -> None:
# Test RecursionError: maximum recursion depth exceeded
assert (
len(
list(
ancestors_of(
table_v2_with_extensive_snapshots.current_snapshot(),
table_v2_with_extensive_snapshots.metadata,
)
)
)
== 2000
)


def test_snapshot_by_id_does_not_exist(table_v2: Table) -> None:
assert table_v2.snapshot_by_id(-1) is None

Expand Down
68 changes: 67 additions & 1 deletion tests/table/test_snapshots.py
Original file line number Diff line number Diff line change
Expand Up @@ -15,12 +15,23 @@
# specific language governing permissions and limitations
# under the License.
# pylint:disable=redefined-outer-name,eval-used
from typing import cast

import pytest

from pyiceberg.manifest import DataFile, DataFileContent, ManifestContent, ManifestFile
from pyiceberg.partitioning import PartitionField, PartitionSpec
from pyiceberg.schema import Schema
from pyiceberg.table.snapshots import Operation, Snapshot, SnapshotSummaryCollector, Summary, update_snapshot_summaries
from pyiceberg.table import Table
from pyiceberg.table.snapshots import (
Operation,
Snapshot,
SnapshotSummaryCollector,
Summary,
ancestors_between,
ancestors_of,
update_snapshot_summaries,
)
from pyiceberg.transforms import IdentityTransform
from pyiceberg.typedef import Record
from pyiceberg.types import (
Expand Down Expand Up @@ -333,3 +344,58 @@ def test_invalid_type() -> None:
)

assert "Could not parse summary property total-data-files to an int: abc" in str(e.value)


def test_ancestors_of(table_v2: Table) -> None:
assert list(ancestors_of(table_v2.current_snapshot(), table_v2.metadata)) == [
Snapshot(
snapshot_id=3055729675574597004,
parent_snapshot_id=3051729675574597004,
sequence_number=1,
timestamp_ms=1555100955770,
manifest_list="s3://a/b/2.avro",
summary=Summary(Operation.APPEND),
schema_id=1,
),
Snapshot(
snapshot_id=3051729675574597004,
parent_snapshot_id=None,
sequence_number=0,
timestamp_ms=1515100955770,
manifest_list="s3://a/b/1.avro",
summary=Summary(Operation.APPEND),
schema_id=None,
),
]


def test_ancestors_of_recursive_error(table_v2_with_extensive_snapshots: Table) -> None:
# Test RecursionError: maximum recursion depth exceeded
assert (
len(
list(
ancestors_of(
table_v2_with_extensive_snapshots.current_snapshot(),
table_v2_with_extensive_snapshots.metadata,
)
)
)
== 2000
)


def test_ancestors_between(table_v2_with_extensive_snapshots: Table) -> None:
oldest_snapshot = table_v2_with_extensive_snapshots.snapshots()[0]
current_snapshot = cast(Snapshot, table_v2_with_extensive_snapshots.current_snapshot())
assert (
len(
list(
ancestors_between(
current_snapshot,
oldest_snapshot,
table_v2_with_extensive_snapshots.metadata,
)
)
)
== 1999
)
88 changes: 88 additions & 0 deletions tests/table/test_validate.py
Original file line number Diff line number Diff line change
@@ -0,0 +1,88 @@
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not use this file except in compliance
# with the License. You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing,
# software distributed under the License is distributed on an
# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
# KIND, either express or implied. See the License for the
# specific language governing permissions and limitations
# under the License.
# pylint:disable=redefined-outer-name,eval-used
from typing import cast
from unittest.mock import patch

import pytest

from pyiceberg.exceptions import ValidationException
from pyiceberg.io import FileIO
from pyiceberg.manifest import ManifestContent, ManifestFile
from pyiceberg.table import Table
from pyiceberg.table.snapshots import Operation, Snapshot
from pyiceberg.table.update.validate import validation_history


def test_validation_history(table_v2_with_extensive_snapshots: Table) -> None:
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Could we add another test which tests the expected failure when from_snapshot value doesn't match a snapshot in the history of the table?

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Added!

"""Test the validation history function."""
mock_manifests = {}

for i, snapshot in enumerate(table_v2_with_extensive_snapshots.snapshots()):
mock_manifest = ManifestFile.from_args(
manifest_path=f"foo/bar/{i}",
manifest_length=1,
partition_spec_id=1,
content=ManifestContent.DATA if i % 2 == 0 else ManifestContent.DELETES,
sequence_number=1,
min_sequence_number=1,
added_snapshot_id=snapshot.snapshot_id,
)

# Store the manifest for this specific snapshot
mock_manifests[snapshot.snapshot_id] = [mock_manifest]

expected_manifest_data_counts = len([m for m in mock_manifests.values() if m[0].content == ManifestContent.DATA]) - 1

oldest_snapshot = table_v2_with_extensive_snapshots.snapshots()[0]
newest_snapshot = cast(Snapshot, table_v2_with_extensive_snapshots.current_snapshot())

def mock_read_manifest_side_effect(self: Snapshot, io: FileIO) -> list[ManifestFile]:
"""Mock the manifests method to use the snapshot_id for lookup."""
snapshot_id = self.snapshot_id
if snapshot_id in mock_manifests:
return mock_manifests[snapshot_id]
return []

with patch("pyiceberg.table.snapshots.Snapshot.manifests", new=mock_read_manifest_side_effect):
manifests, snapshots = validation_history(
table_v2_with_extensive_snapshots,
newest_snapshot,
oldest_snapshot,
{Operation.APPEND},
ManifestContent.DATA,
)

assert len(manifests) == expected_manifest_data_counts

snapshot_with_no_summary = Snapshot(
snapshot_id="1234",
parent_id="5678",
timestamp_ms=0,
operation=Operation.APPEND,
summary=None,
manifest_list="foo/bar",
)
with patch("pyiceberg.table.update.validate.ancestors_between", return_value=[snapshot_with_no_summary]):
with pytest.raises(ValidationException):
validation_history(
table_v2_with_extensive_snapshots,
newest_snapshot,
oldest_snapshot,
{Operation.APPEND},
ManifestContent.DATA,
)
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I think it would be best to create a separate test function that tests this failure case, like test_validation_history_fails_on_snapshot_with_no_summary

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Done