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    12 repositories

    • cgat-core

      Public
      Core functionality of the CGAT code
      Python
      •
      MIT License
      •13•33•2•2•Updated Aug 3, 2025Aug 3, 2025

    • cgat-flow

      Public
      cgat-flow repository
      Jupyter Notebook
      •
      MIT License
      •10•16•18•2•Updated Jul 8, 2025Jul 8, 2025

    • cgat-apps

      Public
      cgat-apps repository
      Python
      •
      Other
      •15•34•10•1•Updated Apr 9, 2025Apr 9, 2025

    • cgat-daisy

      Public
      a benchmarking system based on the CGATCore
      Python
      •
      Other
      •4•1•1•3•Updated Nov 2, 2023Nov 2, 2023

    • bioconda-recipes

      Public
      Conda recipes for the bioconda channel.
      Shell
      •3.6k•0•0•0•Updated Nov 25, 2021Nov 25, 2021

    • ruffus

      Public
      CGAT-ruffus is a lightweight python module for running computational pipelines
      Python
      •
      MIT License
      •34•174•48•1•Updated Jul 12, 2021Jul 12, 2021

    • conda-deps

      Public
      Generate conda environment files from Python and R source code
      Python
      •
      MIT License
      •1•5•0•0•Updated Feb 19, 2020Feb 19, 2020

    • cgat-tests

      Public
      Configuration files for tests
      Shell
      •
      Other
      •0•0•1•0•Updated Jan 21, 2020Jan 21, 2020

    • cgat-showcase

      Public
      Showcase example of how to build workflows using CGAT-core
      Python
      •
      Other
      •0•0•0•0•Updated Mar 11, 2019Mar 11, 2019

    • cgat-gwas

      Public
      GWAS bits and pieces
      Python
      •
      MIT License
      •0•1•0•0•Updated Sep 21, 2018Sep 21, 2018

    • cgat-singlecell

      Public
      Tools for working with single cell data sets.
      Python
      •
      Other
      •1•0•1•0•Updated Sep 20, 2018Sep 20, 2018

    • staged-recipes

      Public
      A place to submit conda recipes before they become fully fledged conda-forge feedstocks
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •5.4k•0•0•0•Updated Sep 7, 2018Sep 7, 2018