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phylogenetic-trees

Here are 12 public repositories matching this topic...

r_phylogenetics_worshop

agmcfarland / r_phylogenetics_worshop

Using ggtree to build phylogenetic trees

visualization workshop phylogenetic-trees

Updated Nov 6, 2024
HTML

mooreryan / iroki

Super snazzy online phylogenetic tree viewer with automatic customization using simple, tab-separated text files.

visualization bioinformatics phylogenetic-trees ecology microbial-ecology

Updated Apr 10, 2023
HTML

ncbi / tree-tool

Incremental building of phylogenetic distance trees

bioinformatics evolution phylogenetic-trees data-analysis distance-measures bioinformatics-tool

Updated Jul 31, 2025
HTML

AABoyles / MicrobeTrace

The Visualization Multitool for Molecular Epidemiology and Bioinformatics

bioinformatics genomics network-graph phylogenetic-trees phylogenetics epidemiology network-visualization network-analysis hiv cdc phylogenomics phylogeny sequence-alignment genomic-data-analysis genomics-visualization pathogens

Updated Sep 13, 2024
HTML

AndreaRubbi / Pear-EBI

Calculates distances of trees in large collections. Embeds distances and plot the embeddings with dynamic interfaces.

bioinformatics embeddings phylogenetic-trees phylogenetics

Updated Jun 28, 2024
HTML

camayal / treetom

Develop repo for TreeToM

phylogenetic-trees biogeography

Updated Mar 14, 2023
HTML

phac-nml / ArborView

A new way to visualize beautiful phylogenetic trees alongside contextual data.

visualization phylogenetic-trees trees dendrogram ultrametric

Updated Aug 1, 2025
HTML

miamib34ch / HSE-Bioinformatics

Practical and home works in the discipline Bioinformatics.

python bioinformatics snps phylogenetic-trees hi-c genome-annotation histone-modifications rna-seq-analysis genome-analysis genome-assembly sequence-alignment quadruplexes gene-prediction single-cell-rna-seq genetic-map-visualization chromhmm methylation-analysis

Updated Sep 25, 2023
HTML

kris96tian / Phylogenetic_Tree_Generator

Web App for constructing phylogenetic trees using various clustering methods and algorithms (like Neighbor-Joining, UPGMA or Maximum Parsimony)

phylogenetic-trees phylogenetics evolutionary-algorithms neighbor-joining upgma-clustering distance-matrix maximum-parsimony clustering-trees

Updated Dec 5, 2024
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01shruti / Clustering-Algorithm-and-visualisations-using-R

r clustering phylogenetic-trees rprogramming pvc dendrogram hopkins

Updated Mar 1, 2017
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NIGMS / Introduction-to-Phylogenetics

This repository offers a tutorial for assembling RADseq data and performing basic population genetic and phylogenetic analyses. It runs on Google Cloud Platform using Jupyter notebooks and covers RADseq data processing, population structure analysis, and phylogenetic tree inference and plotting.

aws phylogenetic-trees phylogenetics comparative-genomics nih evolutionary-biology sagemaker sars-cov-2 disease-dynamics phylogenetic-reconstruction

Updated Jun 6, 2025
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changlabtw / wpSBOOT

bootstrap phylogenetic-trees alignment concatenate

Updated Mar 20, 2021
HTML

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