Python package testing/installation failing, due to missing *.h file in non-existent directory! #3262

capn-freako · 2019-07-19T01:23:36Z

Attempting to follow the instructions in docs/pytorch.md, Python package testing and installation are failing:

(pytorch)
dbanas@Davids-MacBook-Pro:~/Documents/Projects/PyTorch-Glow/glow/torch_glow
$ python setup.py test --cmake_prefix_path=/usr/local/Cellar/llvm\@7/7.0.1/lib/cmake/llvm/
{snip}
[ 94%] Building CXX object tools/loader/CMakeFiles/text-translator.dir/TextTranslator.cpp.o
/Users/dbanas/Documents/Projects/PyTorch-Glow/glow/torch_glow/src/binding.cpp:20:10: fatal error: 'torch/csrc/jit/operator_options.h' file not found
#include <torch/csrc/jit/operator_options.h>
         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/dbanas/Documents/Projects/PyTorch-Glow/glow/torch_glow/src/PyTorchModelLoader.cpp:533:35: error: no member named 'toVector' in namespace 'c10::impl'
    const auto &vals = c10::impl::toVector(valsList);
                       ~~~~~~~~~~~^
1 error generated.
make[2]: *** [torch_glow/src/CMakeFiles/_torch_glow.dir/binding.cpp.o] Error 1
make[2]: *** Waiting for unfinished jobs....
{snip}

The really strange thing is: none of the intermediate directories on the path to that missing *.h file exist!

dbanas@Davids-MacBook-Pro:~/Documents/Projects/PyTorch-Glow
$ find . -type f -name 'operator_options.h'

dbanas@Davids-MacBook-Pro:~/Documents/Projects/PyTorch-Glow
$ find . -type d -name 'jit'                                                                                                                               

dbanas@Davids-MacBook-Pro:~/Documents/Projects/PyTorch-Glow
$ find . -type d -name 'csrc'

dbanas@Davids-MacBook-Pro:~/Documents/Projects/PyTorch-Glow
$ find . -type d -name 'torch'

dbanas@Davids-MacBook-Pro:~/Documents/Projects/PyTorch-Glow

The text was updated successfully, but these errors were encountered:

rdzhabarov · 2019-07-19T03:16:18Z

@jackm321 ^

capn-freako · 2019-07-19T14:28:41Z

The results of some sleuthing:

I found the torch/csrc/jit/ directory:

dbanas@Davids-MacBook-Pro:~/Documents/Projects/PyTorch-Glow
$ ls /anaconda3/envs/pytorch/lib/python3.7/site-packages/torch/include/torch/csrc/jit/
alias_info.h              interned_strings_class.h  python_ir.h
argument_spec.h           interpreter.h             python_tracer.h
attributes.h              ir.h                      resource_guard.h
autodiff.h                ir_views.h                scope.h
code_template.h           irparser.h                script/
constants.h               named_value.h             source_location.h
custom_operator.h         netdef_converter.h        source_range.h
dynamic_dag.h             node_hashing.h            subgraph_matcher.h
export.h                  operator.h                symbolic_script.h
graph_executor.h          pass_manager.h            symbolic_variable.h
graph_node_list.h         passes/                   testing/
hooks_for_testing.h       pickler.h                 tracer.h
import.h                  profiling_record.h        tracing_state.h
import_export_helpers.h   pybind.h                  variable_tensor_list.h
import_source.h           pybind_utils.h
init.h                    python_arg_flatten.h

However, there's no operator_options.h file present in that directory.

