Repositories list

• ome-resources-monitor

  Public
  BSD 2-Clause "Simplified" License

  •2•0•1•0•Updated Aug 5, 2025Aug 5, 2025

• omero-documentation

  Public
  Sphinx-based documentation for the Open Microscopy Environment

  documentationomeroome

  Python

  •

  BSD 2-Clause "Simplified" License

  •51•22•29•8•Updated Aug 5, 2025Aug 5, 2025

• upptime

  Public
  📈 Uptime monitor and status page for OME, powered by @upptime

  uptime-monitorstatus-pageupptime

  Markdown

  •

  MIT License

  •1•1•1•1•Updated Aug 5, 2025Aug 5, 2025

• napari-ome-zarr

  Public
  A napari plugin for zarr backed OME-NGFF images

  napari-pluginzarrngff+ 1python

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •24•33•27•8•Updated Aug 4, 2025Aug 4, 2025

• ome-zarr-py

  Public
  Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

  omezarrngff+ 1ome-zarr

  Python

  •

  Other

  •61•200•65•15•Updated Aug 4, 2025Aug 4, 2025

• omero-demo-cleanup

  Public
  A CLI plugin for managing the disk space on the OME demo server

  Python

  •

  GNU General Public License v2.0

  •4•2•1•2•Updated Aug 4, 2025Aug 4, 2025

• omero-cli-zarr

  Public
  omerozarrngff+ 1ome-zarr-converter

  Python

  •

  GNU General Public License v2.0

  •10•17•17•9•Updated Aug 4, 2025Aug 4, 2025

• ome_zarr_test_suite

  Public
  Test suite of reader and writer implementations

  Python

  •6•4•3•3•Updated Aug 4, 2025Aug 4, 2025

• bio-formats-documentation

  Public
  Bio-Formats documentation

  documentationbio-formats

  Java

  •

  BSD 2-Clause "Simplified" License

  •19•8•1•0•Updated Aug 4, 2025Aug 4, 2025

• bio-formats-examples

  Public
  Examples of usage of the Bio-Formats API

  apimavenexamples+ 2gradlebio-formats

  Java

  •

  Other

  •19•13•1•0•Updated Aug 4, 2025Aug 4, 2025

• bioformats

  Public
  Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.

  javametadataimage+ 7format-readerformat-converterwhole-slide-imagingwsilightsheetbio-formatslife-sciences-image

  Java

  •

  GNU General Public License v2.0

  •248•400•175•9•Updated Aug 4, 2025Aug 4, 2025

• ome-common-java

  Public
  Java library providing common functionality for all OME Java components

  Java

  •

  Other

  •20•2•0•0•Updated Jul 31, 2025Jul 31, 2025

• omero-web-apps-examples

  Public template
  Example Setup for Web Apps

  Python

  •4•1•2•4•Updated Jul 30, 2025Jul 30, 2025

• www.openmicroscopy.org

  Public
  OME main website

  jekyll-siteome

  HTML

  •

  Creative Commons Attribution 4.0 International

  •22•6•12•1•Updated Jul 29, 2025Jul 29, 2025

• openmicroscopy

  Public
  OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities, research establishments and industry in Europe and the USA, OME has over 20 active researchers with strong links to the microscopy community. Funded …

  pythonimagedatabase+ 3serveromerojava

  Java

  •

  GNU General Public License v2.0

  •102•212•22•6•Updated Jul 29, 2025Jul 29, 2025

• omero-figure

  Public
  An OMERO.web app for creating Figures from images in OMERO

  webappomero

  JavaScript

  •

  GNU Affero General Public License v3.0

  •33•17•73•10•Updated Jul 28, 2025Jul 28, 2025

• omero-python-superbuild

  Public
  OMERO build for Python server components

  pythonbuildomero+ 1meta-repo

  4•0•1•2•Updated Jul 28, 2025Jul 28, 2025

• omero-py

  Public
  Python project containing Ice remoting code for OMERO

  pythoncomponentlib+ 2omeroomero-py

  Python

  •

  GNU General Public License v2.0

  •35•24•55•10•Updated Jul 25, 2025Jul 25, 2025

• omero-zarr-pixel-buffer

  Public
  OMERO Zarr Pixel Buffer Implementation

  Java

  •

  GNU General Public License v2.0

  •9•0•0•3•Updated Jul 24, 2025Jul 24, 2025

• meeting-minutes

  Public
  Minutes from the weekly OME community meetings

  Creative Commons Attribution 4.0 International

  •6•0•1•0•Updated Jul 15, 2025Jul 15, 2025

• ome-ngff-tools

  Public
  Document available viewers and other tools for the OME-NGFF image format

  ngffome-zarr

  BSD 3-Clause "New" or "Revised" License

  •7•2•9•0•Updated Jul 15, 2025Jul 15, 2025

• omero_search_engine

  Public
  App which is used to search metadata (key-value pairs)

  Python

  •

  GNU General Public License v2.0

  •4•1•15•10•Updated Jul 7, 2025Jul 7, 2025

• omero-cli-transfer

  Public
  An OMERO CLI plugin for creating transfer packets between OMERO servers.

  omeroomero-serveromero-import

  Python

  •

  GNU General Public License v2.0

  •16•17•6•0•Updated Jul 2, 2025Jul 2, 2025

• schemas

  Public
  A repository containing the published OME schemas for www.openmicroscopy.org

  XSLT

  •

  Creative Commons Attribution 4.0 International

  •4•0•1•1•Updated Jul 2, 2025Jul 2, 2025

• omero-server-docker

  Public
  OMERO.server production docker image

  dockeromeopenmicroscopy+ 2omero-serveromero

  Shell

  •

  BSD 2-Clause "Simplified" License

  •28•15•10•7•Updated Jul 1, 2025Jul 1, 2025

• ome-poi

  Public
  OME fork of Apache Jakarta POI

  poi

  Java

  •

  Apache License 2.0

  •5•0•2•0•Updated Jul 1, 2025Jul 1, 2025

• ome-stubs

  Public
  Stubs for optional third-party components

  Java

  •

  Other

  •8•0•0•0•Updated Jul 1, 2025Jul 1, 2025

• ome-model-documentation

  Public
  Python

  •

  BSD 2-Clause "Simplified" License

  •3•0•1•0•Updated Jul 1, 2025Jul 1, 2025

• ome-model

  Public
  OME model (specification, code generator, implementation)

  imageschemadata-model+ 3specificationcode-generationome-model

  XSLT

  •

  Other

  •28•15•8•0•Updated Jul 1, 2025Jul 1, 2025

• ome-codecs

  Public
  OME image compression (coder-decoder implementations)

  codecs

  Java

  •

  Other

  •12•4•2•0•Updated Jul 1, 2025Jul 1, 2025