Skip to content

Release 24.11.1 #8188

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
merged 2 commits into from
Nov 13, 2024
Merged

Release 24.11.1 #8188

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
9fbc67a
Release 24.11.1
fm3 Nov 13, 2024
991d029
Merge branch 'master' into release-24.11.1
fm3 Nov 13, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
50 changes: 50 additions & 0 deletions CHANGELOG.released.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -7,6 +7,56 @@ The format is based on [Keep a Changelog](http://keepachangelog.com/en/1.0.0/)
and this project adheres to [Calendar Versioning](http://calver.org/) `0Y.0M.MICRO`.
For upgrade instructions, please check the [migration guide](MIGRATIONS.released.md).

## [24.11.1](https://github.com/scalableminds/webknossos/releases/tag/24.11.1) - 2024-11-13
[Commits](https://github.com/scalableminds/webknossos/compare/24.10.0...24.11.1)

### Highlights
- It is now possible to add metadata in annotations to Trees and Segments. [#7875](https://github.com/scalableminds/webknossos/pull/7875)
- Added a button to the search popover in the skeleton and segment tab to select all matching non-group results. [#8123](https://github.com/scalableminds/webknossos/pull/8123)

### Added
- It is now possible to add metadata in annotations to Trees and Segments. [#7875](https://github.com/scalableminds/webknossos/pull/7875)
- Added a summary row to the time tracking overview, where times and annotations/tasks are summed. [#8092](https://github.com/scalableminds/webknossos/pull/8092)
- Most sliders have been improved: Wheeling above a slider now changes its value and double-clicking its knob resets it to its default value. [#8095](https://github.com/scalableminds/webknossos/pull/8095)
- It is now possible to search for unnamed segments with the full default name instead of only their id. [#8133](https://github.com/scalableminds/webknossos/pull/8133)
- Increased loading speed for precomputed meshes. [#8110](https://github.com/scalableminds/webknossos/pull/8110)
- Added a button to the search popover in the skeleton and segment tab to select all matching non-group results. [#8123](https://github.com/scalableminds/webknossos/pull/8123)
- Unified wording in UI and code: “Magnification”/“mag” is now used in place of “Resolution“ most of the time, compare [https://docs.webknossos.org/webknossos/terminology.html](terminology document). [#8111](https://github.com/scalableminds/webknossos/pull/8111)
- Added support for adding remote OME-Zarr NGFF version 0.5 datasets. [#8122](https://github.com/scalableminds/webknossos/pull/8122)
- Workflow reports may be deleted by superusers. [#8156](https://github.com/scalableminds/webknossos/pull/8156)

### Changed
- Some mesh-related actions were disabled in proofreading-mode when using meshfiles that were created for a mapping rather than an oversegmentation. [#8091](https://github.com/scalableminds/webknossos/pull/8091)
- Admins can now see and cancel all jobs. The owner of the job is shown in the job list. [#8112](https://github.com/scalableminds/webknossos/pull/8112)
- Migrated nightly screenshot tests from CircleCI to GitHub actions. [#8134](https://github.com/scalableminds/webknossos/pull/8134)
- Migrated nightly screenshot tests for wk.org from CircleCI to GitHub actions. [#8135](https://github.com/scalableminds/webknossos/pull/8135)
- Thumbnails for datasets now use the selected mapping from the view configuration if available. [#8157](https://github.com/scalableminds/webknossos/pull/8157)

### Fixed
- Fixed a bug during dataset upload in case the configured `datastore.baseFolder` is an absolute path. [#8098](https://github.com/scalableminds/webknossos/pull/8098) [#8103](https://github.com/scalableminds/webknossos/pull/8103)
- Fixed bbox export menu item [#8152](https://github.com/scalableminds/webknossos/pull/8152)
- When trying to save an annotation opened via a link including a sharing token, the token is automatically discarded in case it is insufficient for update actions but the users token is. [#8139](https://github.com/scalableminds/webknossos/pull/8139)
- Fix that scrolling in the trees and segments tab did not work while dragging. [#8162](https://github.com/scalableminds/webknossos/pull/8162)
- Fixed that uploading a dataset which needs a conversion failed when the angstrom unit was configured for the conversion. [#8173](https://github.com/scalableminds/webknossos/pull/8173)
- Fixed that the skeleton search did not automatically expand groups that contained the selected tree [#8129](https://github.com/scalableminds/webknossos/pull/8129)
- Fixed interactions in the trees and segments tab like the search due to a bug introduced by [#8162](https://github.com/scalableminds/webknossos/pull/8162). [#8186](https://github.com/scalableminds/webknossos/pull/8186)
- Fixed a bug that zarr streaming version 3 returned the shape of mag (1, 1, 1) / the finest mag for all mags. [#8116](https://github.com/scalableminds/webknossos/pull/8116)
- Fixed sorting of mags in outbound zarr streaming. [#8125](https://github.com/scalableminds/webknossos/pull/8125)
- Fixed a bug where you could not create annotations for public datasets of other organizations. [#8107](https://github.com/scalableminds/webknossos/pull/8107)
- Users without edit permissions to a dataset can no longer delete sharing tokens via the API. [#8083](https://github.com/scalableminds/webknossos/issues/8083)
- Fixed downloading task annotations of teams you are not in, when accessing directly via URI. [#8155](https://github.com/scalableminds/webknossos/pull/8155)
- Removed unnecessary scrollbars in skeleton tab that occurred especially after resizing. [#8148](https://github.com/scalableminds/webknossos/pull/8148)
- Deleting a bounding box is now possible independently of a visible segmentation layer. [#8164](https://github.com/scalableminds/webknossos/pull/8164)
- S3-compliant object storages can now be accessed via HTTPS. [#8167](https://github.com/scalableminds/webknossos/pull/8167)
- Fixed that skeleton tree nodes were created with the wrong mag. [#8185](https://github.com/scalableminds/webknossos/pull/8185)
- Fixed the expected type of a tree node received from the server. Fixes nml export to include the `inMag` field correctly. [#8187](https://github.com/scalableminds/webknossos/pull/8187)
- Fixed a layout persistence bug leading to empty viewports, triggered when switching between orthogonal, flight, or oblique mode. [#8177](https://github.com/scalableminds/webknossos/pull/8177)