On a whim, I made the following change to the binding.cpp file:

dbanas@Davids-MacBook-Pro:~/Documents/Projects/PyTorch-Glow/glow/torch_glow
$ git diff
diff --git a/torch_glow/src/binding.cpp b/torch_glow/src/binding.cpp
index f2254a42..7961df83 100644
--- a/torch_glow/src/binding.cpp
+++ b/torch_glow/src/binding.cpp
@@ -17,7 +17,7 @@
 #include <pybind11/pybind11.h>

 #include <torch/csrc/jit/custom_operator.h>
-#include <torch/csrc/jit/operator_options.h>
+#include <torch/csrc/jit/operator.h>
 #include <torch/csrc/jit/pass_manager.h>
 #include <torch/csrc/jit/passes/graph_fuser.h>

And then attempted: python setup.py install, again, which generated these errors:

[ 98%] Built target GlowOnnxifiManagerTest
/Users/dbanas/Documents/Projects/PyTorch-Glow/glow/torch_glow/src/PyTorchModelLoader.cpp:533:35: error: no member named 'toVector' in namespace 'c10::impl'
    const auto &vals = c10::impl::toVector(valsList);
                       ~~~~~~~~~~~^
/Users/dbanas/Documents/Projects/PyTorch-Glow/glow/torch_glow/src/binding.cpp:53:23: error: no member named 'OperatorOptions' in namespace 'c10'
  auto options = c10::OperatorOptions();
                 ~~~~~^
/Users/dbanas/Documents/Projects/PyTorch-Glow/glow/torch_glow/src/binding.cpp:54:32: error: no member named 'AliasAnalysisKind' in namespace 'at'
  options.setAliasAnalysis(at::AliasAnalysisKind::PURE);
                           ~~~~^
/Users/dbanas/Documents/Projects/PyTorch-Glow/glow/torch_glow/src/binding.cpp:72:19: error: no member named 'CustomFuseGraph' in namespace 'torch::jit'
      torch::jit::CustomFuseGraph(g, PyTorchModelLoader::isNodeSupported,
      ~~~~~~~~~~~~^
1 error generated.
make[2]: *** [torch_glow/src/CMakeFiles/_torch_glow.dir/PyTorchModelLoader.cpp.o] Error 1
make[2]: *** Waiting for unfinished jobs....
3 errors generated.
make[2]: *** [torch_glow/src/CMakeFiles/_torch_glow.dir/binding.cpp.o] Error 1
make[1]: *** [torch_glow/src/CMakeFiles/_torch_glow.dir/all] Error 2
make: *** [all] Error 2
Traceback (most recent call last):
  File "setup.py", line 215, in <module>
    url='https://github.com/pytorch/glow',
  File "/anaconda3/envs/pytorch/lib/python3.7/site-packages/setuptools/__init__.py", line 145, in setup
    return distutils.core.setup(**attrs)
  File "/anaconda3/envs/pytorch/lib/python3.7/distutils/core.py", line 148, in setup
    dist.run_commands()
  File "/anaconda3/envs/pytorch/lib/python3.7/distutils/dist.py", line 966, in run_commands
    self.run_command(cmd)
  File "/anaconda3/envs/pytorch/lib/python3.7/distutils/dist.py", line 985, in run_command
    cmd_obj.run()
  File "/anaconda3/envs/pytorch/lib/python3.7/site-packages/setuptools/command/install.py", line 67, in run
    self.do_egg_install()
  File "/anaconda3/envs/pytorch/lib/python3.7/site-packages/setuptools/command/install.py", line 109, in do_egg_install
    self.run_command('bdist_egg')
  File "/anaconda3/envs/pytorch/lib/python3.7/distutils/cmd.py", line 313, in run_command
    self.distribution.run_command(command)
  File "/anaconda3/envs/pytorch/lib/python3.7/distutils/dist.py", line 985, in run_command
    cmd_obj.run()
  File "/anaconda3/envs/pytorch/lib/python3.7/site-packages/setuptools/command/bdist_egg.py", line 172, in run
    cmd = self.call_command('install_lib', warn_dir=0)
  File "/anaconda3/envs/pytorch/lib/python3.7/site-packages/setuptools/command/bdist_egg.py", line 158, in call_command
    self.run_command(cmdname)
  File "/anaconda3/envs/pytorch/lib/python3.7/distutils/cmd.py", line 313, in run_command
    self.distribution.run_command(command)
  File "/anaconda3/envs/pytorch/lib/python3.7/distutils/dist.py", line 985, in run_command
    cmd_obj.run()
  File "/anaconda3/envs/pytorch/lib/python3.7/site-packages/setuptools/command/install_lib.py", line 11, in run
    self.build()
  File "/anaconda3/envs/pytorch/lib/python3.7/distutils/command/install_lib.py", line 107, in build
    self.run_command('build_ext')
  File "/anaconda3/envs/pytorch/lib/python3.7/distutils/cmd.py", line 313, in run_command
    self.distribution.run_command(command)
  File "/anaconda3/envs/pytorch/lib/python3.7/distutils/dist.py", line 985, in run_command
    cmd_obj.run()
  File "setup.py", line 152, in run
    self.run_command('cmake_build')
  File "/anaconda3/envs/pytorch/lib/python3.7/distutils/cmd.py", line 313, in run_command
    self.distribution.run_command(command)
  File "/anaconda3/envs/pytorch/lib/python3.7/distutils/dist.py", line 985, in run_command
    cmd_obj.run()
  File "setup.py", line 141, in run
    self._run_build()
  File "setup.py", line 133, in _run_build
    subprocess.check_call(build_args)
  File "/anaconda3/envs/pytorch/lib/python3.7/subprocess.py", line 347, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command '['/usr/local/bin/cmake', '--build', '.', '--', '-j', '12']' returned non-zero exit status 2.

