cmu-delphi · krivard · Jan 13, 2023 · Jan 13, 2023 · Jan 13, 2023
diff --git a/.github/workflows/python-ci.yml b/.github/workflows/python-ci.yml
@@ -16,7 +16,7 @@ jobs:
     if: github.event.pull_request.draft == false
     strategy:
       matrix:
-        packages: [_delphi_utils_python, changehc, claims_hosp, combo_cases_and_deaths, doctor_visits, dsew_community_profile, google_symptoms, hhs_hosp, hhs_facilities, jhu, nchs_mortality, nowcast, quidel, quidel_covidtest, safegraph_patterns, sir_complainsalot, usafacts]
+        packages: [_delphi_utils_python, changehc, claims_hosp, combo_cases_and_deaths, doctor_visits, dsew_community_profile, google_symptoms, hhs_hosp, hhs_facilities, jhu, nchs_mortality, nowcast, quidel, quidel_covidtest, safegraph_patterns, sir_complainsalot]
     defaults:
       run:
         working-directory: ${{ matrix.packages }}

diff --git a/Jenkinsfile b/Jenkinsfile
@@ -9,7 +9,8 @@
    - Keep in sync with '.github/workflows/python-ci.yml'.
    - TODO: #527 Get this list automatically from python-ci.yml at runtime.
  */
-def indicator_list = ["backfill_corrections", "changehc", "claims_hosp", "google_symptoms", "hhs_hosp", "jhu", "nchs_mortality", "quidel", "quidel_covidtest", "safegraph_patterns", "sir_complainsalot", "usafacts", "dsew_community_profile", "doctor_visits"]
+
+def indicator_list = ["backfill_corrections", "changehc", "claims_hosp", "google_symptoms", "hhs_hosp", "jhu", "nchs_mortality", "quidel", "quidel_covidtest", "safegraph_patterns", "sir_complainsalot", "dsew_community_profile", "doctor_visits"]
 def build_package_main = [:]
 def build_package_prod = [:]
 def deploy_staging = [:]

diff --git a/_delphi_utils_python/delphi_utils/validator/params.json.template b/_delphi_utils_python/delphi_utils/validator/params.json.template
@@ -1,7 +1,7 @@
 {
   "validation": {
     "global": {
-      "data_source": "usa-facts",
+      "data_source": "jhu-csse",
       "end_date": "2020-09-08",
       "span_length": 3,
       "suppressed_errors": [

diff --git a/ansible/templates/sir_complainsalot-params-prod.json.j2 b/ansible/templates/sir_complainsalot-params-prod.json.j2
@@ -28,11 +28,6 @@
         "sum_anosmia_ageusia_smoothed_search"
       ]
     },
-    "usa-facts": {
-      "max_age": 5,
-      "maintainers": ["U01AP8GSWG3","U01069KCRS7"],
-      "retired-signals": ["confirmed_7dav_cumulative_num", "confirmed_7dav_cumulative_prop", "deaths_7dav_cumulative_num", "deaths_7dav_cumulative_prop"]
-    },
     "jhu-csse": {
       "max_age": 2,
       "maintainers": ["U01AP8GSWG3","U01069KCRS7"],

diff --git a/ansible/templates/usafacts-params-prod.json.j2 b/ansible/templates/usafacts-params-prod.json.j2
diff --git a/jenkins/usafacts-jenkins-build.sh b/jenkins/usafacts-jenkins-build.sh
diff --git a/jenkins/usafacts-jenkins-deploy.sh b/jenkins/usafacts-jenkins-deploy.sh
diff --git a/jenkins/usafacts-jenkins-package.sh b/jenkins/usafacts-jenkins-package.sh
diff --git a/jenkins/usafacts-jenkins-test.sh b/jenkins/usafacts-jenkins-test.sh
diff --git a/sir_complainsalot/params.json.template b/sir_complainsalot/params.json.template
@@ -28,11 +28,6 @@
         "sum_anosmia_ageusia_smoothed_search"
       ]
     },
-    "usa-facts": {
-      "max_age": 5,
-      "maintainers": ["U01AP8GSWG3","U01069KCRS7"],
-      "retired-signals": ["confirmed_7dav_cumulative_num", "confirmed_7dav_cumulative_prop", "deaths_7dav_cumulative_num", "deaths_7dav_cumulative_prop"]
-    },
     "jhu-csse": {
       "max_age": 2,
       "maintainers": ["U01AP8GSWG3","U01069KCRS7"],

diff --git a/testing_utils/indicator_validation.template.ipynb b/testing_utils/indicator_validation.template.ipynb
diff --git a/usafacts/.gitignore b/usafacts/.gitignore
diff --git a/usafacts/.pylintrc b/usafacts/.pylintrc
diff --git a/usafacts/DETAILS.md b/usafacts/DETAILS.md
diff --git a/usafacts/Makefile b/usafacts/Makefile
diff --git a/usafacts/README.md b/usafacts/README.md
diff --git a/usafacts/REVIEW.md b/usafacts/REVIEW.md
diff --git a/usafacts/cache/.gitignore b/usafacts/cache/.gitignore
diff --git a/usafacts/delphi_usafacts/__init__.py b/usafacts/delphi_usafacts/__init__.py
diff --git a/usafacts/delphi_usafacts/__main__.py b/usafacts/delphi_usafacts/__main__.py
diff --git a/usafacts/delphi_usafacts/geo.py b/usafacts/delphi_usafacts/geo.py
diff --git a/usafacts/delphi_usafacts/pull.py b/usafacts/delphi_usafacts/pull.py
diff --git a/usafacts/delphi_usafacts/run.py b/usafacts/delphi_usafacts/run.py
diff --git a/usafacts/input-cache/.gitignore b/usafacts/input-cache/.gitignore
diff --git a/usafacts/params.json.template b/usafacts/params.json.template
diff --git a/usafacts/receiving/.gitignore b/usafacts/receiving/.gitignore
diff --git a/usafacts/setup.py b/usafacts/setup.py
diff --git a/usafacts/tests/receiving/.gitignore b/usafacts/tests/receiving/.gitignore
diff --git a/usafacts/tests/test_data/bad_confirmed_extra_cols.csv b/usafacts/tests/test_data/bad_confirmed_extra_cols.csv
diff --git a/usafacts/tests/test_data/bad_confirmed_missing_cols.csv b/usafacts/tests/test_data/bad_confirmed_missing_cols.csv
diff --git a/usafacts/tests/test_data/bad_confirmed_missing_days.csv b/usafacts/tests/test_data/bad_confirmed_missing_days.csv
diff --git a/usafacts/tests/test_data/small_confirmed.csv b/usafacts/tests/test_data/small_confirmed.csv
diff --git a/usafacts/tests/test_data/small_deaths.csv b/usafacts/tests/test_data/small_deaths.csv
diff --git a/usafacts/tests/test_data/small_deaths_pull.csv b/usafacts/tests/test_data/small_deaths_pull.csv
diff --git a/usafacts/tests/test_geo.py b/usafacts/tests/test_geo.py
diff --git a/usafacts/tests/test_pull.py b/usafacts/tests/test_pull.py
diff --git a/usafacts/tests/test_run.py b/usafacts/tests/test_run.py