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@joachimwolff joachimwolff commented Jun 27, 2019

  • Using now indptr, indices and data to pass to c++
  • using int64_t to be able to compute even the largest Hi-C datasets

Leily Rabbani and others added 16 commits March 15, 2019 11:38
* Fixed the bug with omp

* fixed rescaling

* typo

* removed a print
* Develop (#12)

* print the system platform

* print out the platform

* changed darwin to Darwin

* remove extra_link_args for mac

* Test the robustness of result (#11)

* Fixed the bug with omp

* fixed rescaling

* typo

* removed a print

* Removed a print from setup.py

* version

* Replaced the copy of sparse matrix with a reference to its dimension and its non zero values

* added test prints

* Adding parsing with indpt, indices and data from csr_matrix (#13)

* Ref to matrix (#14)

* Adding parsing with indpt, indices and data from csr_matrix

* Write directly to matrix. added openmp for that, but looks like there is no benefit from openmp

* Removing openmp and direct writing to matrix, performance was too bad. Adding clean to triplets to free memory as early as possible

* omp

* added noconvert()

* removed a commented line

* removing commented lines

* version
@joachimwolff joachimwolff merged commit 572c865 into master Jun 28, 2019
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2 participants