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Update: Now the section 18 (reordered from section 19: custom types) uses containerized tool.
Once the section 19 (reordered from section 20: software requirements) uses smaller tool, we can close this issue.
These are lessons 19 & 20
A smaller tool can have a small Docker container and would be more easily used & tested
For "Custom Types", we could use https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl/blob/master/tools/biom-convert.cwl
For "Specifying Software Requirements" we could use https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl/blob/master/tools/nhmmer.cwl
Thanks to @tom-tan for reporting this: #61 (comment)
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