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DataJoint

Open-source tools for computational data pipelines.

Welcome to DataJoint!

DataJoint for Python is an open-source framework for scientific data pipelines based on the relational data model. DataJoint prescribes a consistent method for organizing, populating, computing, and querying data.

In this GitHub Organization, you will find the source code for DataJoint, as well as tutorials and example pipelines.

Data Pipeline Example

pipeline

Yatsenko et al., bioRxiv 2021

Getting Started

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  1. datajoint-python datajoint-python Public

    Relational data pipelines for the science lab

    Python 181 89

  2. datajoint-tutorials datajoint-tutorials Public

    Getting started materials for DataJoint - with Calcium Imaging, Electrophysiology, Machine Learning examples

    Jupyter Notebook 12 141

  3. element-array-ephys element-array-ephys Public

    DataJoint Element for Neuropixels analysis with Kilosort

    Jupyter Notebook 6 38

  4. element-calcium-imaging element-calcium-imaging Public

    DataJoint Element for multi-photon calcium imaging analysis with CaImAn, Suite2p, and EXTRACT

    Jupyter Notebook 13 49

Repositories

Showing 10 of 92 repositories
  • element-array-ephys Public

    DataJoint Element for Neuropixels analysis with Kilosort

    datajoint/element-array-ephys’s past year of commit activity
    Jupyter Notebook 6 MIT 38 26 (2 issues need help) 0 Updated Jul 8, 2025
  • datajoint-python Public

    Relational data pipelines for the science lab

    datajoint/datajoint-python’s past year of commit activity
    Python 181 LGPL-2.1 89 37 3 Updated Jul 3, 2025
  • nginx-docker Public
    datajoint/nginx-docker’s past year of commit activity
    Python 1 5 1 1 Updated Jul 1, 2025
  • element-moseq Public

    DataJoint Element for Motion Sequencing with Keypoint-MoSeq

    datajoint/element-moseq’s past year of commit activity
    Jupyter Notebook 5 MIT 7 0 0 Updated Jun 30, 2025
  • element-optogenetics Public

    DataJoint Element for optogenetic experiments

    datajoint/element-optogenetics’s past year of commit activity
    Jupyter Notebook 0 MIT 8 0 0 Updated Jun 18, 2025
  • datajoint-specs Public

    DataJoint Specifications

    datajoint/datajoint-specs’s past year of commit activity
    1 CC-BY-SA-4.0 2 0 0 Updated May 23, 2025
  • element-zstack Public

    DataJoint Element for volumetric data analysis using Cellpose

    datajoint/element-zstack’s past year of commit activity
    Python 0 MIT 8 1 0 Updated May 20, 2025
  • element-session Public

    DataJoint Element for session management

    datajoint/element-session’s past year of commit activity
    Python 1 MIT 18 1 0 Updated May 20, 2025
  • element-miniscope Public

    DataJoint Element for miniscope calcium imaging analysis with CaImAn

    datajoint/element-miniscope’s past year of commit activity
    Jupyter Notebook 2 MIT 14 2 2 Updated May 20, 2025
  • element-lab Public

    DataJoint Element for lab management

    datajoint/element-lab’s past year of commit activity
    Python 1 MIT 16 2 0 Updated May 20, 2025

Top languages

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