### Removed

### Breaking Changes


## [24.10.0](https://github.com/scalableminds/webknossos/releases/tag/24.10.0) - 2024-09-24
[Commits](https://github.com/scalableminds/webknossos/compare/24.08.1...24.10.0)

Expand Down
34 changes: 1 addition & 33 deletions CHANGELOG.unreleased.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -8,46 +8,14 @@ and this project adheres to [Calendar Versioning](http://calver.org/) `0Y.0M.MIC
For upgrade instructions, please check the [migration guide](MIGRATIONS.released.md).

## Unreleased
[Commits](https://github.com/scalableminds/webknossos/compare/24.10.0...HEAD)
[Commits](https://github.com/scalableminds/webknossos/compare/24.11.1...HEAD)
Copy link
Contributor

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

💡 Codebase verification

Tag 24.11.1 Not Found

The specified tag "24.11.1" does not exist in the repository. Please ensure the tag is created before updating the comparison URL.

🔗 Analysis chain

LGTM! Version reference correctly updated.

The comparison URL has been properly updated to reference version 24.11.1, which aligns with the PR objective of releasing this version.

Let's verify the version reference:

🏁 Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Verify that the version tag exists and matches our changelog
# Expected: The tag should exist in the repository

git fetch --tags
git tag | grep "24.11.1" || echo "Tag 24.11.1 not found"

Length of output: 4866


### Added
- It is now possible to add metadata in annotations to Trees and Segments. [#7875](https://github.com/scalableminds/webknossos/pull/7875)
- Added a summary row to the time tracking overview, where times and annotations/tasks are summed. [#8092](https://github.com/scalableminds/webknossos/pull/8092)
- Most sliders have been improved: Wheeling above a slider now changes its value and double-clicking its knob resets it to its default value. [#8095](https://github.com/scalableminds/webknossos/pull/8095)
- It is now possible to search for unnamed segments with the full default name instead of only their id. [#8133](https://github.com/scalableminds/webknossos/pull/8133)
- Increased loading speed for precomputed meshes. [#8110](https://github.com/scalableminds/webknossos/pull/8110)
- Added a button to the search popover in the skeleton and segment tab to select all matching non-group results. [#8123](https://github.com/scalableminds/webknossos/pull/8123)
- Unified wording in UI and code: “Magnification”/“mag” is now used in place of “Resolution“ most of the time, compare [https://docs.webknossos.org/webknossos/terminology.html](terminology document). [#8111](https://github.com/scalableminds/webknossos/pull/8111)
- Added support for adding remote OME-Zarr NGFF version 0.5 datasets. [#8122](https://github.com/scalableminds/webknossos/pull/8122)
- Workflow reports may be deleted by superusers. [#8156](https://github.com/scalableminds/webknossos/pull/8156)

### Changed
- Some mesh-related actions were disabled in proofreading-mode when using meshfiles that were created for a mapping rather than an oversegmentation. [#8091](https://github.com/scalableminds/webknossos/pull/8091)
- Admins can now see and cancel all jobs. The owner of the job is shown in the job list. [#8112](https://github.com/scalableminds/webknossos/pull/8112)
- Migrated nightly screenshot tests from CircleCI to GitHub actions. [#8134](https://github.com/scalableminds/webknossos/pull/8134)
- Migrated nightly screenshot tests for wk.org from CircleCI to GitHub actions. [#8135](https://github.com/scalableminds/webknossos/pull/8135)
- Thumbnails for datasets now use the selected mapping from the view configuration if available. [#8157](https://github.com/scalableminds/webknossos/pull/8157)
- Reading image files on datastore filesystem is now done asynchronously. [#8126](https://github.com/scalableminds/webknossos/pull/8126)

