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Fixed MemoryStore.list_dir #2117

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Aug 26, 2024
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16 changes: 11 additions & 5 deletions src/zarr/store/memory.py
Original file line number Diff line number Diff line change
Expand Up @@ -114,9 +114,15 @@ async def list_dir(self, prefix: str) -> AsyncGenerator[str, None]:

if prefix == "":
keys_unique = set(k.split("/")[0] for k in self._store_dict.keys())
for key in keys_unique:
yield key
else:
for key in self._store_dict:
if key.startswith(prefix + "/") and key != prefix:
yield key.removeprefix(prefix + "/").split("/")[0]
# Our dictionary doesn't contain directory markers, but we want to include
# a pseudo directory when there's a nested item and we're listing an
# intermediate level.
keys_unique = {
key.removeprefix(prefix + "/").split("/")[0]
for key in self._store_dict
if key.startswith(prefix + "/") and key != prefix
}

for key in keys_unique:
yield key
2 changes: 1 addition & 1 deletion src/zarr/store/remote.py
Original file line number Diff line number Diff line change
Expand Up @@ -202,7 +202,7 @@ async def list_dir(self, prefix: str) -> AsyncGenerator[str, None]:
except FileNotFoundError:
return
for onefile in (a.replace(prefix + "/", "") for a in allfiles):
yield onefile
yield onefile.removeprefix(self.path).removeprefix("/")

async def list_prefix(self, prefix: str) -> AsyncGenerator[str, None]:
for onefile in await self._fs._ls(prefix, detail=False):
Expand Down
32 changes: 30 additions & 2 deletions src/zarr/testing/store.py
Original file line number Diff line number Diff line change
Expand Up @@ -191,9 +191,17 @@ async def test_list_dir(self, store: S) -> None:
assert out == []
assert [k async for k in store.list_dir("foo")] == []
await store.set("foo/zarr.json", Buffer.from_bytes(b"bar"))
await store.set("foo/c/1", Buffer.from_bytes(b"\x01"))
await store.set("group-0/zarr.json", Buffer.from_bytes(b"\x01")) # group
await store.set("group-0/group-1/zarr.json", Buffer.from_bytes(b"\x01")) # group
await store.set("group-0/group-1/a1/zarr.json", Buffer.from_bytes(b"\x01"))
await store.set("group-0/group-1/a2/zarr.json", Buffer.from_bytes(b"\x01"))
await store.set("group-0/group-1/a3/zarr.json", Buffer.from_bytes(b"\x01"))

keys_expected = ["zarr.json", "c"]
keys_expected = ["foo", "group-0"]
keys_observed = [k async for k in store.list_dir("")]
assert set(keys_observed) == set(keys_expected)

keys_expected = ["zarr.json"]
keys_observed = [k async for k in store.list_dir("foo")]

assert len(keys_observed) == len(keys_expected), keys_observed
Expand All @@ -202,3 +210,23 @@ async def test_list_dir(self, store: S) -> None:
keys_observed = [k async for k in store.list_dir("foo/")]
assert len(keys_expected) == len(keys_observed), keys_observed
assert set(keys_observed) == set(keys_expected), keys_observed

keys_observed = [k async for k in store.list_dir("group-0")]
keys_expected = ["zarr.json", "group-1"]

assert len(keys_observed) == len(keys_expected), keys_observed
assert set(keys_observed) == set(keys_expected), keys_observed

keys_observed = [k async for k in store.list_dir("group-0/")]
assert len(keys_expected) == len(keys_observed), keys_observed
assert set(keys_observed) == set(keys_expected), keys_observed

keys_observed = [k async for k in store.list_dir("group-0/group-1")]
keys_expected = ["zarr.json", "a1", "a2", "a3"]

assert len(keys_observed) == len(keys_expected), keys_observed
assert set(keys_observed) == set(keys_expected), keys_observed

keys_observed = [k async for k in store.list_dir("group-0/group-1")]
assert len(keys_expected) == len(keys_observed), keys_observed
assert set(keys_observed) == set(keys_expected), keys_observed