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Apr 20, 2016
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more External links #35

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4e0e34c
Correct link to wikipedia
Apr 20, 2016
a708262
updated link to point to David Kidd Postdoctoral Fellow page at NESCent
Apr 20, 2016
da6fd22
Updated broken link and current bio and page for Nick Matzke
Apr 20, 2016
a47b0c2
Update installer information for windows version of git
Apr 20, 2016
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2 changes: 1 addition & 1 deletion wiki/Active_projects.md
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Expand Up @@ -64,7 +64,7 @@ See the project proposal at: [Biogeographical Phylogenetics for
BioPython](http://socghop.appspot.com/student_project/show/google/gsoc2009/nescent/t124022798250).
The mentors were [Stephen Smith](http://blackrim.org/) (primary), [Brad
Chapman](http://bcbio.wordpress.com/), and [David
Kidd](http://evoviz.nescent.org/). The new module is documented on this
Kidd](https://www.nescent.org/science/awards_summary.php-id=59.html). The new module is documented on this
wiki as [BioGeography](BioGeography "wikilink").

The code currently lives at the Bio/Geography directory of Nick's
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4 changes: 2 additions & 2 deletions wiki/BioGeography.md
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Expand Up @@ -16,7 +16,7 @@ See the project proposal at: [Biogeographical Phylogenetics for
BioPython](http://socghop.appspot.com/student_project/show/google/gsoc2009/nescent/t124022798250).
The mentors are [Stephen Smith](http://blackrim.org/) (primary), [Brad
Chapman](http://bcbio.wordpress.com/), and [David
Kidd](http://evoviz.nescent.org/). The source code is in the
Kidd](https://www.nescent.org/science/awards_summary.php-id=59.html). The source code is in the
Bio/Geography directory of the [Geography fork of the nmatzke branch on
GitHub](http://github.com/nmatzke/biopython/tree/Geography), and you can
see a timeline and other info about ongoing development of the module
Expand Down Expand Up @@ -53,7 +53,7 @@ See the project proposal at: [Biogeographical Phylogenetics for
BioPython](http://socghop.appspot.com/student_project/show/google/gsoc2009/nescent/t124022798250).
The mentors are [Stephen Smith](http://blackrim.org/) (primary), [Brad
Chapman](http://bcbio.wordpress.com/), and [David
Kidd](http://evoviz.nescent.org/). The source code is in the
Kidd](https://www.nescent.org/science/awards_summary.php-id=59.html). The source code is in the
Bio/Geography directory of the [Geography fork of the nmatzke branch on
GitHub](http://github.com/nmatzke/biopython/tree/Geography), and you can
see a timeline and other info about ongoing development of the module
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23 changes: 2 additions & 21 deletions wiki/GitUsage.md
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Expand Up @@ -88,27 +88,8 @@ Download the `.dmg` disk image from

### Windows

Two options exist for Windows:
[msysGit](http://code.google.com/p/msysgit/) and running Git under
[Cygwin](http://www.cygwin.com/).

#### msysGit (Recommended)

[msysGit](http://code.google.com/p/msysgit/) is a port of Git that runs
natively on Windows via the MinGW library. Because Git was not
originally designed to run on Windows, and since this is a port, some
bugs exist, though are rarely encountered in everyday use of Git. See
their website for download and installation instructions. Additionally,
you can watch [Scott Chacon's screencast on installing msysGit on
Windows](http://gitcasts.com/posts/git-on-windows), and see [this GitHub
guide](http://github.com/guides/using-git-and-github-for-the-windows-for-newbies).

#### Cygwin

[Cygwin](http://www.cygwin.com/) provides a Linux-like environment for
Windows. It includes access to repositories of many software packages
available commonly in Linux distributions, including Git. You can find
the `git` package under the "devel" category.
Download the official installers from
[Windows installers](https://git-scm.com/download/win)

Testing your git installation
-----------------------------
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9 changes: 4 additions & 5 deletions wiki/User_Matzke.md
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Expand Up @@ -9,11 +9,10 @@ Nick Matzke is working on the [Google/Phyloinformatics Summer of Code
project "[Biogeographical Phylogenetics for
BioPython](https://www.nescent.org/wg_phyloinformatics/Phyloinformatics_Summer_of_Code_2009#Biogeographical_Phylogenetics_for_BioPython)."

Nick is a Ph.D. candidate in the Department of Integrative Biology at
University of California, Berkeley. [Departmental
page](http://ib.berkeley.edu/people/students/person_detail.php?person=370)
-- [Lab page](http://fisher.berkeley.edu/cteg/members/matzke.html).
Nicholas Matzke is currently a Discovery Early Career Researcher Award fellow in the Division of Evolution, Ecology,
and Genetics, Research School of Biology, at the Australian National University in Canberra, Australian Capital Territory.
[PhyloWiki](http://phylo.wikidot.com/nicholas-j-matzke)

He has also done some other strange and interesting things. See
[1](http://en.wikipedia.org/wiki/Nick_Matzke%7Cwikipedia) and
[1](http://en.wikipedia.org/wiki/Nick_Matzke) and
[2](http://www.google.com/search?hl=en&rlz=1B3GGGL_enUS239US239&q=evolution+matzke&btnG=Search%7Cgoogle).