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Add concat algorithm parameter to vcf_to_zarr #365

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tomwhite opened this issue Nov 2, 2020 · 0 comments
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Add concat algorithm parameter to vcf_to_zarr #365

tomwhite opened this issue Nov 2, 2020 · 0 comments
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IO Issues related to reading and writing common third-party file formats

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tomwhite commented Nov 2, 2020

This would allow (regular) VCF conversion to use the optimized path introduced in #324 (as the default), in addition to the internal Xarray/Dask concat and rechunk implementations that suffer from memory issues.
@tomwhite tomwhite added the IO Issues related to reading and writing common third-party file formats label Nov 2, 2020
@tomwhite tomwhite mentioned this issue Nov 2, 2020
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@tomwhite tomwhite changed the title Add concat algorithm parameter to zarrs_to_dataset Add concat algorithm parameter to vcf_to_zarr Sep 13, 2021
tomwhite added a commit to tomwhite/sgkit that referenced this issue Sep 13, 2021
@tomwhite
Add concat algorithm parameter to vcf_to_zarr (sgkit-dev#365)
662be9c 
Use variable-length strings for storing alleles in Zarr sgkit-dev#643
@tomwhite tomwhite mentioned this issue Sep 13, 2021
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mergify bot pushed a commit that referenced this issue Sep 16, 2021
@tomwhite @mergify
Add concat algorithm parameter to vcf_to_zarr (#365)
45f1267 
Use variable-length strings for storing alleles in Zarr #643
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