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select doesn't work on stdout/stderr in Windows. We'll need to move to asyncio, I believe.
select
stdout
stderr
asyncio
Originally posted by @axiezai in #2509 (comment)
I just pointed the dcm2niix example to an empty directory, with the updated installation you suggested:
{'commit_hash': '0dbcedda8', 'commit_source': 'installation', 'networkx_version': '2.5', 'nibabel_version': '3.2.0', 'nipype_version': '1.6.0-dev', 'numpy_version': '1.19.4', 'pkg_path': 'C:\\Users\\Xihe\\anaconda3\\envs\\nipype_test\\lib\\site-packages\\nipype', 'scipy_version': '1.5.4', 'sys_executable': 'C:\\Users\\Xihe\\anaconda3\\envs\\nipype_test\\python.exe', 'sys_platform': 'win32', 'sys_version': '3.8.5 (default, Sep 3 2020, 21:29:08) [MSC v.1916 64 bit ' '(AMD64)]', 'traits_version': '6.1.1'}
Here's the code I used:
from nipype.interfaces.dcm2nii import Dcm2niix converter = Dcm2niix() converter.inputs.source_dir = 'C:/Users/Xihe/Documents/nipype_testing/' converter.inputs.compression = 5 converter.inputs.output_dir = 'C:/Users/Xihe/Documents/nipype_testing/' converter.run()
The directory has no dicom images so I expect the following msg:
Error: Unable to find any DICOM images in /mnt/c/Users/Xihe/Downloads (or subfolders 5 deep) Return code: 2
Which is what happens on my ubuntu subsystem on the same windows machine I'm testing on.
But in Windows Anaconda installation I am now getting:
--------------------------------------------------------------------------- OSError Traceback (most recent call last) <ipython-input-8-e1d471e9c2ab> in <module> ----> 1 converter.run() ~\anaconda3\envs\nipype_test\lib\site-packages\nipype\interfaces\base\core.py in run(self, cwd, ignore_exception, **inputs) 432 try: 433 runtime = self._pre_run_hook(runtime) --> 434 runtime = self._run_interface(runtime) 435 runtime = self._post_run_hook(runtime) 436 outputs = self.aggregate_outputs(runtime) ~\anaconda3\envs\nipype_test\lib\site-packages\nipype\interfaces\dcm2nii.py in _run_interface(self, runtime) 442 def _run_interface(self, runtime): 443 # may use return code 1 despite conversion --> 444 runtime = super(Dcm2niix, self)._run_interface( 445 runtime, correct_return_codes=(0, 1,) 446 ) ~\anaconda3\envs\nipype_test\lib\site-packages\nipype\interfaces\base\core.py in _run_interface(self, runtime, correct_return_codes) 825 else "<skipped>" 826 ) --> 827 runtime = run_command(runtime, output=self.terminal_output) 828 if runtime.returncode is None or runtime.returncode not in correct_return_codes: 829 self.raise_exception(runtime) ~\anaconda3\envs\nipype_test\lib\site-packages\nipype\utils\subprocess.py in run_command(runtime, output, timeout) 135 while proc.returncode is None: 136 proc.poll() --> 137 _process() 138 139 _process(drain=1) ~\anaconda3\envs\nipype_test\lib\site-packages\nipype\utils\subprocess.py in _process(drain) 122 def _process(drain=0): 123 try: --> 124 res = select.select(streams, [], [], timeout) 125 except select.error as e: 126 iflogger.info(e) OSError: [WinError 10038] An operation was attempted on something that is not a socket
Not sure if this is a separate issue or something weird going on with my old laptop
The text was updated successfully, but these errors were encountered:
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select
doesn't work onstdout
/stderr
in Windows. We'll need to move toasyncio
, I believe.Originally posted by @axiezai in #2509 (comment)
I just pointed the dcm2niix example to an empty directory, with the updated installation you suggested:
Here's the code I used:
The directory has no dicom images so I expect the following msg:
Which is what happens on my ubuntu subsystem on the same windows machine I'm testing on.
But in Windows Anaconda installation I am now getting:
Not sure if this is a separate issue or something weird going on with my old laptop
The text was updated successfully, but these errors were encountered: