Replace validate_stubs scripts with stubtest

.github/workflows/test.yml

@@ -44,6 +44,9 @@ jobs:
       - name: Run mypy tests
         run: python -m mypy . --python-version=${{ matrix.python-version }}
 
+      - name: Run stubtest
+        run: python tests/run_stubtest.py
+
   hygiene:
     runs-on: ubuntu-latest
     timeout-minutes: 10

pyproject.toml

@@ -14,20 +14,21 @@ tests = [
     "mypy ==1.15.*",
     "pyright",
 
-    # Typed libraries and stubs
+    # External type stubs and optional dependencies
+    "PyOpenGL",
     "matplotlib >=3.8",
     "pandas-stubs",
     "pytest",
     "scipy-stubs",
     "typing_extensions",
 
-    # Untyped libraries and partial stubs. Used to prevent "reportMissingImports" and get inferred typing
-    "joblib",
+    # The libraries we're stubbing.
+    # Needed for stubtest and downloads their dependencies to get known import symbols
     "networkx",
-    "PyOpenGL",
+    "scikit-image",
     "scikit-learn",
     "sympy",
-    "traitlets",
+    "vispy",
 ]
 dev = [{ include-group = "hygiene" }, { include-group = "tests" }]
 
@@ -136,7 +137,6 @@ reportSelfClsParameterName = false
 reportUnsupportedDunderAll = "error"
 
 [tool.mypy]
-python_version = "3.9" # Target oldest supported Python version
 strict = true
 check_untyped_defs = true # Strict check on all defs
 show_column_numbers = true
@@ -161,6 +161,13 @@ disable_error_code = [
     "assignment", # 744 errors in 155 files
 ]
 
+[[tool.mypy.overrides]]
+# follow_untyped_imports = true will cause stubtest to run mypy on the source
+# So disable it for partial stubs
+module = ["sympy.*"]
+follow_untyped_imports = false
+disable_error_code = ["import-untyped", "misc"]
+
 [[tool.mypy.overrides]]
 # These modules are to be removed soon, not worth solving many issues
 module = ["matplotlib.*", "networkx.*"]
@@ -169,7 +176,7 @@ disable_error_code = [
     "misc",
 ]
 [[tool.mypy.overrides]]
-module = ["sympy.*", "skimage.*", "sklearn.*"]
+module = ["skimage.*", "sklearn.*"]
 # TODO: Too many untyped decorators still left
 # https://github.com/python/mypy/issues/19148
 disable_error_code = ["misc"]

stubs/matplotlib/_mathtext.pyi

@@ -10,7 +10,7 @@ from .mathtext import MathtextBackend
 # tkinter.tix was removed from Python 3.13
 # Recent matplotlib versions define HList in this module
 if sys.version_info >= (3, 13):
-    HList: Incomplete
+    HList = Incomplete
 else:
     from tkinter.tix import HList
 
@@ -150,14 +150,23 @@ class List(Box):
 
 class Hlist(List):
     def __init__(
-        self, elements, w: float = 0, m: Literal["exactly", "additional"] = "additional", do_kern: bool = True
+        self,
+        elements,
+        w: float = 0,
+        m: Literal["exactly", "additional"] = "additional",
+        do_kern: bool = True,
     ) -> None: ...
     def kern(self) -> None: ...
     def hpack(self, w: float = 0, m: Literal["exactly", "additional"] = "additional") -> None: ...
 
 class Vlist(List):
     def __init__(self, elements, h=0, m=...) -> None: ...
-    def vpack(self, h: float = ..., m: Literal["exactly", "additional"] = "additional", l: float = ...) -> None: ...
+    def vpack(
+        self,
+        h: float = ...,
+        m: Literal["exactly", "additional"] = "additional",
+        l: float = ...,
+    ) -> None: ...
 
 class Rule(Box):
     def __init__(self, width: float, height: float, depth: float, state) -> None: ...

stubs/matplotlib/backends/backend_ps.pyi

@@ -5,7 +5,6 @@ from matplotlib.backend_bases import FigureCanvasBase, FigureManagerBase, Graphi
 from matplotlib.font_manager import FontProperties
 from matplotlib.text import Text
 from matplotlib.transforms import Affine2DBase, Transform
-from traitlets import Int
 
 from . import _backend_pdf_ps
 
@@ -84,7 +83,7 @@ class _Orientation(Enum):
     def swap_if_landscape(self, shape: tuple[float, int]) -> tuple[float, int]: ...
 
 class FigureCanvasPS(FigureCanvasBase):
-    fixed_dpi: Int = ...
+    fixed_dpi: int = ...
     filetypes: dict[str, str] = ...
     def get_default_filetype(self) -> str: ...
     def print_ps(self, outfile, *args, metadata=None, papertype=None, orientation="portrait", **kwargs) -> None: ...

stubs/networkx/generators/atlas.pyi

@@ -1,56 +1,12 @@
-import gzip
-import os
-import os.path
-from itertools import islice
+from importlib.abc import Traversable
+from typing import Final
 
 from numpy.typing import ArrayLike
 
-from ..classes.graph import Graph
-
 __all__ = ["graph_atlas", "graph_atlas_g"]
 
-#: The total number of graphs in the atlas.
-#:
-#: The graphs are labeled starting from 0 and extending to (but not
-#: including) this number.
-NUM_GRAPHS: int = ...
-
-#: The absolute path representing the directory containing this file.
-THIS_DIR = ...
-
-#: The path to the data file containing the graph edge lists.
-#:
-#: This is the absolute path of the gzipped text file containing the
-#: edge list for each graph in the atlas. The file contains one entry
-#: per graph in the atlas, in sequential order, starting from graph
-#: number 0 and extending through graph number 1252 (see
-#: :data:`NUM_GRAPHS`). Each entry looks like
-#:
-#: .. sourcecode:: text
-#:
-#:    GRAPH 6
-#:    NODES 3
-#:    0 1
-#:    0 2
-#:
-#: where the first two lines are the graph's index in the atlas and the
-#: number of nodes in the graph, and the remaining lines are the edge
-#: list.
-#:
-#: This file was generated from a Python list of graphs via code like
-#: the following::
-#:
-#:     import gzip
-#:     from networkx.generators.atlas import graph_atlas_g
-#:     from networkx.readwrite.edgelist import write_edgelist
-#:
-#:     with gzip.open('atlas.dat.gz', 'wb') as f:
-#:         for i, G in enumerate(graph_atlas_g()):
-#:             f.write(bytes(f'GRAPH {i}\n', encoding='utf-8'))
-#:             f.write(bytes(f'NODES {len(G:Graph)}\n', encoding='utf-8'))
-#:             write_edgelist(G:Graph, f, data=False)
-#:
-ATLAS_FILE = ...
+NUM_GRAPHS: Final = 1253
+ATLAS_FILE: Traversable
 
 def graph_atlas(i: int) -> ArrayLike: ...
 def graph_atlas_g() -> ArrayLike: ...