jackm321 · 2019-07-19T15:20:17Z

These look like things that are currently available only in pytorch nightly build but not in regular build so I'm pretty sure the issue is that it's not using the nightly version.
I realized recently that installing torchvision also installs regular build of pytorch so that could cause this to happen. I need to remove that from docs/pytorch.md. If you unsinstall the torch packages from you environment and then only install nightly pytorch build and not torchvision does it fix the issue?

jackm321 · 2019-07-19T15:26:03Z

Hm actually I removed the torchvision instructions already so that may not be the cause of the wrong torch version but I think that still may be the issue. If you run python -c "import torch; print(torch.__version__)" where you were running the setup script, what do you get? It should be something with dev in it.

capn-freako · 2019-07-19T16:56:37Z

@jackm321 , thanks for your reply!

(pytorch)
dbanas@Davids-MacBook-Pro:~/Documents/Projects/PyTorch-Glow/glow/torch_glow
$ python -c 'import torch; print(torch.__version__)'
1.1.0

capn-freako · 2019-07-19T17:05:29Z

Trying to follow your second comment...

At this site, I'd originally selected Stable (1.1).
And it prescribed this command: conda install pytorch torchvision -c pytorch, which I ran.
I notice that, if I instead select Preview (Nightly), then it prescribes this command: conda install pytorch-nightly -c pytorch.
Are you suggesting that I:

run the command: conda uninstall pytorch,
run the command: conda uninstall torchvision,
run the command: conda install torchvision, and
run the command: conda install pytorch-nightly -c pytorch?

capn-freako · 2019-07-19T17:18:10Z

Okay, I tried the 4 steps I proposed, above, with the following results:

Succeeded.
Failed, but only because step Remove a failing LRN test. #1 removed the torchvision package.
Failed, complaining that the torchvision package couldn't be found in any of the channels: main, free, r, or conda-forge.
Succeeded.

Then, running python setup.py test from within the glow/torch_glow/ subdirectory succeeds:

==================================================================== test session starts ====================================================================
platform darwin -- Python 3.7.3, pytest-5.0.1, py-1.8.0, pluggy-0.12.0 -- /anaconda3/envs/pytorch/bin/python
cachedir: .pytest_cache
rootdir: /Users/dbanas/Documents/Projects/PyTorch-Glow/glow/torch_glow, inifile: setup.cfg, testpaths: tests
collected 17 items

