Intermittent invalid memory address panic #13
Description
When deleting a node, the current isolation and replenish approach can immediately reconnect the isolated node because of its presence in other neighbors. But since it will not exist in the layer it was just deleted in, when adding or searching uses it as a elevator node, the following panic can occur. It is intermittent, but it happens every few runs.
panic: runtime error: invalid memory address or nil pointer dereference
[signal SIGSEGV: segmentation violation code=0x1 addr=0x10 pc=0x4db2b8]
goroutine 1 [running]:
github.com/coder/hnsw.(*layerNode[...]).search(0x55d540, 0x10, 0x14, {0xc000094600, 0x180, 0x180}, 0x534250)
/home/kyro/go/hnsw/graph.go:95 +0xf8
github.com/coder/hnsw.(*Graph[...]).Add(0x55e140, {0xc00012fef8, 0x1?, 0x1?})
/home/kyro/go/hnsw/graph.go:379 +0x6fb
main.testThing4()
...
exit status 2
This can be reproduced with the following script:
func main() {
hnswIndex := hnsw.NewGraph[string]()
type Embedding struct {
Vector []float32
Key string
}
values := []string{
"league1",
"league2",
"league3",
"league4",
"league5",
}
embeddings := [][]float32{
{-0.06066462, -0.016593335, -0.06921883, -0.0031063927, 0.01295224, -0.05953957, 0.09257405, -0.015074318, 0.010378634, -0.040498164, -0.045169048, -0.1078947, 0.016362434, 0.0051204055, 0.0062680463, 0.039795123, 0.016094167, -0.026095677, -0.023529993, -0.058111046, -0.05008956, -0.0281288, -0.07738938, 0.041443884, 0.02608402, -0.06317096, -0.053937677, 0.091533005, -0.10721061, -0.118811846, -0.028782563, 0.015608745, 0.059640326, 0.085047744, -0.015528729, -0.07628037, 0.04286256, 0.011255903, -0.056525785, 0.015863547, 0.008512002, -0.03167662, -0.055044442, -0.03359072, 0.0022187852, 0.01805071, 0.009225973, 0.05815648, -0.021735167, 0.09730368, 0.028804936, -0.043995634, 0.0021966703, -0.010733915, 0.04422886, 0.08616356, -0.071209095, 0.12572439, -0.020023968, 0.0012484515, -0.018909143, -0.027199727, -0.022185024, -0.018339554, -0.0026171843, -0.061585587, 0.018290693, -0.05449115, 0.008678306, -0.09081189, -0.06649016, -0.008923123, -0.038791455, -0.045550145, 0.03851041, 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}
for i, v := range values {
hnswIndex.Add(
hnsw.MakeNode(v, embeddings[i]),
)
}
v := "team2"
embedding := []float32{-0.06539415, -0.027823348, -0.03772864, -0.0034696902, 0.02072557, -0.06353158, 0.06481954, 0.021066925, 0.034757897, -0.021056596, 0.02323698, -0.04168465, 0.039005302, 0.014945698, 0.046930876, -0.03631426, 0.020578146, -0.026008511, 0.018045751, -0.08124169, -0.029925084, -0.07926792, -0.012736791, 0.00046877912, -0.042684596, -0.0006858136, -0.04320687, 0.061430503, -0.029030377, -0.13425644, -0.048344254, 0.02008327, 0.0024301603, 0.03516202, -0.031802148, -0.057144605, 0.08277547, 0.012653222, -0.08646312, 0.0055081886, -0.032108046, 3.504057e-06, -0.017204423, -0.011897656, 0.007261158, 0.06520825, 0.052444275, -0.004867788, 0.02580753, 0.049752336, -0.037046332, -0.055589765, 0.020784043, 0.00323603, 0.086183526, 0.06471663, -0.018913414, 0.07078497, 0.06177164, -0.033469856, 0.07676252, -0.022798657, -0.036071047, 0.015858432, -0.00085256103, -0.022806184, 0.00426063, 0.061575044, -0.034615908, -0.019364303, -0.055281285, 0.020373495, 0.0139790615, -0.04956796, 0.055388197, 0.03830585, 0.014378984, -0.053220753, 0.06818961, -0.036032766, 0.00079386076, -0.08041608, -0.020435808, 0.031856425, -0.08451293, -0.02554263, -0.04488896, -0.01947902, -0.033607356, 0.020628547, -0.041263357, 0.06548635, 0.14182298, 0.03967032, -0.074106164, 0.11442804, 0.05088283, -0.02066303, -0.0036681255, 0.16322407, -0.033526644, 0.0048042927, -0.051046602, -0.04862657, 0.06770692, -0.0031443744, 0.00648013, -0.011852278, 0.052320067, 0.052596852, 0.034182813, 