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Fix test coverage #3334

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Merged
merged 2 commits into from
Aug 4, 2025
Merged

Fix test coverage #3334

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a6f3326
Fix test coverage
dstansby Aug 4, 2025
a609d06
Run GPU tests in GPU CI
dstansby Aug 4, 2025
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2 changes: 1 addition & 1 deletion .github/workflows/gpu_test.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -63,7 +63,7 @@ jobs:
hatch env run -e gputest.py${{ matrix.python-version }}-${{ matrix.numpy-version }}-${{ matrix.dependency-set }} list-env
- name: Run Tests
run: |
hatch env run --env gputest.py${{ matrix.python-version }}-${{ matrix.numpy-version }}-${{ matrix.dependency-set }} run-coverage
hatch env run --env gputest.py${{ matrix.python-version }}-${{ matrix.numpy-version }}-${{ matrix.dependency-set }} run-coverage-gpu

- name: Upload coverage
uses: codecov/codecov-action@13ce06bfc6bbe3ecf90edbbf1bc32fe5978ca1d3 # v5.3.1
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68 changes: 27 additions & 41 deletions pyproject.toml
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Expand Up @@ -150,6 +150,12 @@ dependencies = [
]
features = ["test"]

[tool.hatch.envs.test.env-vars]
# Required to test with a pytest plugin; see https://pytest-cov.readthedocs.io/en/latest/plugins.html
COV_CORE_SOURCE = "src"
COV_CORE_CONFIG = ".coveragerc"
COV_CORE_DATAFILE = ".coverage.eager"

[[tool.hatch.envs.test.matrix]]
python = ["3.11", "3.12", "3.13"]
numpy = ["1.26", "2.2"]
Expand All @@ -161,25 +167,18 @@ matrix.deps.dependencies = [
]

[tool.hatch.envs.test.scripts]
run-coverage = "pytest --cov-config=pyproject.toml --cov=pkg --cov-report xml --cov=src --junitxml=junit.xml -o junit_family=legacy"
run-coverage-html = "pytest --cov-config=pyproject.toml --cov=pkg --cov-report html --cov=src"
run-coverage = "pytest --cov-config=pyproject.toml --cov=src --cov-append --cov-report xml --junitxml=junit.xml -o junit_family=legacy"
run-coverage-html = "pytest --cov-config=pyproject.toml --cov=src --cov-append --cov-report html"
run-coverage-gpu = "pip install cupy-cuda12x && pytest -m gpu --cov-config=pyproject.toml --cov=src --cov-append --cov-report xml --junitxml=junit.xml -o junit_family=legacy"
run = "run-coverage --no-cov"
run-pytest = "run"
run-verbose = "run-coverage --verbose"
run-mypy = "mypy src"
run-hypothesis = "run-coverage -nauto --run-slow-hypothesis tests/test_properties.py tests/test_store/test_stateful*"
list-env = "pip list"

[tool.hatch.envs.doctest]
features = ["test", "optional", "remote", "remote_tests"]
description = "Test environment for doctests"

[tool.hatch.envs.doctest.scripts]
run = "rm -r data/; pytest docs/user-guide --doctest-glob='*.rst'"
fix = "rm -r data/; pytest docs/user-guide --doctest-glob='*.rst' --accept"
list-env = "pip list"

[tool.hatch.envs.gputest]
template = "test"
dependencies = [
"numpy~={matrix:numpy}",
"universal_pathlib",
Expand All @@ -191,22 +190,8 @@ python = ["3.11", "3.12", "3.13"]
numpy = ["1.26", "2.2"]
version = ["minimal"]

[tool.hatch.envs.gputest.scripts]
run-coverage = "pytest -m gpu --cov-config=pyproject.toml --cov=pkg --cov-report xml --cov=src --junitxml=junit.xml -o junit_family=legacy"
run = "run-coverage --no-cov"
run-verbose = "run-coverage --verbose"
run-mypy = "mypy src"
run-hypothesis = "run-coverage --hypothesis-profile ci --run-slow-hypothesis tests/test_properties.py tests/test_store/test_stateful*"
list-env = "pip list"

[tool.hatch.envs.docs]
features = ['docs']

[tool.hatch.envs.docs.scripts]
build = "cd docs && make html"
serve = "sphinx-autobuild docs docs/_build --host 0.0.0.0"

[tool.hatch.envs.upstream]
template = 'test'
python = "3.13"
dependencies = [
'packaging @ git+https://github.com/pypa/packaging',
Expand All @@ -226,20 +211,12 @@ PIP_INDEX_URL = "https://pypi.anaconda.org/scientific-python-nightly-wheels/simp
PIP_EXTRA_INDEX_URL = "https://pypi.org/simple/"
PIP_PRE = "1"

[tool.hatch.envs.upstream.scripts]
run = "pytest --verbose"
run-mypy = "mypy src"
run-hypothesis = "pytest --hypothesis-profile ci tests/test_properties.py tests/test_store/test_stateful*"
run-coverage = "pytest --cov-config=pyproject.toml --cov=pkg --cov-report xml --cov=src --junitxml=junit.xml -o junit_family=legacy"
run-coverage-gpu = "pip install cupy-cuda12x && pytest -m gpu --cov-config=pyproject.toml --cov=pkg --cov-report xml --cov=src --junitxml=junit.xml -o junit_family=legacy"
run-coverage-html = "pytest --cov-config=pyproject.toml --cov=pkg --cov-report html --cov=src"
list-env = "pip list"

[tool.hatch.envs.min_deps]
description = """Test environment for minimum supported dependencies

See Spec 0000 for details and drop schedule: https://scientific-python.org/specs/spec-0000/
"""
template = "test"
python = "3.11"
dependencies = [
'zarr[remote]',
Expand All @@ -257,13 +234,22 @@ dependencies = [
'zarr[remote_tests]',
]

[tool.hatch.envs.min_deps.scripts]
run = "pytest --verbose"
run-hypothesis = "pytest --hypothesis-profile ci tests/test_properties.py tests/test_store/test_stateful*"

[tool.hatch.envs.doctest]
features = ["test", "optional", "remote", "remote_tests"]
description = "Test environment for doctests"

[tool.hatch.envs.doctest.scripts]
run = "rm -r data/; pytest docs/user-guide --doctest-glob='*.rst'"
fix = "rm -r data/; pytest docs/user-guide --doctest-glob='*.rst' --accept"
list-env = "pip list"
run-coverage = "pytest --cov-config=pyproject.toml --cov=pkg --cov-report xml --cov=src --junitxml=junit.xml -o junit_family=legacy"
run-coverage-gpu = "pip install cupy-cuda12x && pytest -m gpu --cov-config=pyproject.toml --cov=pkg --cov-report xml --cov=src --junitxml=junit.xml -o junit_family=legacy"
run-coverage-html = "pytest --cov-config=pyproject.toml --cov=pkg --cov-report html --cov=src"

[tool.hatch.envs.docs]
features = ['docs']

[tool.hatch.envs.docs.scripts]
build = "cd docs && make html"
serve = "sphinx-autobuild docs docs/_build --host 0.0.0.0"

[tool.ruff]
line-length = 100
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