tests/nodes/adaptive_avg_pool2d_test.py::test_adaptive_avg_pool2d_basic PASSED                                                                        [  5%]
tests/nodes/adaptive_avg_pool2d_test.py::test_adaptive_avg_pool2d_nonsquare_inputs PASSED                                                             [ 11%]
tests/nodes/adaptive_avg_pool2d_test.py::test_adaptive_avg_pool2d_nonsquare_outputs PASSED                                                            [ 17%]
tests/nodes/add_test.py::test_add_basic PASSED                                                                                                        [ 23%]
tests/nodes/add_test.py::test_add_inplace PASSED                                                                                                      [ 29%]
tests/nodes/batchnorm_test.py::test_batchnorm_basic PASSED                                                                                            [ 35%]
tests/nodes/batchnorm_test.py::test_batchnorm_with_weights PASSED                                                                                     [ 41%]
tests/nodes/conv2d_test.py::test_conv2d_basic PASSED                                                                                                  [ 47%]
tests/nodes/conv2d_test.py::test_conv2d_with_bias PASSED                                                                                              [ 52%]
tests/nodes/conv2d_test.py::test_conv2d_param_sweep SKIPPED                                                                                           [ 58%]
tests/nodes/div_test.py::test_div_basic PASSED                                                                                                        [ 64%]
tests/nodes/maxpool2d_test.py::test_max_pool2d_basic PASSED                                                                                           [ 70%]
tests/nodes/maxpool2d_test.py::test_max_pool2d_with_args PASSED                                                                                       [ 76%]
tests/nodes/mul_test.py::test_mul_basic PASSED                                                                                                        [ 82%]
tests/nodes/relu_test.py::test_relu_basic PASSED                                                                                                      [ 88%]
tests/nodes/relu_test.py::test_relu_inplace PASSED                                                                                                    [ 94%]
tests/nodes/sub_test.py::test_sub_basic PASSED                                                                                                        [100%]

=========================================================== 16 passed, 1 skipped in 0.57 seconds ============================================================

(I assume the one skipped test is expected; is that true?)

And:

(pytorch)
dbanas@Davids-MacBook-Pro:~/Documents/Projects/PyTorch-Glow/glow/torch_glow
$ python -c 'import torch; print(torch.__version__)'
1.2.0.dev20190719

which I presume is correct, since you said the version number should have a "dev" in it.

And, finally, referring to the instructions at the very end of the docs/pytorch.md file:

(pytorch)
dbanas@Davids-MacBook-Pro:~/Documents/Projects/PyTorch-Glow/glow/torch_glow
$ python -c 'import torch_glow'
(pytorch)
dbanas@Davids-MacBook-Pro:~/Documents/Projects/PyTorch-Glow/glow/torch_glow
$

which I presume indicates success, since no error was reported.

jackm321 · 2019-07-19T20:40:55Z

Awesome! Yep looks like that did the trick. The 1 skipped test expected.
Going to close this now, feel free to reopen if something isn't working.

jackm321 closed this as completed Jul 19, 2019

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Uh oh!

Python package testing/installation failing, due to missing *.h file in non-existent directory! #3262

Python package testing/installation failing, due to missing *.h file in non-existent directory! #3262

capn-freako commented Jul 19, 2019

rdzhabarov commented Jul 19, 2019

Uh oh!

capn-freako commented Jul 19, 2019

Uh oh!

jackm321 commented Jul 19, 2019

Uh oh!

jackm321 commented Jul 19, 2019

Uh oh!

capn-freako commented Jul 19, 2019

Uh oh!

capn-freako commented Jul 19, 2019

Uh oh!

capn-freako commented Jul 19, 2019

Uh oh!

jackm321 commented Jul 19, 2019

Uh oh!

Python package testing/installation failing, due to missing *.h file in non-existent directory! #3262

Python package testing/installation failing, due to missing *.h file in non-existent directory! #3262

Comments

capn-freako commented Jul 19, 2019

rdzhabarov commented Jul 19, 2019

Uh oh!

capn-freako commented Jul 19, 2019

Uh oh!

jackm321 commented Jul 19, 2019

Uh oh!

jackm321 commented Jul 19, 2019

Uh oh!

capn-freako commented Jul 19, 2019

Uh oh!

capn-freako commented Jul 19, 2019

Uh oh!

capn-freako commented Jul 19, 2019

Uh oh!

jackm321 commented Jul 19, 2019

Uh oh!