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[ENH] add -dsort option to TProject #2623

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Merged
merged 3 commits into from
Jun 28, 2018
Merged

[ENH] add -dsort option to TProject #2623

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cb96c1e
add -dsort option to TProject
mattcieslak Jun 20, 2018
76203b2
modified to handle multiple dsort files
mattcieslak Jun 21, 2018
264f0e4
Use correct argstr for multiple dsorts
mattcieslak Jun 27, 2018
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8 changes: 8 additions & 0 deletions nipype/interfaces/afni/preprocess.py
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Original file line number Diff line number Diff line change
Expand Up @@ -2492,6 +2492,14 @@ class TProjectInputSpec(AFNICommandInputSpec):
even if -ort contains constant terms, as all means are
removed.""",
argstr="-polort %d")
dsort = File(
desc="""Remove the 3D+time time series in dataset fset.
++ That is, 'fset' contains a different nuisance time
series for each voxel (e.g., from AnatICOR).
++ Multiple -dsort options are allowed.""",
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Since multiple -dsort options are allowed, let's allow multiple files.

Here's an example, but you'll want to use InputMultiObject instead of InputMultiPath

nipype/nipype/interfaces/dcm2nii.py

Lines 342 to 344 in 704b97d

series_numbers = InputMultiPath(
traits.Str(),
argstr='-n %s...',

argstr='-dsort %s',
exists=True,
copyfile=False)
bandpass = traits.Tuple(
traits.Float, traits.Float,
desc="""Remove all frequencies EXCEPT those in the range""",
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