Skip to content

A future update to hail will cause issues installing gnomad_methods on dataproc #796

@chrisvittal

Description

@chrisvittal

I've updated the versions of many packages we install on dataproc, including updating notebook to version 7.4.4. Right now, gnomad pins ga4gh.vrs to version 0.8.4 which is almost two years old, and depends on jsonschema<4 whereas hail's dependencies now depend on jsonschema>=4.18.

ERROR: Cannot install ga4gh-vrs[extras]==0.8.4, ga4gh.vrs, jupyterlab-server==2.27.3 and notebook because these package versions have conflicting dependencies.

The conflict is caused by:
    ga4gh-vrs 0.8.4 depends on jsonschema<4
    ga4gh-vrs[extras] 0.8.4 depends on jsonschema<4
    jupyterlab-server 2.27.3 depends on jsonschema>=4.18.0
    ga4gh-vrs 0.8.4 depends on jsonschema<4
    ga4gh-vrs[extras] 0.8.4 depends on jsonschema<4
    jupyterlab-server 2.27.2 depends on jsonschema>=4.18.0
    ga4gh-vrs 0.8.4 depends on jsonschema<4
    ga4gh-vrs[extras] 0.8.4 depends on jsonschema<4
    jupyterlab-server 2.27.1 depends on jsonschema>=4.18.0

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions