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Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-droplet detection

nf-co.re/scrnaseq

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Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-droplet detection

nf-co.re/scrnaseq

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workflow rna-seq pipeline nextflow single-cell kallisto 10x-genomics 10xgenomics nf-core bustools alevin cellranger star-solo

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MIT license

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Releases 17

4.0.0 Latest
Mar 11, 2025
+ 16 releases

Contributors 43

+ 29 contributors

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