Talleres Internacionales de Bioinformática - Centro de Ciencias Genómicas, UNAM, Cuernavaca, México

a sequence analysis workflow for low-input nanopore sequencing

Scripts for executing a filtering, clustering and identification pipeline for eDNA samples.

A shell script that uses diamond to compute the reciprocal best hits between two proteomes in a rush.

Set of scripts to process HybSeq target enrichment HTS data (on computing grids).

Common BASH routines for computational biology

Scripts to download the PacBio, ONT and MiSeq datasets used in https://www.nature.com/articles/s41598-017-03996-z and run the pipelines as described in the paper or simply download the final assemblies as generated by the authors.

Shell script to sort .gtf files

A gallimaufry of questionable shellscripts

A simple batch submission script to submit jobs to AutoDock Vina on Linux and MacOS developed by Bhavesh Ashok.

Assorted scripts in Perl, Bash, R and whatsoever directly from a bioinformatician's scripts/ folder

Bu sayfada Biyoinformatik analizler ile ilgili eğitim materyalleri bulunmaktadır.

SLURM job temps @UAlbany

Synchronise Nanopore reads with a server.

Set of scripts to run STRUCTURE in parallel on computing grids like MetaCentrum. Scripts are designed for grids and clusters using PBS Pro, but can be easily adopted for another queue system.

Scripts for Basecalling on GridION Sequenicng machines from Oxford Nanopore

A script that efficiently processes multiple '.fastq' files, automatically organizing the pre-trimmed output into a folder named 'qc_reports_pretrim' for streamlined quality control and sequence data analysis.

CocoTF: a workflow to identify context specific co-occurring TF motifs using bedtools, Homer and R packages.

Shell script to post-process OrthoFinder's output into pairwise tables used in macrosyntR

Toolbox for comparative genomics