Updating #1
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Updating #1
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small tweaks to the documentation
* updated io/vcf_read.py and stats/misc.py for pandas deprecation. changed all occurences of pandas.DataFrame.from_items(items) to pandas.DataFrame.from_dict(OrderedDict(items)) * add missing import * release notes [ci skip]
* add sphinx-issues * update release notes to use sphinx-issues * fix pep8 * fix sphinx problems [ci skip]
* refactor io tests * test and fix for gff3 attributes fill * make windows happy * release notes * fix more fill values
…#235) * test and fix ambiguous subpop test * release notes
* add pytest, upgrade requirements * WIP begin migration to pytest * migrate test style to pytest * WIP migrate test style to pytest * WIP migrate test style to pytest * pytest passes; prep for pyup * release notes [ci skip] * further pytest fixes * recythonize * pytest.warns instead of pytest.raises warnings
* test and fix for tajima d min sites * release notes;
* write attributes to zarr in single op * release notes [ci skip]
* move sfs tests * add n param to sfs functions
* test and correct reference implementation for allele counts map alleles * optimise allele counts map alleles * fix bugs * release notes [ci skip]
* fix nan handling in ld functions * release notes
* allow multiallelics in EHH decay * release notes [ci skip]
* test and fix to avoid rename clashes when reading VCF * release notes [ci skip] * test and fix case insensistive clashes
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Update the project to the last version