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Eliminate automatically computed intermediate variables (for popgen) #342

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tomwhite
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This is #286 for the popgen code. There is also some code in PCA that needs changing, but it may need #282 first - what do you think @eric-czech?

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codecov-io commented Oct 21, 2020

Codecov Report

Merging #342 into master will increase coverage by 0.13%.
The diff coverage is 100.00%.

Impacted file tree graph

@@            Coverage Diff             @@
##           master     #342      +/-   ##
==========================================
+ Coverage   96.49%   96.62%   +0.13%     
==========================================
  Files          29       29              
  Lines        2053     2044       -9     
==========================================
- Hits         1981     1975       -6     
+ Misses         72       69       -3     
Impacted Files Coverage Δ
sgkit/__init__.py 100.00% <100.00%> (ø)
sgkit/stats/popgen.py 66.38% <100.00%> (-0.02%) ⬇️

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@tomwhite
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Closing, since we decided not to do this.

@tomwhite tomwhite closed this Oct 22, 2020
@hammer
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hammer commented Oct 22, 2020

Should we file an issue to capture the “tighten up” approach discussed today?

@eric-czech
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FYI I added some details on that in https://github.com/pystatgen/sgkit/issues/286#issuecomment-714664142

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4 participants