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Docker Clarity #313

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Merged
merged 6 commits into from
Oct 19, 2022
Merged

Docker Clarity #313

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21f9150
Typo fix
smyja Oct 12, 2022
ad0ae1c
docker clarity
smyja Oct 18, 2022
acced35
Merge branch 'common-workflow-language:main' into dock
smyja Oct 18, 2022
5afbfd3
typo fix
smyja Oct 18, 2022
f4b4896
Merge branch 'main' into dock
tetron Oct 19, 2022
c8e4770
Merge branch 'main' into dock
tetron Oct 19, 2022
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4 changes: 2 additions & 2 deletions src/faq.md
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Expand Up @@ -246,7 +246,7 @@ inputs:
<a name="enuminputs"></a>
## Enum Inputs ⚜️

For command-line flags that require a specific input as the argument, an enum type can be declared in CWL. **Specifying null here is known as long form style. It does the same thing as the question mark on the other inputs.**
For command line flags that require a specific input as the argument an enum type can be declared in CWL. **Specifying null here is known as long form style. It does the same thing as the question mark on the other inputs.**

```yaml
Format:
Expand All @@ -266,7 +266,7 @@ Format:
<a name="recordinputs"></a>
## Record Inputs 📀

For command-line flags that are either **mutually exclusive** or **dependent**, a special record type can be defined. You can also specify null here to create optional inputs.
For commandline flags that are either **mutually exclusive** or **dependent** a special record type can be defined. You can also specify null here to create optional inputs.

```yaml
#Using record inputs to create mutually exclusive inputs
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4 changes: 2 additions & 2 deletions src/topics/using-containers.md
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Expand Up @@ -41,15 +41,15 @@ hints:
dockerPull: node:slim
```

`baseCommand: node` tells CWL that we will be running this command in a container. We
`baseCommand: node` tells CWL that we will be running this command using the Node Js runtime that is meant for Javascript files. We
then need to specify some `hints` for how to find the container we want. In this case we list
just our requirements for the docker container in `DockerRequirements`. The `dockerPull:`
parameter takes the same value that you would pass to a `docker pull` command. That is,
the name of the container image (you can even specify the tag, which is good idea for
best practices when using containers for reproducible research). In this case we have
used a container called `node:slim`.

Provide a "hello.js" and invoke `cwltool` providing the tool description and the
Create a Javascript file named "hello.js" and invoke `cwltool` providing the tool description and the
input object on the command line:

```{literalinclude} /_includes/cwl/using-containers/hello.js
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