0.028827252, -0.105260976, -0.013367333, 0.011185136, 0.060139276, 0.0135792, 0.074791625, 0.006100156, -0.008854431, 0.117002316, -0.038868234, -0.015171263, -0.04016981, 0.012949333, 0.005132895, 0.0201803, -2.7964412e-33, 0.008364411, -0.03277438, -0.023037415, 0.14207405, 0.04170713, -0.0431936, 0.006498775, -0.016029391, -0.1036123, -0.025966037, -0.08629779, -0.034304824, -0.009282443, -0.0043351604, 0.11084803, -0.036759708, 0.03888378, 0.029575855, 0.0005282945, 0.04025239, -0.0055963397, 0.061217826, 0.025656324, -0.008929663, 0.022981387, 0.042775005, -0.00014877807, -0.10444285, 0.05733841, 0.046557356, 0.038108855, -0.024584752, -0.0703485, 0.04742332, -0.012934169, -0.058334395, 0.024492841, -0.078108676, -0.008144509, 0.01969772, 0.057585385, 0.02489977, -0.05443282, 0.004936235, 0.032260317, -0.09358775, 0.038644306, -0.010339306, 0.06076401, -0.025123676, -0.01641802, -0.033290368, -0.04739849, 0.040660802, 0.023261247, -0.017698796, 0.04727395, 0.025131103, 0.025689395, -0.020769142, -0.011038638, 0.07451113, -0.019676479, -0.0023825055, 0.015479014, 0.013760782, 0.032995477, 0.009689447, 0.05239447, -0.040011242, -0.019127503, -0.059735127, 0.12841143, 0.0563773, 0.06409659, -0.020256147, 0.026851138, 0.048878882, -0.05722435, -0.0091199605, -0.13425924, -0.055610072, -0.05782693, 0.031428583, -0.0046226615, -0.0074148523, -0.05567609, -0.066519774, -0.048481025, 0.024995461, -0.09150961, 0.011331935, 1.1623161e-05, 0.05525435, -0.03792291, 2.0493706e-33, -0.038111757, -0.018077698, 0.015529806, 0.009462576, 0.07762364, -0.03939637, 0.027680619, -0.022455063, 0.006816235, 0.12573285, 0.017800007, -0.023381734, 0.027586997, 0.014118107, 0.03447198, 0.008687322, 0.04727356, -0.059198312, 0.0049015046, -0.022559691, -0.013500169, -0.013996227, 0.02032922, 0.034670256, 0.033001874, 0.033124793, 0.058302622, -0.017138658, 0.019504042, -0.020354906, 0.049145263, -0.025868539, 0.000424131, -0.024563195, 0.019439708, 0.037600413, -0.04174641, -0.017591272, -0.08337392, -0.025024956, 0.05198678, 0.009201722, -0.06614077, 0.10022683, -0.026869692, 0.019403214, 0.08267063, -0.0033807927, -0.011699827, 0.05243912, -0.012006798, 0.014784766, -0.033166233, 0.0271092, -0.061562467, 0.0014351215, -0.016452227, -0.02079969, -0.014602032, 0.047189884, 0.058808647, -0.03218105, -0.065427504, 0.09743567, -0.016701346, 0.0035035727, -0.028271442, 0.06104911, -0.029847845, 0.07432523, -0.04259687, 0.016118454, -0.014274684, 0.029166788, -0.05295592, -0.018262062, -0.15720609, 0.017575482, 0.025650468, -0.04574113, -0.065672845, 0.019229945, 0.005863023, 0.07941322, 0.010290119, -0.015907124, 0.06424126, 0.17836536, -0.018588815, -0.00966833, 0.017006455, -0.020737901, 0.052651074, 0.000497559, -0.0006408372, -1.3099426e-08, 0.005509318, 0.058749426, 0.09273423, 0.010792593, -0.025817657, 0.0035863612, -0.13114814, 0.07667697, 0.066355206, 0.056829575, -0.056884434, 0.016867843, 0.07604681, -0.049235377, 0.047188304, 0.114014216, -0.045292728, 0.0077992463, -0.04295934, -0.06448627, -0.022342088, -0.062146503, -0.08052888, -0.034057647, -0.041514482, 0.00051967404, -0.12623425, 0.07065586, -0.033255573, -0.018723391, 0.0048976913, 0.06672058, -0.053188536, -0.0017316559, 0.035458647, -0.05437149, -0.023423677, -0.07326949, -0.021816991, -0.0031228538, 0.06370666, 0.056458052, 0.0018476143, 0.018963102, -0.0072867335, -0.002967492, 0.050247524, -0.10774854, -0.0874513, -0.16771844, -0.020401588, 0.017097343, -0.07341778, 0.081427656, 0.013880905, 0.10307784, -0.041780367, 0.027091106, -0.008628895, 0.009967529, 0.110573046, 0.078561574, -0.052204475, -0.03912844}
for i := 0; i < 10; i++ {
_, found := hnswIndex.Lookup(v)
if found {
hnswIndex.Delete(v)
} else {
hnswIndex.Add(
hnsw.MakeNode(v, embedding),
)
}
}
}