### Fixed
- Fixed a bug during dataset upload in case the configured `datastore.baseFolder` is an absolute path. [#8098](https://github.com/scalableminds/webknossos/pull/8098) [#8103](https://github.com/scalableminds/webknossos/pull/8103)
- Fixed bbox export menu item [#8152](https://github.com/scalableminds/webknossos/pull/8152)
- When trying to save an annotation opened via a link including a sharing token, the token is automatically discarded in case it is insufficient for update actions but the users token is. [#8139](https://github.com/scalableminds/webknossos/pull/8139)
- Fix that scrolling in the trees and segments tab did not work while dragging. [#8162](https://github.com/scalableminds/webknossos/pull/8162)
- Fixed that uploading a dataset which needs a conversion failed when the angstrom unit was configured for the conversion. [#8173](https://github.com/scalableminds/webknossos/pull/8173)
- Fixed that the skeleton search did not automatically expand groups that contained the selected tree [#8129](https://github.com/scalableminds/webknossos/pull/8129)
- Fixed interactions in the trees and segments tab like the search due to a bug introduced by [#8162](https://github.com/scalableminds/webknossos/pull/8162). [#8186](https://github.com/scalableminds/webknossos/pull/8186)
- Fixed a bug that zarr streaming version 3 returned the shape of mag (1, 1, 1) / the finest mag for all mags. [#8116](https://github.com/scalableminds/webknossos/pull/8116)
- Fixed sorting of mags in outbound zarr streaming. [#8125](https://github.com/scalableminds/webknossos/pull/8125)
- Fixed a bug where you could not create annotations for public datasets of other organizations. [#8107](https://github.com/scalableminds/webknossos/pull/8107)
- Users without edit permissions to a dataset can no longer delete sharing tokens via the API. [#8083](https://github.com/scalableminds/webknossos/issues/8083)
- Fixed downloading task annotations of teams you are not in, when accessing directly via URI. [#8155](https://github.com/scalableminds/webknossos/pull/8155)
- Removed unnecessary scrollbars in skeleton tab that occurred especially after resizing. [#8148](https://github.com/scalableminds/webknossos/pull/8148)
- Deleting a bounding box is now possible independently of a visible segmentation layer. [#8164](https://github.com/scalableminds/webknossos/pull/8164)
- S3-compliant object storages can now be accessed via HTTPS. [#8167](https://github.com/scalableminds/webknossos/pull/8167)
- Fixed that skeleton tree nodes were created with the wrong mag. [#8185](https://github.com/scalableminds/webknossos/pull/8185)
- Fixed the expected type of a tree node received from the server. Fixes nml export to include the `inMag` field correctly. [#8187](https://github.com/scalableminds/webknossos/pull/8187)
- Fixed a layout persistence bug leading to empty viewports, triggered when switching between orthogonal, flight, or oblique mode. [#8177](https://github.com/scalableminds/webknossos/pull/8177)

### Removed

Expand Down
10 changes: 10 additions & 0 deletions MIGRATIONS.released.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -6,6 +6,16 @@ See `MIGRATIONS.unreleased.md` for the changes which are not yet part of an offi
This project adheres to [Calendar Versioning](http://calver.org/) `0Y.0M.MICRO`.
User-facing changes are documented in the [changelog](CHANGELOG.released.md).

## [24.11.1](https://github.com/scalableminds/webknossos/releases/tag/24.11.1) - 2024-11-13
[Commits](https://github.com/scalableminds/webknossos/compare/24.10.0...24.11.1)

### Postgres Evolutions:

- [121-worker-name.sql](conf/evolutions/121-worker-name.sql)
- [122-resolution-to-mag.sql](conf/evolutions/122-resolution-to-mag.sql)
- [123-more-model-categories.sql](conf/evolutions/123-more-model-categories.sql)


## [24.10.0](https://github.com/scalableminds/webknossos/releases/tag/24.10.0) - 2024-09-24
[Commits](https://github.com/scalableminds/webknossos/compare/24.08.1...24.10.0)

Expand Down
6 changes: 1 addition & 5 deletions MIGRATIONS.unreleased.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -6,10 +6,6 @@ This project adheres to [Calendar Versioning](http://calver.org/) `0Y.0M.MICRO`.
User-facing changes are documented in the [changelog](CHANGELOG.released.md).

## Unreleased
[Commits](https://github.com/scalableminds/webknossos/compare/24.10.0...HEAD)
[Commits](https://github.com/scalableminds/webknossos/compare/24.11.1...HEAD)

### Postgres Evolutions:

- [121-worker-name.sql](conf/evolutions/121-worker-name.sql)
- [122-resolution-to-mag.sql](conf/evolutions/122-resolution-to-mag.sql)
- [123-more-model-categories.sql](conf/evolutions/123-more-model-categories.sql)